BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5058.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspiril... 658 0.0 ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspiril... 558 e-157 gb|EGW61024.1| hypothetical protein DsuiDRAFT_01976 [Dechlorosom... 238 2e-60 ref|YP_003749434.1| hypothetical protein RPSI07_mp0446 [Ralstoni... 218 1e-54 ref|NP_521769.1| hypothetical protein RS05220 [Ralstonia solanac... 215 1e-53 >ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1] gb|ADJ61551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 316/402 (78%), Positives = 350/402 (87%) Query: 19 ASQGKKLTSHWQELVMARQDAGKLGAQKPFTPLQEKQLQEAAELLYPVHAVGYNWLQSNK 78 ASQG LTS W+ELVM RQDA KLGAQKPF PL+E L++AAELLYPVHAVGYNWLQSNK Sbjct: 163 ASQGTLLTSRWKELVMDRQDAAKLGAQKPFVPLEEDHLRDAAELLYPVHAVGYNWLQSNK 222 Query: 79 VSAQRLAKEIERITAYYRSKGRSCEQVILVTHSMGGLVARACAQLPEMAERILGVVHGVM 138 VS QRLA EIERITAYYRSKG+SCEQVILVTHSMGGLVARACAQLP MAERILGVVHGVM Sbjct: 223 VSGQRLAGEIERITAYYRSKGKSCEQVILVTHSMGGLVARACAQLPGMAERILGVVHGVM 282 Query: 139 PALGAPATYKRIRAGFEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERH 198 PA+GAPATYKRIRAGFEG QVVLGRNAA+ TAVMANAPGPLELLPTAQYKTW+N+GERH Sbjct: 283 PAIGAPATYKRIRAGFEGMAQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNQGERH 342 Query: 199 WLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIREDLIDPAGREDSKHAK 258 WLR SY IGQRGM EEM+SFLGEGDPY IYLNN+ DWWKL+RE+LIDPAG+ED + A+ Sbjct: 343 WLRTSYRAIGQRGMPEEMDSFLGEGDPYAEIYLNNTLDWWKLVREELIDPAGKEDKERAR 402 Query: 259 KDGKVTVAKTRPAPDFDRYARTLKIARSLHKQIEDRYHPNTYAYYAADGQQLAWNEINWK 318 + KV + + DF+++A+ + A +LH+QIED+YHPNTYAYYAAD QQ AWNEINWK Sbjct: 403 SENKVLAREDAKSSDFEQFAKRMDKALTLHQQIEDQYHPNTYAYYAADPQQPAWNEINWK 462 Query: 319 CKPMVPGDPAKAQLVADDLNGMVELRFGGEDNRYCILQDGTGAGDGTVPAESGAAPKPFV 378 C PMVPGDPAKAQL DDLNGM+ELRFG R+ LQDGTG GDGTVPAESG APKP V Sbjct: 463 CGPMVPGDPAKAQLAEDDLNGMLELRFGEHHRRFFTLQDGTGPGDGTVPAESGGAPKPHV 522 Query: 379 VQLFKHEGKLRSHESYDHQFSYNAAISQAVTLYSIVRIVNSS 420 VQLFKHEGK +SH+SYDHQFSYNA I+QAVTLYSI+RIV+SS Sbjct: 523 VQLFKHEGKQKSHDSYDHQFSYNAKIAQAVTLYSIIRIVSSS 564 >ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1] gb|ADJ61554.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 273/363 (75%), Positives = 306/363 (84%), Gaps = 1/363 (0%) Query: 19 ASQGKKLTSHWQELVMARQDAGKLGAQKPFTPLQEKQLQEAAELLYPVHAVGYNWLQSNK 78 ASQGKKLTSHWQ+LVM+RQDA KLGAQKPF PLQE+QLQ+AAE LYPVHAVGYNWLQSNK Sbjct: 167 ASQGKKLTSHWQDLVMSRQDAAKLGAQKPFKPLQERQLQDAAEFLYPVHAVGYNWLQSNK 226 Query: 79 VSAQRLAKEIERITAYYRSKGRSCEQVILVTHSMGGLVARACAQLPEMAERILGVVHGVM 138 VSAQRLA EIERITAYYRSKGRSCE+VI+VTHSMGGLVARACAQLPEMAERILGVVHGVM Sbjct: 227 VSAQRLASEIERITAYYRSKGRSCEEVIVVTHSMGGLVARACAQLPEMAERILGVVHGVM 286 Query: 139 PALGAPATYKRIRAGFEGAGQVVLGRNAAESTAVMANAPGPLELLPTAQYKTWSNRGERH 198 PA+GAPATYKRIRAGFEG GQVVLGRN AE TAVMANAPGPLELLPTAQYKTW+N+GERH Sbjct: 287 