BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5060.p         (168 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspiril...   211   4e-53
ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspiril...   202   1e-50
ref|YP_299458.1| hypothetical protein Reut_B5268 [Ralstonia eutr...    84   6e-15
ref|YP_003041146.1| hypothetical protein PAU_02310 [Photorhabdus...    77   1e-12
ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholder...    77   1e-12

>ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61554.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  211 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 96/116 (82%), Positives = 107/116 (92%)

Query: 52  GHPSTYKRIRAGFEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERHWLR 111
           G P+TYKRIRAGFEG GQVVLGRN AE TAVMANAPGPLELLPTAQYKTW+N+GERHWLR
Sbjct: 290 GAPATYKRIRAGFEGIGQVVLGRNGAECTAVMANAPGPLELLPTAQYKTWTNQGERHWLR 349

Query: 112 VSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIREDLIDPAGREDSKHD 167
           VSY+GIGQRG+ EEMESFLGEGDPY  IYLNN++DWWKLIREDL++PAGRED + +
Sbjct: 350 VSYLGIGQRGLPEEMESFLGEGDPYAKIYLNNTADWWKLIREDLVNPAGREDRERN 405


>ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 576

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/114 (80%), Positives = 102/114 (89%)

Query: 52  GHPSTYKRIRAGFEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERHWLR 111
           G P+TYKRIRAGFEG  QVVLGRNAA+ TAVMANAPGPLELLPTAQYKTW+N+GERHWLR
Sbjct: 286 GAPATYKRIRAGFEGMAQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLR 345

Query: 112 VSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIREDLIDPAGREDSK 165
            SY  IGQRGM EEM+SFLGEGDPY  IYLNN+ DWWKL+RE+LIDPAG+ED +
Sbjct: 346 TSYRAIGQRGMPEEMDSFLGEGDPYAEIYLNNTLDWWKLVREELIDPAGKEDKE 399


>ref|YP_299458.1| hypothetical protein Reut_B5268 [Ralstonia eutropha JMP134]
 gb|AAZ64614.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 592

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 16/167 (9%)

Query: 4   KKSPRLKVVTAMLVLTSLSGDLTPFQRLTIMNSAQSRQATPAVSTFCTGHPSTYKRIRAG 63
           +K P   +   ++V+T   G L       I    +    +  V    TG P+TYKR+RAG
Sbjct: 254 RKKPNRPMAEKVIVVTHSMGGLVSRALTEIHQCDKVLGVSHGVQP-ATGAPATYKRMRAG 312

Query: 64  FEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERHWLRVSYVGIGQRGMA 123
           FEGA ++ LGRNAA+  A+++ APG LELLPTA Y    N G + WL V       +G  
Sbjct: 313 FEGAEKLFLGRNAADVVAILSQAPGGLELLPTADY----NDG-KPWLFVR----DNKG-N 362

Query: 124 EEMESFLGEGDPYRNIYLNNSSDWWKLIRED---LIDPAGREDSKHD 167
           E M      GDPY  IYL  S  W+ L+ +    L+DP  ++   H+
Sbjct: 363 ELMPPLPAGGDPYEEIYL--SPAWYGLVPDHNLALMDPGDKKSQGHE 407


>ref|YP_003041146.1| hypothetical protein PAU_02310 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 emb|CAR66772.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 emb|CAQ84402.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 536

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 17/117 (14%)

Query: 51  TGHPSTYKRIRAGFEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERHWL 110
           TG P+TYKR++ G +G   +V+G N AE TAVMA +PGPL+LLP  +Y      G+R WL
Sbjct: 269 TGAPTTYKRMKTGEDGITGLVIGSNGAEMTAVMAQSPGPLQLLPGMKY------GKR-WL 321

Query: 111 RVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIREDLIDPAGREDSKHD 167
            ++   I  +         L E DPY+ IYL     WW L     ++P  ++  K +
Sbjct: 322 HIADGKIMHK---------LPESDPYKEIYLEKER-WWGLCETRFLNPDKQDKWKDN 368


>ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003]
 gb|ADN56032.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003]
          Length = 580

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 62/119 (52%), Gaps = 20/119 (16%)

Query: 52  GHPSTYKRIRAGFEG---------AGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWS 102
           G P  Y+R+RAG E          A   VLG +AA+ T VMAN+PGPLELLPT  Y    
Sbjct: 299 GAPVVYRRMRAGTETNGWFDLAGMAAAAVLGWSAADITCVMANSPGPLELLPTKHYPP-- 356

Query: 103 NRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSD-WWKLIREDLIDPAG 160
                 WLR       + G  +E+   L   +PY+ IY   + + WW +I E LIDPAG
Sbjct: 357 -----GWLRFEQ---NRGGKTKELMPALPVANPYQEIYSKTAQEVWWGMIDETLIDPAG 407