BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5083.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_892438.1| hypothetical protein CFF8240_1283 [Campylobacte...   105   2e-21
ref|NP_952619.1| hypothetical protein GSU1568 [Geobacter sulfurr...   103   1e-20
ref|YP_002538294.1| hypothetical protein Geob_2848 [Geobacter sp...   103   1e-20
ref|YP_314955.1| hypothetical protein Tbd_1197 [Thiobacillus den...   100   6e-20
ref|YP_001229679.1| hypothetical protein Gura_0900 [Geobacter ur...    98   4e-19

>ref|YP_892438.1| hypothetical protein CFF8240_1283 [Campylobacter fetus subsp. fetus
           82-40]
 ref|ZP_06008937.1| hypothetical protein CfetvA_06651 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gb|ABK82181.1| hypothetical protein CFF8240_1283 [Campylobacter fetus subsp. fetus
           82-40]
 gb|EGU24365.1| Hypothetical protein CFV354_1387 [Campylobacter fetus subsp.
           venerealis NCTC 10354]
          Length = 99

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 67/116 (57%), Gaps = 28/116 (24%)

Query: 11  MKCPVCTTVNLSMSDRQGVEIDYCPQCRGVWLDRGELDKLIERAQAVAPQVAARAPAPPQ 70
           MKCPVC   NL MS+RQGVEIDYCP CRGVWLDRGELDK+IER+ AV P+          
Sbjct: 1   MKCPVCADQNLMMSERQGVEIDYCPSCRGVWLDRGELDKIIERSGAVEPK---------- 50

Query: 71  YAPPMPPQQQQRGYDDRFGHGREYKDHSD-----------YRSRKKKGFLGEIFDF 115
                  Q  QR Y D+  H  EY  H D           YR +KK+ FL E+FDF
Sbjct: 51  -------QNSQREYFDKQNHKDEYNSHRDSRYSDKYYQDGYRKKKKESFLSELFDF 99


>ref|NP_952619.1| hypothetical protein GSU1568 [Geobacter sulfurreducens PCA]
 gb|AAR34942.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gb|ADI84403.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 97

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 67/107 (62%), Gaps = 13/107 (12%)

Query: 11  MKCPVCTTVNLSMSDRQGVEIDYCPQCRGVWLDRGELDKLIERAQAVAPQVAARAPAPPQ 70
           MKCPVCTTVNL MS+RQG+EIDYCP+CRGVWLDRGELDK+IER Q    + AA     P 
Sbjct: 1   MKCPVCTTVNLVMSERQGIEIDYCPECRGVWLDRGELDKIIERTQ--TKETAATHSPQPA 58

Query: 71  YAPPMPPQQQQR---GYDDRFGHGREYKDHSDYRSRKKKGFLGEIFD 114
             P   PQQ      GY    GHG     H  YR   KK FL E+FD
Sbjct: 59  AQPAYAPQQTGHAPAGYGYSHGHG-----HKPYR---KKSFLEELFD 97


>ref|YP_002538294.1| hypothetical protein Geob_2848 [Geobacter sp. FRC-32]
 gb|ACM21193.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 100

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 68/108 (62%), Gaps = 10/108 (9%)

Query: 11  MKCPVCTTVNLSMSDRQGVEIDYCPQCRGVWLDRGELDKLIERAQAVAPQVAARAPAPPQ 70
           MKCPVCT VNL +++RQGVEIDYCP CRGVWLDRGELDK+++R      QV    P P  
Sbjct: 1   MKCPVCTNVNLLLAERQGVEIDYCPTCRGVWLDRGELDKILDRVG----QVPMEQPVPES 56

Query: 71  Y--APPMPPQQQQRGYDDRFGHGREYKDHSDYRSRKKKGFLGEIFDFD 116
           Y   PP P      G++    HG E+K +   R  KKK  L EIFDFD
Sbjct: 57  YRQPPPQPVHHMNHGHN---YHG-EHKGYGHSRPHKKKSLLSEIFDFD 100


>ref|YP_314955.1| hypothetical protein Tbd_1197 [Thiobacillus denitrificans ATCC
           25259]
 gb|AAZ97150.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 92

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 14/106 (13%)

Query: 11  MKCPVCTTVNLSMSDRQGVEIDYCPQCRGVWLDRGELDKLIERAQAVAPQVAARAPAPPQ 70
           M CPVC TV+L MS+RQG+EIDYCPQCRGVWLDRGELDK+I+R+ + AP     APAP  
Sbjct: 1   MHCPVCKTVDLVMSERQGIEIDYCPQCRGVWLDRGELDKIIDRSASAAPSPREAAPAPHP 60

Query: 71  YAPPMPPQQQQRGYDDRFGHGREYKDHSDYRSRKKKGFLGEIFDFD 116
              P P +      D R+GH         +R ++++GFL ++FDFD
Sbjct: 61  GHAPRPYEG-----DPRYGH---------HRKKRREGFLSDLFDFD 92


>ref|YP_001229679.1| hypothetical protein Gura_0900 [Geobacter uraniireducens Rf4]
 gb|ABQ25106.1| Uncharacterized protein-like protein [Geobacter uraniireducens Rf4]
          Length = 104

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 71/118 (60%), Gaps = 26/118 (22%)

Query: 11  MKCPVCTTVNLSMSDRQGVEIDYCPQCRGVWLDRGELDKLIERAQAVAPQVAARAPAPPQ 70
           MKCPVCT V+L +++RQGVEIDYCPQCRGVWLDRGELDK+IER+ +VAP     A    Q
Sbjct: 1   MKCPVCTNVDLLIAERQGVEIDYCPQCRGVWLDRGELDKVIERS-SVAPIQHPLAGMASQ 59

Query: 71  YAPPMPPQQQ------------QRGYDDRFGHGREYKDHSDYRSRKKKGFLGEIFDFD 116
           ++ P  P  Q            Q GY   +GH            +KKK FL E+FDFD
Sbjct: 60  HSEPQYPSSQVKHGHDDHHGHKQHGYG--YGH-----------QKKKKSFLAEMFDFD 104