BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5056.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773460.1| hypothetical protein Hsero_0022 [Herbaspiril... 577 e-162 ref|YP_003773461.1| hypothetical protein Hsero_0023 [Herbaspiril... 555 e-156 ref|YP_003773466.1| hypothetical protein Hsero_0028 [Herbaspiril... 475 e-132 ref|YP_003773463.1| signal peptide protein [Herbaspirillum serop... 427 e-117 ref|YP_003905324.1| hypothetical protein BC1003_0024 [Burkholder... 142 1e-31 >ref|YP_003773460.1| hypothetical protein Hsero_0022 [Herbaspirillum seropedicae SmR1] gb|ADJ61552.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 271/357 (75%), Positives = 312/357 (87%) Query: 1 MIMKKKLRLIAIPTLVVWFFLSGDISLQKGLHIMNTAKASESAPALSTFCTGRFLLDLPA 60 M +KK LR IAI VW FLSGD S Q+G HIMNT++A ES A STFCTGRFL+D+PA Sbjct: 1 MRIKKSLRRIAISAFTVWLFLSGDFSPQQGSHIMNTSQAHESGSAPSTFCTGRFLIDMPA 60 Query: 61 GSVLSGGNYRYDFARLEQPKSMSLEEFETEMATTEKTLRSTKHKVEPSLLRLLVKPDPQS 120 GSVLSGGNYRYDF RL++PK+M+LEEFE EMAT EKTL STKHKVEPSLLRLLVKPDP S Sbjct: 61 GSVLSGGNYRYDFVRLDKPKAMTLEEFEVEMATKEKTLSSTKHKVEPSLLRLLVKPDPYS 120 Query: 121 WIFVYWEEDFITSVVQVDGYRWIDGTRYLFKAEAGHGKPATGTRSYQDNTVERVRKILSS 180 WIF+YWEE F+TS+ QVDGYRWI+GTRYLF++ AG KP TGT S QD +E +RK+LSS Sbjct: 121 WIFIYWEESFVTSIAQVDGYRWINGTRYLFRSHAGMSKPRTGTMSRQDYAIEGMRKMLSS 180 Query: 181 LHKRSTHEIPTEPGYCFEDGFIANPKWEMEEAGIDITIAGHPDAFVSVWFYPLARSAHSK 240 L KRSTHEIP+EPGYCFE GFIANP+WEMEEA IDI IAGHPDAFVS+WFYPL+R AHS Sbjct: 181 LKKRSTHEIPSEPGYCFEGGFIANPEWEMEEAAIDIDIAGHPDAFVSIWFYPLSRRAHSA 240 Query: 241 PLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRGHKFIWETEGD 300 PLLDR+GGVLQ LG+MATSVHVLR+G+RQVGPY+GQEFL +AP+S G+RGH FIWETEG+ Sbjct: 241 PLLDRVGGVLQALGRMATSVHVLRRGDRQVGPYKGQEFLVTAPNSGGLRGHSFIWETEGE 300 Query: 301 GTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVLDPQGSRP 357 GTLD PALKIELTTG+RDK GNPQQTRLT+E+A+KLWD+VL+SFRLRPV+ PQ ++P Sbjct: 301 GTLDAPALKIELTTGHRDKNGNPQQTRLTNEEAMKLWDEVLDSFRLRPVVAPQENQP 357 >ref|YP_003773461.1| hypothetical protein Hsero_0023 [Herbaspirillum seropedicae SmR1] gb|ADJ61553.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 260/355 (73%), Positives = 311/355 (87%), Gaps = 2/355 (0%) Query: 3 MKKKLRLIAIPTLVVWFFLSGDISLQKGLHIMNTAKASESAPALSTFCTGRFLLDLPAGS 62 M K LRLI + + +LSGDIS ++GLHI+NTA+A+ESAPA+STFCTGRFL+D+PAGS Sbjct: 1 MGKPLRLIVTAAMPILLWLSGDISSRQGLHIINTAQANESAPAVSTFCTGRFLIDMPAGS 60 Query: 63 VLSGGNYRYDFARLEQPKSMSLEEFETEMATTEKTLRSTKHKVEPSLLRLLVKPDPQSWI 122 VLSGGNYRYDFARL++P++MSLEEFE EMAT EK LRSTKH+ EPSLLRLL+K DP SWI Sbjct: 61 