PAIGAPATYKRIRAGFEGIGQVVLGRNGAECTAVMANAPGPLELLPTAQYKTWTNQGERH 346 Query: 199 WLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIREDLIDPAGREDSKHAK 258 WLRVSY+GIGQRG+ EEMESFLGEGDPY IYLNN++DWWKLIREDL++PAGRED + Sbjct: 347 WLRVSYLGIGQRGLPEEMESFLGEGDPYAKIYLNNTADWWKLIREDLVNPAGREDRERNT 406 Query: 259 KDGKVTVAKTRPAPDFDRYARTLKIARSLHKQIEDRYHPNTYAYYAADGQQLAWNEINWK 318 + + R PDFDRYA+ L+ A LHK I RYHP TYAYYAAD Q+ +WNE+ WK Sbjct: 407 RTERALHGNLR-RPDFDRYAQNLQKASELHKLIHQRYHPRTYAYYAADPQRPSWNEVQWK 465 Query: 319 CKPMVPGDPAKAQLVADDLNGMVELRFGGEDNRYCILQDGTGAGDGTVPAESGAAPKPFV 378 C +P D A+ D+LNG + L F + R +LQD +G GDGTVPAESGAAP P+V Sbjct: 466 CPVSLPDDIKTAKHRDDNLNGEIFLAFKKDIARRFVLQDPSGPGDGTVPAESGAAPTPYV 525 Query: 379 VQL 381 +Q+ Sbjct: 526 LQI 528 >gb|EGW61024.1| hypothetical protein DsuiDRAFT_01976 [Dechlorosoma suillum PS] Length = 542 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 167/432 (38%), Positives = 227/432 (52%), Gaps = 58/432 (13%) Query: 11 QLSAHSFTASQGKKLTSHWQELVMARQDAGK-LGAQKPFTPLQEKQLQEAAELLYPVHAV 69 L H Q K+ WQ L+ +D GK G K F L EK+L +A++ +PVHAV Sbjct: 148 HLEYHLNRMYQNGKVAEPWQALM---KDQGKGWGELKGFAALIEKELLDASDHWFPVHAV 204 Query: 70 GYNWLQSNKVSAQRLAKEIERITAYYRSKGRSCEQVILVTHSMGGLVARACA--QLPEMA 127 GYNWL+SN + + LA +IE+ A+YR +G C++ ILVTHSMGGLVARA ++ A Sbjct: 205 GYNWLESNDQAGKYLAGKIEQFIAHYRKQGYPCDKAILVTHSMGGLVARAACHPKIGNAA 264 Query: 128 ERILGVVHGVMPALGAPATYKRIRAGFE-GAGQ-----VVLGRNAAESTAVMANAPGPLE 181 ++LGVVHGV PA GA YKR+ AGFE G G+ VLG A+ TAV ANAPG L+ Sbjct: 265 SKVLGVVHGVQPATGAATAYKRVHAGFEAGLGKDTLVAKVLGWTGADVTAVFANAPGALQ 324 Query: 182 LLPTAQYKTWSNRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLI 241 LLP Y WL+VS G G + A+++ S L + DPY+ IY WW+LI Sbjct: 325 LLPNKLYPA-------GWLKVSRTGTGTK--AQDILS-LPKADPYQEIY-REKDKWWRLI 373 Query: 242 REDLIDPAGREDSKHAKKDGKVTVAKTRPAPDFDRYARTLKIARSLHKQIEDRYHPNTYA 301 + + IDP+ GK+ P ++RY L A H + D YHP+++ Sbjct: 374 QPEWIDPS-----------GKLVNESKDP---WERYLDNLDKAEQFHDTLGDYYHPSSWV 419 Query: 302 YYAADGQQLAWNEINW----KCKPMVPGDPAKAQLVADDLNGMVELRFGGEDNRYCIL-- 355 +Y AD AW + W + + + G+ A+L AD N + L + R+ L Sbjct: 420 HYGADEDHRAWGHVRWYPIGEIRYVRDGEIENARLKAD--NSLGRLVLESSEIRHNTLTP 477 Query: 356 ------QDGTGAGDGTVPAESGAAPKPFVVQLFKHEGKLRSHESYDHQFSYNAAISQAVT 409 + +GDGTVP ESG AP+ V + K G +DHQ SY A QA+T Sbjct: 478 WWNQEMESPHSSGDGTVPEESGRAPQGKVKFIAKMRG-------FDHQGSYQYAQVQALT 530 Query: 410 LYSIVRIVNSSG 421 LY I +I S Sbjct: 531 LYCIAKIAGGSA 542 >ref|YP_003749434.1| hypothetical protein RPSI07_mp0446 [Ralstonia solanacearum PSI07] emb|CBJ34791.1| conserved hypothethical protein [Ralstonia solanacearum PSI07] Length = 568 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 153/416 (36%), Positives = 213/416 (51%), Gaps = 52/416 (12%) Query: 18 TASQGKKLTSHWQELVMARQDAGKLGAQKPFTPLQEKQLQEAAE-LLYPVHAVGYNWLQS 76 +A G KL W+ +V A + + PL E++L++A + +PVHAVGYNWLQS Sbjct: 185 