BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5055.p (583 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspiril... 971 0.0 ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspiril... 753 0.0 gb|EGW61024.1| hypothetical protein DsuiDRAFT_01976 [Dechlorosom... 303 7e-80 ref|ZP_03697946.1| PGAP1 family protein [Lutiella nitroferrum 20... 270 4e-70 ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholder... 261 3e-67 >ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1] gb|ADJ61551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 971 bits (2511), Expect = 0.0, Method: Composition-based stats. Identities = 465/572 (81%), Positives = 512/572 (89%), Gaps = 2/572 (0%) Query: 12 EPTRLVGTAWDEDGNDVAQSVLTGENQKVRALCLTTPEVVVPILFVPGIMGTRLRVSKRD 71 EPTRLVGT WD+DGNDVAQSVLTG+N KVRALCLTTP+VVVPILFVPGIMGTRL+V+ RD Sbjct: 5 EPTRLVGTTWDDDGNDVAQSVLTGQNMKVRALCLTTPDVVVPILFVPGIMGTRLKVTGRD 64 Query: 72 QGPAWLPPENTWETITLGLTHLVRTAADRQRLLNPETTEVDDDGPAFPDDTSKTLLSLAP 131 +GPAW PPE+TWE++ L HLVRT ADRQRLLNP+TTEVD+DGPA PDDTSKTLLSLAP Sbjct: 65 KGPAWFPPESTWESLVLAFKHLVRTPADRQRLLNPDTTEVDEDGPASPDDTSKTLLSLAP 124 Query: 132 GQTDAERIKWRGWGQLHADSYLGILSLLETSMAMIFDPASQGARLTSHWKELVMDRQDAA 191 G TDAERIKWRGWGQLHADSYLGILS+LETSMAMIFDPASQG LTS WKELVMDRQDAA Sbjct: 125 GNTDAERIKWRGWGQLHADSYLGILSMLETSMAMIFDPASQGTLLTSRWKELVMDRQDAA 184 Query: 192 KLGAQKPFVAISDEDLRDAAEVLYPVHAVGYNWLQSNLVSAQRLAEEIERITAYYRSKGK 251 KLGAQKPFV + ++ LRDAAE+LYPVHAVGYNWLQSN VS QRLA EIERITAYYRSKGK Sbjct: 185 KLGAQKPFVPLEEDHLRDAAELLYPVHAVGYNWLQSNKVSGQRLAGEIERITAYYRSKGK 244 Query: 252 RCEGVILITHSMGGLVARACARLPGMTERILGVIHGVMPAIGAPATYKRIRAGFEGMAQV 311 CE VIL+THSMGGLVARACA+LPGM ERILGV+HGVMPAIGAPATYKRIRAGFEGMAQV Sbjct: 245 SCEQVILVTHSMGGLVARACAQLPGMAERILGVVHGVMPAIGAPATYKRIRAGFEGMAQV 304 Query: 312 VLGRDAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRASYRAIGQRGMPEEMDSFL 371 VLGR+AADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLR SYRAIGQRGMPEEMDSFL Sbjct: 305 VLGRNAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRTSYRAIGQRGMPEEMDSFL 364 Query: 372 GEGDPYAQIYLNNTSDWWKLVREDLIDPAGREDRERAESEGKLLVRTAEETSDFDRYRKK 431 GEGDPYA+IYLNNT DWWKLVRE+LIDPAG+ED+ERA SE K+L R ++SDF+++ K+ Sbjct: 365 GEGDPYAEIYLNNTLDWWKLVREELIDPAGKEDKERARSENKVLAREDAKSSDFEQFAKR 424 Query: 432 MEVAQLFHQHIKDSYHPNTYAYYAADPQQPAWNEINWKCNRMVSGDPLKARLDADDLNGT 