VLSGGNYRYDFARLDKPRAMSLEEFEAEMATKEKKLRSTKHETEPSLLRLLIKSDPHSWI 120 Query: 123 FVYWEEDFITSVVQVDGYRWIDGTRYLFKAEAGHGKPATGTRSYQDNTVERVRKILSSLH 182 F +WE DF +V VDGYRWIDGTR+LF+++AG KP +GT+SYQ++ ++R++ IL+ L Sbjct: 121 FAHWEYDFSEHIVLVDGYRWIDGTRFLFRSKAGMSKPPSGTKSYQEDAIDRMQTILAGLR 180 Query: 183 KRSTHEIPTEPGYCFEDGFIANPKWEMEEAGIDITIAGHPDAFVSVWFYPLARSAHSKPL 242 KRSTHEIPTEPGYCFE GFIANP+WEMEEAGID IAGHPDA+VSVWFYPL+ AHS+PL Sbjct: 181 KRSTHEIPTEPGYCFEGGFIANPEWEMEEAGID--IAGHPDAYVSVWFYPLSLRAHSQPL 238 Query: 243 LDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRGHKFIWETEGDGT 302 LDR+GGVLQ LG+MATSVH LR+G+RQVGPY+GQEFL +AP+S G+RGH FIWETEG+GT Sbjct: 239 LDRVGGVLQMLGRMATSVHALRRGDRQVGPYKGQEFLVTAPNSGGLRGHSFIWETEGEGT 298 Query: 303 LDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVLDPQGSRP 357 LD PALKIELTTG+RDK GNPQQTRLT+EQA+KLWD+VL+SFRLRPV PQ +RP Sbjct: 299 LDAPALKIELTTGHRDKNGNPQQTRLTNEQAMKLWDEVLDSFRLRPVAHPQETRP 353 >ref|YP_003773466.1| hypothetical protein Hsero_0028 [Herbaspirillum seropedicae SmR1] emb|CAM32695.1| Conserved Hypothetical [Herbaspirillum seropedicae] gb|ADJ61558.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 222/324 (68%), Positives = 260/324 (80%) Query: 34 MNTAKASESAPALSTFCTGRFLLDLPAGSVLSGGNYRYDFARLEQPKSMSLEEFETEMAT 93 MN A+AS + P++STFCTGRF+LD+PAGS LSGGNYRYDFARLE P++MSLEEFE E+ Sbjct: 1 MNFAQASRAVPSVSTFCTGRFMLDMPAGSTLSGGNYRYDFARLEAPQAMSLEEFEAELDA 60 Query: 94 TEKTLRSTKHKVEPSLLRLLVKPDPQSWIFVYWEEDFITSVVQVDGYRWIDGTRYLFKAE 153 KTLRS KH+ EPSLLR+L+KPD S I VYWEE FI + QV+GYRWIDGTRYLFK E Sbjct: 61 KVKTLRSIKHETEPSLLRMLIKPDQHSRILVYWEESFIEEIAQVEGYRWIDGTRYLFKTE 120 Query: 154 AGHGKPATGTRSYQDNTVERVRKILSSLHKRSTHEIPTEPGYCFEDGFIANPKWEMEEAG 213 AG P G SYQ + +ER+R L++L KR+TH+IP +PGYCFE GFIANP WE EEAG Sbjct: 121 AGMSPPPAGMPSYQADAIERMRLTLAALRKRATHDIPQDPGYCFEGGFIANPDWENEEAG 180 Query: 214 IDITIAGHPDAFVSVWFYPLARSAHSKPLLDRMGGVLQTLGQMATSVHVLRKGERQVGPY 273 IDI IAGHPDAFVS+WFYPLA S H +PLLDRM LQTLG +AT+V LRKG+RQVGPY Sbjct: 181 IDIDIAGHPDAFVSLWFYPLAMSKHDRPLLDRMSSGLQTLGHLATAVRTLRKGDRQVGPY 240 Query: 274 RGQEFLASAPSSRGMRGHKFIWETEGDGTLDTPALKIELTTGYRDKKGNPQQTRLTDEQA 333 +GQEFLA+ P+ G R H FIWETEG GTLDTPA+KIELTTG+ DK N Q TR++D QA Sbjct: 241 QGQEFLATTPNRGGGRSHSFIWETEGQGTLDTPAIKIELTTGHHDKNSNAQATRMSDAQA 300 Query: 334 IKLWDDVLNSFRLRPVLDPQGSRP 357 ++LWD+VLNSFRLRP + PQ S P Sbjct: 301 LQLWDEVLNSFRLRPAIPPQASSP 324 >ref|YP_003773463.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61555.