BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5079.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777303.1| glutamate synthase small subunit oxidoreduct... 968 0.0 ref|YP_001354990.1| glutamate synthase (NADPH) small chain [Jant... 890 0.0 ref|YP_001101311.1| glutamate synthase, small subunit, nucleotid... 888 0.0 ref|YP_004751163.1| glutamate synthase, small subunit, nucleotid... 860 0.0 ref|ZP_01739294.1| glutamate synthase, small subunit [Marinobact... 811 0.0 >ref|YP_003777303.1| glutamate synthase small subunit oxidoreductase [Herbaspirillum seropedicae SmR1] emb|CAM32562.1| Glutamate synthase (small subunit) oxidoreductase protein [Herbaspirillum seropedicae] gb|ADJ65395.1| glutamate synthase (small subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 968 bits (2503), Expect = 0.0, Method: Composition-based stats. Identities = 479/487 (98%), Positives = 485/487 (99%) Query: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV Sbjct: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE Sbjct: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 Query: 121 HFIIDKGWENGWVVPQPALVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWENGWVVPQPA +KTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG Sbjct: 121 HFIIDKGWENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVSFRTGVFVGKEFPESVNNWSKESVTPEELKKE 240 LLRYGIPDFKMEKSHIDLRVEQMKAEGV+FRTGVFVGK+FPE+VNNWSKE+VTPEELKKE Sbjct: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKE 240 Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKSQIMATGKNVVVIG 300 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLK+QIMATGKNVVVIG Sbjct: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCARDF 360 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGC RDF Sbjct: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDF 360 Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA Sbjct: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 Query: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM Sbjct: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 Query: 481 GSSLLPR 487 GSSLLPR Sbjct: 481 GSSLLPR 487 >ref|YP_001354990.1| glutamate synthase (NADPH) small chain [Janthinobacterium sp. Marseille] gb|ABR89126.1| glutamate synthase (NADPH) small chain [Janthinobacterium sp. Marseille] Length = 487 Score = 890 bits (2299), Expect = 0.0, Method: Composition-based stats. Identities = 416/487 (85%), Positives = 455/487 (93%) Query: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 MGK TGFME+QRL+EASE P RT HYKEF +HLSDAD+K+Q ARCMDCGIPFCNNGCPV Sbjct: 1 MGKITGFMEFQRLREASEEPQKRTAHYKEFTMHLSDADSKVQAARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 NNIIPDWNDLVY G YK+ALDTLH TNNFPEFTGRICPAPCE+ACTLGIN D VGIKSIE Sbjct: 61 NNIIPDWNDLVYSGAYKQALDTLHSTNNFPEFTGRICPAPCESACTLGINEDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVVPQPALVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGW+NGWVVPQ VKTGKK+AVVGSGPAG+AAAQQLAR GHD+TVFEKNDRVGG Sbjct: 121 HFIIDKGWDNGWVVPQVPSVKTGKKIAVVGSGPAGMAAAQQLARVGHDITVFEKNDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVSFRTGVFVGKEFPESVNNWSKESVTPEELKKE 240 LLRYGIPDFKMEK+HIDLRV+QM+AEGV+FRTGV VGK+FP ++ NW+KE+++PE++ K+ Sbjct: 181 LLRYGIPDFKMEKNHIDLRVKQMEAEGVTFRTGVLVGKDFPANIINWAKETISPEQINKD 240 Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKSQIMATGKNVVVIG 300 FDAV+IAGGAE PRDLPVPGRELKGVHFAM+FLPLQNKVNAGDK+K Q+MATGK+VVVIG Sbjct: 241 FDAVIIAGGAEQPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKVKDQLMATGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCARDF 360 GGDTGSDCVGTSNRHGAASV QFEL+PQPPE ENKPLVWPYWP KLRTSSSHEEGC RD+ Sbjct: 301 GGDTGSDCVGTSNRHGAASVAQFELLPQPPEEENKPLVWPYWPTKLRTSSSHEEGCERDW 360 Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 AV TKRLEGK GKVEKLIAARVE+KDG+M EVP+SEFE+KADLVLLAMGFVSPVQQVLDA Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGRMQEVPNSEFEMKADLVLLAMGFVSPVQQVLDA 420 Query: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 FGV+KDARGNAKATTDGEGCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQCAR VD FLM Sbjct: 421 FGVDKDARGNAKATTDGEGCYRTSVDKVFAAGDMRRGQSLVVWAIREGRQCAREVDAFLM 480 Query: 481 GSSLLPR 487 G S+LPR Sbjct: 481 GESVLPR 487 >ref|YP_001101311.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Herminiimonas arsenicoxydans] emb|CAL63190.1| Glutamate synthase [NADPH] small chain (NADPH-GOGAT) [Herminiimonas arsenicoxydans] Length = 487 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 409/487 (83%), Positives = 455/487 (93%) Query: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 MGK TGFME+QRL+EASE P RTKHYKEF +HLSDA+AK+Q RCMDCGIPFCNNGCPV Sbjct: 1 MGKITGFMEFQRLQEASEEPKKRTKHYKEFTVHLSDAEAKVQATRCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 NNIIPDWNDLVY G YK+ALDTLH TNNFPEFTGRICPAPCE+ACTLGIN+D VGIKSIE Sbjct: 61 NNIIPDWNDLVYSGAYKQALDTLHSTNNFPEFTGRICPAPCESACTLGINSDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVVPQPALVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWE+GWVVPQP +KTGKKVA+VGSGPAG+AAAQQLAR GHDVT+FEKNDR+GG Sbjct: 121 HFIIDKGWESGWVVPQPPSIKTGKKVAIVGSGPAGMAAAQQLARVGHDVTLFEKNDRIGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVSFRTGVFVGKEFPESVNNWSKESVTPEELKKE 240 LLRYGIPDFKMEKSHIDLRV+QM+AEGV+FRTGV VGK+FP ++ NW+KE+++PE+L K+ Sbjct: 181 LLRYGIPDFKMEKSHIDLRVKQMEAEGVTFRTGVLVGKDFPANIINWAKETISPEQLDKD 240 Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKSQIMATGKNVVVIG 300 FDAV++ GGAE PRDLPVPGREL+GVHFAMDFLPLQNKVNAGDK+K QI+ATGK+V+VIG Sbjct: 241 FDAVILTGGAEQPRDLPVPGRELRGVHFAMDFLPLQNKVNAGDKVKDQILATGKHVIVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCARDF 360 GGDTGSDCVGTSNRHGAAS+ QFEL+PQPPE+ENKP+VWPYWP KLRTSSSHEEGC RD+ Sbjct: 301 GGDTGSDCVGTSNRHGAASIVQFELLPQPPETENKPMVWPYWPTKLRTSSSHEEGCERDW 360 Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 AV TKRLEGK GKVEKLIAARVE+KDG+M EVPDSEFE+KADLVLLAMGFVSPV QVLDA Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGRMQEVPDSEFEMKADLVLLAMGFVSPVAQVLDA 420 Query: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 F ++KDARGNAKATTDG+GCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQCAR VD FLM Sbjct: 421 FSIDKDARGNAKATTDGDGCYRTSVDKVFAAGDMRRGQSLVVWAIREGRQCAREVDAFLM 480 Query: 481 GSSLLPR 487 G S+LPR Sbjct: 481 GESVLPR 487 >ref|YP_004751163.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Collimonas fungivorans Ter331] gb|AEK60340.1| glutamate synthase, small subunit, nucleotide-binding, 4Fe-4S protein [Collimonas fungivorans Ter331] Length = 487 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 420/487 (86%), Positives = 451/487 (92%) Query: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 MGK TGFMEYQR+ E EAP AR KHYKEF+L LS+ +AK QGARCMDCGIPFCNNGCPV Sbjct: 1 MGKVTGFMEYQRVGETYEAPVARKKHYKEFILSLSNDEAKTQGARCMDCGIPFCNNGCPV 60 Query: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 NNIIPDWNDLVYRG Y EAL+TLH TNNFPEFTGRICPAPCE+ACTLGIN+D