491 M+ A HQ I+D YHPNTYAYYAADPQQPAWNEINWKC MV GDP KA+L DDLNG Sbjct: 425 MDKALTLHQQIEDQYHPNTYAYYAADPQQPAWNEINWKCGPMVPGDPAKAQLAEDDLNGM 484 Query: 492 VTLSFDQYHSHNQFFILQRGTGPGDGTVPAESGRSPQPHVVQLFKHEGKLKSHESYDHQF 551 + L F ++ H +FF LQ GTGPGDGTVPAESG +P+PHVVQLFKHEGK KSH+SYDHQF Sbjct: 485 LELRFGEH--HRRFFTLQDGTGPGDGTVPAESGGAPKPHVVQLFKHEGKQKSHDSYDHQF 542 Query: 552 SFNAKVAQATTFYSIIRIASASAYLKSPSGEK 583 S+NAK+AQA T YSIIRI S+S + K+PSG+K Sbjct: 543 SYNAKIAQAVTLYSIIRIVSSSTHFKTPSGDK 574 >ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1] gb|ADJ61554.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 377/528 (71%), Positives = 433/528 (82%), Gaps = 3/528 (0%) Query: 7 PEQAAEPTRLVGTAWDEDGNDVAQSVLTGENQKVRALCLTTPEVVVPILFVPGIMGTRLR 66 P AA P RLV TAWDE GNDV QSVLTG++ KVRALCLTTP+VV+PI+FVPGIMGTRL+ Sbjct: 4 PAAAAGPMRLVPTAWDEVGNDVMQSVLTGKSMKVRALCLTTPDVVIPIVFVPGIMGTRLK 63 Query: 67 VSKRDQGPAWLPPENTWETITLGLTHLVRTAADRQRLLNPETTEVDDDGPAFPDDTSKTL 126 V R + AW PP+ WE++ L L H+ RTAADRQRLLNP TTEVDDDGPAFPDD SKTL Sbjct: 64 VKGRIKDAAWFPPDGGWESLVLALRHIGRTAADRQRLLNPATTEVDDDGPAFPDDISKTL 123 Query: 127 LSLAPGQTDAERIKWRGWGQLHADSYLGILSLLETSMAMIFDPASQGARLTSHWKELVMD 186 L APG+TDAERIKWRGWGQLHA SYL ILSLLE+SMA+IFDPASQG +LTSHW++LVM Sbjct: 124 LGFAPGKTDAERIKWRGWGQLHASSYLSILSLLESSMALIFDPASQGKKLTSHWQDLVMS 183 Query: 187 RQDAAKLGAQKPFVAISDEDLRDAAEVLYPVHAVGYNWLQSNLVSAQRLAEEIERITAYY 246 RQDAAKLGAQKPF + + L+DAAE LYPVHAVGYNWLQSN VSAQRLA EIERITAYY Sbjct: 184 RQDAAKLGAQKPFKPLQERQLQDAAEFLYPVHAVGYNWLQSNKVSAQRLASEIERITAYY 243 Query: 247 RSKGKRCEGVILITHSMGGLVARACARLPGMTERILGVIHGVMPAIGAPATYKRIRAGFE 306 RSKG+ CE VI++THSMGGLVARACA+LP M ERILGV+HGVMPAIGAPATYKRIRAGFE Sbjct: 244 RSKGRSCEEVIVVTHSMGGLVARACAQLPEMAERILGVVHGVMPAIGAPATYKRIRAGFE 303 Query: 307 GMAQVVLGRDAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRASYRAIGQRGMPEE 366 G+ QVVLGR+ A+CTAVMANAPGPLELLPTAQYKTWTNQGERHWLR SY IGQRG+PEE Sbjct: 304 GIGQVVLGRNGAECTAVMANAPGPLELLPTAQYKTWTNQGERHWLRVSYLGIGQRGLPEE 363 Query: 367 MDSFLGEGDPYAQIYLNNTSDWWKLVREDLIDPAGREDRERAESEGKLLVRTAEETSDFD 426 M+SFLGEGDPYA+IYLNNT+DWWKL+REDL++PAGREDRER + L DFD Sbjct: 364 MESFLGEGDPYAKIYLNNTADWWKLIREDLVNPAGREDRERNTRTERALHGNLRR-PDFD 422 Query: 427 RYRKKMEVAQLFHQHIKDSYHPNTYAYYAADPQQPAWNEINWKCNRMVSGDPLKARLDAD 486 RY + ++ A H+ I YHP TYAYYAADPQ+P+WNE+ WKC + D A+ D Sbjct: 423 