SAFWGGKLDPWWKCVVGVAPTAWQATEKPALAPLTEEELKQAIKGCWFPVHAVGYNWLQS 244 Query: 77 NKVSAQRLAKEIERITAYYRSKGRSCEQVILVTHSMGGLVARACA--QLPEMAERILGVV 134 N +A+ A+ IE+I A YR G CE+VI+VTHSMGGLV RA ++ EM +++LGVV Sbjct: 245 NWKAAEYAAQRIEKIMADYRQWGFQCEKVIVVTHSMGGLVGRALVHPKIGEMQDKVLGVV 304 Query: 135 HGVMPALGAPATYKRIRAGFEGAGQV----------VLGRNAAESTAVMANAPGPLELLP 184 HGV PA+GA A YKRIR GFE AG + + G AE TAV+AN+PG L+LLP Sbjct: 305 HGVQPAIGAAAAYKRIRCGFEDAGMLHGPVASITAKICGNMGAEVTAVLANSPGGLQLLP 364 Query: 185 TAQYKTWSNRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIRED 244 + Y WLRV++ G ++S GDPY IY W+ L+R + Sbjct: 365 SEAYGN-------GWLRVTHKG-------RTLKSLPQTGDPYEEIY-KLQDKWYGLLRPE 409 Query: 245 LIDPAGREDSKHAKKDGKVTVAKTRPAPDFDRYARTLKIARSLHKQIEDRYHPNTYAYYA 304 I+P G K+G + +R L A++ H+ IE YH +YA+Y Sbjct: 410 WINPGG-------DKEGGI-----------ERTHGYLSQAKAFHRAIEQTYHDQSYAHYG 451 Query: 305 ADGQQLAWNEINWKCKPMVP-GDPAKAQLVADDLNGMVELRFGGEDNRYCILQDGTGAGD 363 AD + AW + W+ G+ ++V D G +E+ L G GD Sbjct: 452 ADNGRPAWRNVTWEINDRATVGNIDALRIVTDTQQGALEVADATTQRIRVRLLPADGPGD 511 Query: 364 GTVPAESGAAPKPFVVQLFKHEGKLRSHESYDHQFSYNAAISQAVTLYSIVRIVNS 419 TVP S ++ K +G R Y+HQ SY + TLYS+VRIV + Sbjct: 512 QTVPLYSADHQ----LRSGKFKGLFR-QTGYEHQASYKDEHALCSTLYSLVRIVQT 562 >ref|NP_521769.1| hypothetical protein RS05220 [Ralstonia solanacearum GMI1000] emb|CAD17359.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 612 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 151/417 (36%), Positives = 212/417 (50%), Gaps = 54/417 (12%) Query: 18 TASQGKKLTSHWQELVMARQDAGKLGAQKPFTPLQEKQLQEAAE-LLYPVHAVGYNWLQS 76 +A G +L W+ +V + Q PL E L++A + +PVHAVGYNWL+S Sbjct: 229 SAFWGGQLDKWWKCVVGVAPTTWQANQQPALAPLTEDDLKQAVKGCWFPVHAVGYNWLKS 288 Query: 77 NKVSAQRLAKEIERITAYYRSKGRSCEQVILVTHSMGGLVARACA--QLPEMAERILGVV 134 N SA+ +A+ IE+I A YR G CE+VI+VTHSMGGLV RA ++ +M +++LGVV Sbjct: 289 NWESAEYVAQRIEKIMADYRQWGFQCEKVIVVTHSMGGLVGRALVHPRIGKMQDKVLGVV 348 Query: 135 HGVMPALGAPATYKRIRAGFEGAGQV----------VLGRNAAESTAVMANAPGPLELLP 184 HGV P++GA YKR+R GFE AG + + G AE TAV+AN+PG L+LLP Sbjct: 349 HGVQPSIGAATAYKRMRCGFEDAGMLHGPIASVTAKICGNMGAEVTAVLANSPGGLQLLP 408 Query: 185 TAQYKTWSNRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLNNSSDWWKLIRED 244 + Y WLRV++ G R + + GDPY IY W+ L+R + Sbjct: 409 SEAYGN-------GWLRVTHKGRTLRSLPQ-------TGDPYEEIY-KLQDRWYGLLRPE 453 Query: 245 LIDPAGREDSKHAKKDGKVTVAKTRPAPDFDRYARTLKIARSLHKQIEDRYHPNTYAYYA 304 I+P G K+G + +R L AR+ H+ IE YH +YA+Y Sbjct: 454 WINPGG-------DKEGGI-----------ERTHGYLNEARAFHRAIEQTYHDQSYAHYG 495 Query: 305 ADGQQLAWNEINWKC--KPMVPGDPAKAQLVADDLNGMVELRFGGEDNRYCILQDGTGAG 362 AD + W + W+ + MV G+ ++V D G +EL L GAG Sbjct: 496 ADSGRPTWRNVTWEINERSMV-GNVDALRIVTDTQQGALELTGTTAQRIRVHLLPADGAG 554 Query: 363 DGTVPAESGAAPKPFVVQLFKHEGKLRSHESYDHQFSYNAAISQAVTLYSIVRIVNS 419 D TVP S ++ K +G R Y+HQ SY + TLYS+VRI + Sbjct: 555 DQTVPLYSADHQ----LRSGKFKGLFR-QTGYEHQSSYKDEHALCSTLYSLVRIAQT 606