VGIKSIE Sbjct: 61 NNIIPDWNDLVYRGAYHEALETLHSTNNFPEFTGRICPAPCESACTLGINSDPVGIKSIE 120 Query: 121 HFIIDKGWENGWVVPQPALVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 HFI+DKGWENGW+VPQP LVKTGKKVAVVGSGPAGLAAAQQLAR GH+VTVFEK+DRVGG Sbjct: 121 HFIVDKGWENGWIVPQPPLVKTGKKVAVVGSGPAGLAAAQQLARIGHEVTVFEKSDRVGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVSFRTGVFVGKEFPESVNNWSKESVTPEELKKE 240 LLRYGIPDFKMEKSHID RVEQM+AEGV+FRTGV VGK+FP +VNNW+K++V+PEELK E Sbjct: 181 LLRYGIPDFKMEKSHIDRRVEQMEAEGVTFRTGVLVGKDFPANVNNWAKKTVSPEELKAE 240 Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKSQIMATGKNVVVIG 300 FDAVVIAGGAE PRDLPVPGRELKGVHFAMDFLP QNKVNAGDK+K QI+A GK+VVVIG Sbjct: 241 FDAVVIAGGAEQPRDLPVPGRELKGVHFAMDFLPQQNKVNAGDKVKEQILAGGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCARDF 360 GGDTGSDCVGTSNR GA S+ QFELMPQPPE ENKPLVWPYWP KLRTSSSHEEGC RD+ Sbjct: 301 GGDTGSDCVGTSNRQGAVSIQQFELMPQPPELENKPLVWPYWPTKLRTSSSHEEGCDRDW 360 Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 AV TKRLEGK GKVEKLIAARVE+KDGKM EVPDSEFE+KADLV LAMGFVSPV QVL+A Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPDSEFEMKADLVFLAMGFVSPVAQVLEA 420 Query: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 FGV+KDARGNAKATTDG+ CYKTS DKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM Sbjct: 421 FGVDKDARGNAKATTDGDACYKTSADKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 Query: 481 GSSLLPR 487 G+S+LPR Sbjct: 481 GASVLPR 487 >ref|ZP_01739294.1| glutamate synthase, small subunit [Marinobacter sp. ELB17] gb|EAZ97791.1| glutamate synthase, small subunit [Marinobacter sp. ELB17] Length = 487 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 389/487 (79%), Positives = 432/487 (88%) Query: 1 MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60 MGK TGFME+QR KE+ A+R K+YKEF+L L D AK +GARCMDCG PFC GCPV Sbjct: 1 MGKITGFMEFQRQKESYLPAASRVKNYKEFILPLKDVQAKTEGARCMDCGTPFCMTGCPV 60 Query: 61 NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120 NNIIPDWN LVY GNY+EAL+TLH TNNFPEFTGRICPAPCE+AC L INNDAVGIKSIE Sbjct: 61 NNIIPDWNQLVYSGNYREALETLHSTNNFPEFTGRICPAPCESACVLAINNDAVGIKSIE 120 Query: 121 HFIIDKGWENGWVVPQPALVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180 HFIIDKGWENGWV PQPA KTGKK+AVVGSGPAGLAAAQQLAR GHDVTVFEKNDR+GG Sbjct: 121 HFIIDKGWENGWVTPQPAAFKTGKKIAVVGSGPAGLAAAQQLARVGHDVTVFEKNDRIGG 180 Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVSFRTGVFVGKEFPESVNNWSKESVTPEELKKE 240 LLRYGIP FKMEKSHID R+EQM+AEGV FRT V +G++FP ++ NW+KE+++P++L ++ Sbjct: 181 LLRYGIPGFKMEKSHIDRRIEQMQAEGVQFRTSVLIGEDFPSNIINWTKETISPKQLNQK 240 Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKSQIMATGKNVVVIG 300 FDA+++AGGAE PRDLPVPGRELKGVHFAM+FLP QN+V+AGDKL QIMA+GK+VVVIG Sbjct: 241 FDAIILAGGAELPRDLPVPGRELKGVHFAMEFLPQQNQVDAGDKLNDQIMASGKHVVVIG 300 Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCARDF 360 GGDTGSDCVGT NRH AAS+ QFELMPQPPE E+KPLVWPYWPIKLRTSSS EEGC RD+ Sbjct: 301 GGDTGSDCVGTCNRHSAASLAQFELMPQPPEQEDKPLVWPYWPIKLRTSSSQEEGCDRDW 360 Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420 AV TKR EGKGGKVEKLIA RVE+ DGKM EVP+SEFE+KADLVLLAMGFVSPV QVL+A Sbjct: 361 AVATKRFEGKGGKVEKLIAVRVEWIDGKMQEVPNSEFEMKADLVLLAMGFVSPVTQVLEA 420 Query: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480 F VEKD RGN KATTDG+GCY+TSVDKVFAAGDMRRGQSLVVWAIREGRQ ARA DEFLM Sbjct: 421 FAVEKDTRGNVKATTDGDGCYQTSVDKVFAAGDMRRGQSLVVWAIREGRQAARAADEFLM 480 Query: 481 GSSLLPR 487 G S LPR Sbjct: 481 GVSNLPR 487