RYAQNLQKASELHKLIHQRYHPRTYAYYAADPQRPSWNEVQWKCPVSLPDDIKTAKHRDD 482 Query: 487 DLNGTVTLSFDQYHSHNQFFILQRGTGPGDGTVPAESGRSPQPHVVQL 534 +LNG + L+F + + F+LQ +GPGDGTVPAESG +P P+V+Q+ Sbjct: 483 NLNGEIFLAFKKDIARR--FVLQDPSGPGDGTVPAESGAAPTPYVLQI 528 >gb|EGW61024.1| hypothetical protein DsuiDRAFT_01976 [Dechlorosoma suillum PS] Length = 542 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 205/585 (35%), Positives = 298/585 (50%), Gaps = 64/585 (10%) Query: 10 AAEPTRLVGTAWDEDGNDVAQSVLTGENQKVRALCLTTPEVVVPILFVPGIMGTRLRVSK 69 +A TR+V T +D+ G +S+++ VRA C P+ V+P++FVPGIMG+ L+ + Sbjct: 2 SAVKTRIVPTLYDDKGRPYCKSIMSRTENTVRAKCTIPPDHVIPVIFVPGIMGSNLKSTA 61 Query: 70 RD--QGPAWLPPENTWETITLGLTHLVRTAADRQRLLNPETTEVDDDGPAFPDDTSKTLL 127 ++ +G AW P TW + A RQ LLNP +DD + S Sbjct: 62 KENIEGLAWAPDSFTWAR-----KFMFYKPAKRQILLNPSLASIDDSSEIPNAEVSWFSD 116 Query: 128 SLAPGQTD-AERIKWRGWGQLHADSYLGILSLLETSMAMIFDPASQGARLTSHWKELVMD 186 A Q + K RGWG + SY +L LE + ++ Q ++ W+ L+ D Sbjct: 117 MGADVQANWKAEFKRRGWGTVMLSSYGPLLYHLEYHLNRMY----QNGKVAEPWQALMKD 172 Query: 187 RQDAAKLGAQKPFVAISDEDLRDAAEVLYPVHAVGYNWLQSNLVSAQRLAEEIERITAYY 246 + G K F A+ +++L DA++ +PVHAVGYNWL+SN + + LA +IE+ A+Y Sbjct: 173 Q--GKGWGELKGFAALIEKELLDASDHWFPVHAVGYNWLESNDQAGKYLAGKIEQFIAHY 230 Query: 247 RSKGKRCEGVILITHSMGGLVARACA--RLPGMTERILGVIHGVMPAIGAPATYKRIRAG 304 R +G C+ IL+THSMGGLVARA ++ ++LGV+HGV PA GA YKR+ AG Sbjct: 231 RKQGYPCDKAILVTHSMGGLVARAACHPKIGNAASKVLGVVHGVQPATGAATAYKRVHAG 290 Query: 305 FEG------MAQVVLGRDAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRASYRAI 358 FE + VLG AD TAV ANAPG L+LLP Y WL+ S Sbjct: 291 FEAGLGKDTLVAKVLGWTGADVTAVFANAPGALQLLPNKLYPA-------GWLKVSRTGT 343 Query: 359 GQRGMPEEMDSFLGEGDPYAQIYLNNTSDWWKLVREDLIDPAGREDRERAESEGKLLVRT 418 G + +++ S L + DPY +IY WW+L++ + IDP+G+ LV Sbjct: 344 GTKA--QDILS-LPKADPYQEIY-REKDKWWRLIQPEWIDPSGK------------LVN- 386 Query: 419 AEETSDFDRYRKKMEVAQLFHQHIKDSYHPNTYAYYAADPQQPAWNEINW----KCNRMV 474 E ++RY ++ A+ FH + D YHP+++ +Y AD AW + W + + Sbjct: 387 -ESKDPWERYLDNLDKAEQFHDTLGDYYHPSSWVHYGADEDHRAWGHVRWYPIGEIRYVR 445 Query: 475 SGDPLKARLDADDLNGTVTLSFDQYHSHNQFFI-----LQRGTGPGDGTVPAESGRSPQP 529 G+ ARL AD+ G + L + HN ++ GDGTVP ESGR+PQ Sbjct: 446 DGEIENARLKADNSLGRLVLESSEIR-HNTLTPWWNQEMESPHSSGDGTVPEESGRAPQG 504 Query: 530 HVVQLFKHEGKLKSHESYDHQFSFNAKVAQATTFYSIIRIASASA 574 V + K G +DHQ S+ QA T Y I +IA