BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5057.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspiril...   249   8e-65
ref|YP_003773464.1| hypothetical protein Hsero_0026 [Herbaspiril...   242   1e-62
ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspiril...   239   9e-62
ref|ZP_03697946.1| PGAP1 family protein [Lutiella nitroferrum 20...   116   1e-24
ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholder...   101   3e-20

>ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 576

 Score =  249 bits (637), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 118/151 (78%), Positives = 132/151 (87%)

Query: 5   VKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGTRLKL 64
           + G  PTRLV T WD+ GN++AQSVLTGQ MKVRALCLT+PD V+PI+FVPGIMGTRLK+
Sbjct: 1   MSGFEPTRLVGTTWDDDGNDVAQSVLTGQNMKVRALCLTTPDVVVPILFVPGIMGTRLKV 60

Query: 65  KGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDISKTLL 124
            GRDKGPAWFPPE  WE+L LA KH+VRT ADRQRLLNPD+TEVDEDGPA PDD SKTLL
Sbjct: 61  TGRDKGPAWFPPESTWESLVLAFKHLVRTPADRQRLLNPDTTEVDEDGPASPDDTSKTLL 120

Query: 125 AFAPGKSDAERIKWRGWGQLHADSYLPILSL 155
           + APG +DAERIKWRGWGQLHADSYL ILS+
Sbjct: 121 SLAPGNTDAERIKWRGWGQLHADSYLGILSM 151


>ref|YP_003773464.1| hypothetical protein Hsero_0026 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61556.1| hypothetical protein Hsero_0026 [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  242 bits (618), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/142 (86%), Positives = 130/142 (91%)

Query: 1   MIAPVKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGT 60
           MI   KGP PTRLVPTAWDEQGN++AQSVLTGQRMKVRALCLTSPD V+P+VFVP IMGT
Sbjct: 1   MIMQSKGPGPTRLVPTAWDEQGNDVAQSVLTGQRMKVRALCLTSPDIVIPVVFVPSIMGT 60

Query: 61  RLKLKGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDIS 120
           RLKLKGR KGPAWFPPEG WETLALALKHV RTAADRQRLLNPD+TE DEDG A+PDDIS
Sbjct: 61  RLKLKGRGKGPAWFPPEGKWETLALALKHVGRTAADRQRLLNPDNTEADEDGSAYPDDIS 120

Query: 121 KTLLAFAPGKSDAERIKWRGWG 142
           KTLLAFAPGK+DAERIKW GWG
Sbjct: 121 KTLLAFAPGKTDAERIKWWGWG 142


>ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61554.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  239 bits (610), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 114/146 (78%), Positives = 127/146 (86%)

Query: 1   MIAPVKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGT 60
           M  P     P RLVPTAWDE GN++ QSVLTG+ MKVRALCLT+PD V+PIVFVPGIMGT
Sbjct: 1   MTRPAAAAGPMRLVPTAWDEVGNDVMQSVLTGKSMKVRALCLTTPDVVIPIVFVPGIMGT 60

Query: 61  RLKLKGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDIS 120
           RLK+KGR K  AWFPP+GGWE+L LAL+H+ RTAADRQRLLNP +TEVD+DGPAFPDDIS
Sbjct: 61  RLKVKGRIKDAAWFPPDGGWESLVLALRHIGRTAADRQRLLNPATTEVDDDGPAFPDDIS 120

Query: 121 KTLLAFAPGKSDAERIKWRGWGQLHA 146
           KTLL FAPGK+DAERIKWRGWGQLHA
Sbjct: 121 KTLLGFAPGKTDAERIKWRGWGQLHA 146


>ref|ZP_03697946.1| PGAP1 family protein [Lutiella nitroferrum 2002]
 gb|EEG09508.1| PGAP1 family protein [Lutiella nitroferrum 2002]
          Length = 574

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 10/146 (6%)

Query: 9   APTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGTRLKLKGRD 68
           + TR +P  +D+QGN   +SV +    K RALC+  P  V+P++FVPGIMGT LKL+G+D
Sbjct: 7   SATRRIPLQFDKQGNPYFESVKSPDSFKQRALCVKPPHNVIPVIFVPGIMGTNLKLQGKD 66

Query: 69  KGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPA-FPDDISKTLLAFA 127
              AW PP G  E +  A + V +T ++RQ L +P++TEV+ DGP   P D         
Sbjct: 67  GRDAWSPPNGTLEGIGAAGRGVKQTPSERQELFDPNNTEVNLDGPCKIPGDQYWV----- 121

Query: 128 PGKSDAERIKWRGWGQLHADSYLPIL 153
                AE  K RGWG LHADSY  IL
Sbjct: 122 ----TAEEAKRRGWGALHADSYHSIL 143


>ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003]
 gb|ADN56032.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003]
          Length = 580

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 11/146 (7%)

Query: 12  RLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGTRLKLKGRDK-- 69
           R VP  +DE G+    SV + +  K+RALC+  P  V+P++FVPGIMGT L   G+++  
Sbjct: 20  RRVPLQFDENGDPYFGSVTSPESFKMRALCVMPPRHVIPVIFVPGIMGTNLSSNGKNQKE 79

Query: 70  -GPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDISKTLLAFAP 128
              AW PP G W+ L    +   +T A+RQ+ ++PD+ +VD  GP     + +TL  F  
Sbjct: 80  GASAWTPPNGIWQGLGEVRRRSRQTPANRQQQMSPDAVKVDNTGPV---HVPRTL--FTL 134

Query: 129 GKSDAERIKWRGWGQLHADSYLPILS 154
            + +A+R   RGWG++H DSY  +L+
Sbjct: 135 TEKEAKR---RGWGEVHLDSYGKVLA 157