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 205/357 (57%), Positives = 254/357 (71%), Gaps = 5/357 (1%) Query: 1 MIMKKKLRLIAIPTLVVWFFLSGDISLQKGLHIMNTAKASESAPALSTFCTGRFLLDLPA 60 M +K + I ++ +SGD+S+ G + + ++TFC GRFL+D+P Sbjct: 1 MNLKSSFFINGISIVLCTVAMSGDLSIYPG-----SGSMKKPPSPMTTFCVGRFLIDVPK 55 Query: 61 GSVLSGGNYRYDFARLEQPKSMSLEEFETEMATTEKTLRSTKHKVEPSLLRLLVKPDPQS 120 GS LSGGNY YDF +E+P+++ EEF +A E+ L+ KH EPSLLR++ PD S Sbjct: 56 GSTLSGGNYIYDFTHIERPQALEFEEFSARLAERERLLKEEKHNSEPSLLRVVESPDVHS 115 Query: 121 WIFVYWEEDFITSVVQVDGYRWIDGTRYLFKAEAGHGKPATGTRSYQDNTVERVRKILSS 180 I VYWE FIT+ +VDGY W+DG ++L K AG P G S QD V R+R+ L++ Sbjct: 116 RIHVYWESAFITAAAEVDGYLWMDGVQFLLKTWAGTSPPPPGITSRQDYAVARMRETLAN 175 Query: 181 LHKRSTHEIPTEPGYCFEDGFIANPKWEMEEAGIDITIAGHPDAFVSVWFYPLARSAHSK 240 L R +IPTEPGYCFE GFIANP+WE EEAGIDI IAGHPDAFVSVWFYPL S H K Sbjct: 176 LRTRQDDDIPTEPGYCFEGGFIANPEWENEEAGIDIDIAGHPDAFVSVWFYPLLMSKHDK 235 Query: 241 PLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRGHKFIWETEGD 300 PLL RM +Q+LG++A +V VLRKGERQVGPY GQEFL SAP+S GMRGH FIWETEG+ Sbjct: 236 PLLTRMSSAIQSLGRLAAAVRVLRKGERQVGPYTGQEFLVSAPNSGGMRGHSFIWETEGE 295 Query: 301 GTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVLDPQGSRP 357 GTLDTPALKIEL TG+ DK NPQ+T+L+D QAI+LWD+VLNSFRLRPV D + S+P Sbjct: 296 GTLDTPALKIELITGHHDKDSNPQKTKLSDAQAIQLWDEVLNSFRLRPVADTEESQP 352 >ref|YP_003905324.1| hypothetical protein BC1003_0024 [Burkholderia sp. CCGE1003] gb|ADN56033.1| hypothetical protein BC1003_0024 [Burkholderia sp. CCGE1003] Length = 414 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 159/320 (49%), Gaps = 34/320 (10%) Query: 46 LSTFCTGRFLLDLPAGSVLSGGNYRYDFARLE-QPKSMSLEEFETEMATTEKTLRSTK-- 102 + T+C GR+L+D+PA + ++G Y+Y + +E Q + S + A T +L+STK Sbjct: 4 VKTYCFGRYLVDIPADAQINGEAYQYKYGAIEAQHVADSRVAVKDYTARTVSSLKSTKAE 63 Query: 103 --HKVEPSLLRLLVKPDPQSWIFV-----YWEEDFITSVVQVDGYRWIDGTRYLFKAEAG 155 + + S V DPQ+ I V Y E+F VV+ D F+A Sbjct: 64 SGYAYDSS-----VDVDPQTTIVVSISKPYGRENFGIDVVRADKNVLFTMKERSFRATV- 117 Query: 156 HGKPATGTRSYQDNTVERVR-KILSSLHKRSTHEIPTEPGYCFEDGFIAN--PKWEMEEA 212 QD+ + ++ K+L +LH R EIP++ G+C +DGFIA+ + EEA Sbjct: 118 ----------LQDDVLPSLKAKVLPNLHARGVGEIPSQSGFCLKDGFIADDGKTAQYEEA 167 Query: 213 GIDITIAGHPDAFVSVWFYPLARSAHSKPLLDRMGG--VLQTLGQMATSVHVLRKGERQV 270 GI P VSV + + K LL+RM + + S+H +RKG R Sbjct: 168 GITFKFPQWPGVLVSVNSSTVTKLGEPK-LLERMAKAPIPDAYKSLMNSIHDIRKGTRVA 226 Query: 271 GPYRGQEFLASAPSSRGMRGHKFIWETEGDGTLD--TPALKIELTTGYRDKKGNPQQTRL 328 G+E L++ P+ G R H+F WE +G D P L +E +G G P + +L Sbjct: 227 AGREGEEILSTVPTDGGYRLHQFQWEAQGSKINDPLDPTLTVEFESGMTRIDGQPARPKL 286 Query: 329 TDEQAIKLWDDVLNSFRLRP 348 +DE+A++L+D V+NS RLRP Sbjct: 287 SDEEAVRLFDAVVNSIRLRP 306