SA Sbjct: 505 KVKFIAKMRG-------FDHQGSYQYAQVQALTLYCIAKIAGGSA 542 >ref|ZP_03697946.1| PGAP1 family protein [Lutiella nitroferrum 2002] gb|EEG09508.1| PGAP1 family protein [Lutiella nitroferrum 2002] Length = 574 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 206/611 (33%), Positives = 295/611 (48%), Gaps = 100/611 (16%) Query: 14 TRLVGTAWDEDGNDVAQSVLTGENQKVRALCLTTPEVVVPILFVPGIMGTRLRVSKRDQG 73 TR + +D+ GN +SV + ++ K RALC+ P V+P++FVPGIMGT L++ +D Sbjct: 9 TRRIPLQFDKQGNPYFESVKSPDSFKQRALCVKPPHNVIPVIFVPGIMGTNLKLQGKDGR 68 Query: 74 PAWLPPENTWETITLGLTHLVRTAADRQRLLNPETTEVDDDGPA-FPDDTSKTLLSLAPG 132 AW PP T E I + +T ++RQ L +P TEV+ DGP P D Sbjct: 69 DAWSPPNGTLEGIGAAGRGVKQTPSERQELFDPNNTEVNLDGPCKIPGDQY--------- 119 Query: 133 QTDAERIKWRGWGQLHADSYLGILSLLETSMAMIFDPASQGARLTSHWKELVMDRQDAAK 192 AE K RGWG LHADSY IL LE S+ D S+ R H L+ + Sbjct: 120 WVTAEEAKRRGWGALHADSYHSILQQLEVSLN---DQYSKPGRSQEHGNFLLPEIGLLGH 176 Query: 193 LGAQKPFV-------------------------AISDEDLRDAAEVLYPVHAVGYNWLQS 227 L P ++S+E++ + YPV A GYNWLQS Sbjct: 177 LNGVGPAASRTSGEPDYAAVAAAAVKAWNTTPPSLSEEEILRLDDYYYPVWAHGYNWLQS 236 Query: 228 NLVSAQRLAEEIERITAYYRSKGK-RCEG-VILITHSMGGLVARACARLPGMTERILGVI 285 N SA+ L E+I+++ +Y+ CEG VIL+THSMGGLV R A+L +++LGV+ Sbjct: 237 NEDSAKSLVEKIDQVIEHYQKTDYFDCEGKVILVTHSMGGLVGRRAAQLA--PDKVLGVV 294 Query: 286 HGVMPAIGAPATYKRIRAG--------FEGMA-QVVLGRDAADCTAVMANAPGPLELLPT 336 HGV P GAP Y+R RAG EG A ++G +AAD T +A +PGP+ELLPT Sbjct: 295 HGVQPVAGAPVVYRRFRAGTEVGGFFDIEGAAVAAIIGWNAADITPTLACSPGPMELLPT 354 Query: 337 AQYKTWTNQGERHWLRASYRAIGQRGMPEEMDSFLGEGDPYAQIYLNNTSD-WWKLVRED 395 Y WL+ + + EE+ L + DPY +IY T D WW ++ Sbjct: 355 PHYPP-------GWLKVTKKG------SEEVLINLPQADPYEEIYSKTTDDCWWGMLDPA 401 Query: 396 LIDPAGREDRERAESEGKLLVRTAEETSDFDRYRKKMEVAQLFHQHIKDSYHPNTYAYYA 455 LIDPA + T+E+++ +R +++A+ FH + HP TY YY Sbjct: 402 LIDPANK--------------LTSEDSTPLQVHRNALDLAKDFHNTLGLYAHPQTYGYYG 447 Query: 456 ADPQQ-PAWNEINWKCNRMVSGD---PLKARLDAD-DLNG--TVTLSFDQYHSHNQFFIL 508 D ++ + I+W+ + + D PL + D+ L G TV L + +F + Sbjct: 448 IDEKKYRTFGHIHWQTSGDIPNDDVLPLIYQQDSQRSLTGKSTVPLYGEASSPEVKFKLG 507 Query: 509 QRGTGPGDGTVPAESGR-----SPQPHVVQLFKHEGKLKSHESYDHQFSFNAKVAQATTF 563 GDGTVP +S + P P VV F+ G +DHQ S+ A T Sbjct: 508 NDRDQGGDGTVPLDSAKVLAQLQPPPKVV--FRIAG-------FDHQMSYKNPYAIQATV 558 Query: 564 YSIIRIASASA 574 Y I ++ +A Sbjct: 559 YGIAKLVQLAA 569 >ref|YP_003905323.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003] gb|ADN56032.1| hypothetical protein BC1003_0023 [Burkholderia sp. CCGE1003] Length = 580 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 205/610 (33%), Positives = 294/610 (48%), Gaps = 92/610 (15%) Query: 15 RLVGTAWDEDGNDVAQSVLTGENQKVRALCLTTPEVVVPILFVPGIMGTRLRVSKRDQ-- 72 R V +DE+G+ SV + E+ K+RALC+ P V+P++FVPGIMGT L + ++Q Sbjct: 20 RRVPLQFDENGDPYFGSVTSPESFKMRALCVMPPRHVIPVIFVPGIMGTNLSSNGKNQKE 79 Query: 73 -GPAWLPPENTWETITLGLTHLVRTAADRQRLLNPETTEVDDDGPAFPDDTSKTLLSLAP 131 AW PP W+ + +T A+RQ+ ++P+ +VD+ GP +TL +L Sbjct: 80 GASAWTPPNGIWQGLGEVRRRSRQTPANRQQQMSPDAVKVDNTGPV---HVPRTLFTLT- 135 Query: 132 GQTDAERIKWRGWGQLHADSYLGILSLLETSMAMIF-DPASQGARLTSHW---KELVMDR 187 + +A+R RGWG++H DSY +L+ LE + + D + L W K L Sbjct: 136 -EKEAKR---RGWGEVHLDSYGKVLAELEMGLNEQYSDAGTADHSLLPVWQIAKTLKYRN 191 Query: 188 QDAAKL--GAQKPFVAISDEDLRDAAEVLYPVHAVGYNWLQSNLVSAQRLAEEIERITAY 245 +D K +SD++ + YPV A GYNWL SN S+ +L I+ + Sbjct: 192 EDVRKHWNPVNPDLQPLSDDEFTRLDDYYYPVWACGYNWLGSNEASSDQLVARIQEALDW 251 Query: 246 YRSKGKR---CEGVILITHSMGGLVARACARLPGMTERILGVIHGVMPAIGAPATYKRIR 302 Y +KGK VI++THSMGGLVAR + +RILGV+HGV P GAP Y+R+R Sbjct: 252 Y-AKGKYWIPVGKVIIVTHSMGGLVARRAVQ--KAQDRILGVVHGVQPVGGAPVVYRRMR 308 Query: 303 AGFE--------GM-AQVVLGRDAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRA 353 AG E GM A VLG AAD T VMAN+PGPLELLPT Y WLR Sbjct: 309 AGTETNGWFDLAGMAAAAVLGWSAADITCVMANSPGPLELLPTKHYPP-------GWLRF 361 Query: 354 SYRAIGQRGMPEEMDSFLGEGDPYAQIYLNNTSD-WWKLVREDLIDPAG-REDRERAESE 411 + G +E+ L +PY +IY + WW ++ E LIDPAG D++R Sbjct: 362 EQ---NRGGKTKELMPALPVANPYQEIYSKTAQEVWWGMIDETLIDPAGLAADKKRLP-- 416 Query: 412 GKLLVRTAEETSDFDRYRKKMEVAQLFHQHIKDSYHPNTYAYYAADPQQPAWNEINWKCN 471 D Y + A+ FH ++ HP TYA+Y +DP+Q ++ + W + Sbjct: 417 -------------IDVYVDTLRTAETFHDAVQLDCHPVTYAHYGSDPKQVSFGRVVWTTS 463 Query: 472 RMVSGDPLKA----RLDADDLNGTVTLSFDQYHSHNQFFILQRGTGP--------GDGTV 519 +S D L + ++ L G TL+F + L+ P GDGTV Sbjct: 464 DDISADALSGLSGLKAESSTLFGKSTLAFGEQKVK---LTLEGHEAPTEHDKVNAGDGTV 520 Query: 520 PAESG-----RSPQPHVVQLFKHEGKLKSHESYDHQFSFNAKVAQATTFY---SIIRIAS 571 P SG +P P K S +DH S+ + Y I+++A Sbjct: 521 PLPSGALISDATPAP----------KAFSMTGFDHAASYKDENVLNNVLYCLAKIVQLAP 570 Query: 572 ASAYLKSPSG 581 A + L S G Sbjct: 571 AVSTLPSTKG 580