BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5049.p         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773455.1| transcription regulator protein [Herbaspiril...   112   2e-23
ref|YP_004847138.1| putative transcriptional regulator [Pseudogu...    77   6e-13
ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria ...    75   3e-12
ref|NP_900727.1| transcriptional regulator [Chromobacterium viol...    73   1e-11
ref|ZP_08249364.1| transcriptional regulator [Neisseria bacillif...    72   3e-11

>ref|YP_003773455.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61547.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/86 (86%), Positives = 80/86 (93%)

Query: 1  MKKSETPQSARVIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA 60
          MK +ETP SAR+IFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA
Sbjct: 1  MKTTETPPSARLIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA 60

Query: 61 LALALEMELPDLMRTSLLSLPSEDSR 86
          LA ALEMELPDL+R +LL+LP E+ R
Sbjct: 61 LAEALEMELPDLLRHTLLALPKEEHR 86


>ref|YP_004847138.1| putative transcriptional regulator [Pseudogulbenkiania sp. NH8B]
 dbj|BAK76724.1| putative transcriptional regulator [Pseudogulbenkiania sp. NH8B]
          Length = 81

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/78 (57%), Positives = 62/78 (79%)

Query: 1  MKKSETPQSARVIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA 60
          M+K   P +AR++F +N+R+VRRLKE+SQE LA +A +SRTY+SEVERGERN+S+DNM  
Sbjct: 1  MEKVSKPHAARMVFAKNLRQVRRLKEVSQEALALQAGLSRTYVSEVERGERNVSIDNMGL 60

Query: 61 LALALEMELPDLMRTSLL 78
          LA AL ++L DL+   +L
Sbjct: 61 LADALGVKLKDLLDPEML 78


>ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
 gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
          Length = 81

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/80 (57%), Positives = 61/80 (76%)

Query: 1  MKKSETPQSARVIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA 60
          M+K  TP   R+IF QN+R+VRRLKE+SQEELAF A +S+TY+SE+ERG R++S+D M  
Sbjct: 1  MEKPTTPNPYRLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQ 60

Query: 61 LALALEMELPDLMRTSLLSL 80
          +A AL M L +L+R  LL L
Sbjct: 61 IADALGMPLEELVRKDLLQL 80


>ref|NP_900727.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gb|AAQ58732.1| probable transcriptional regulator [Chromobacterium violaceum
          ATCC 12472]
          Length = 87

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query: 1  MKKSETPQSARVIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEA 60
          M+ +  P +AR +F +N+R  RRL ++SQE LA +A +SRTY+SE+ERGERN+S+DNM A
Sbjct: 1  MENTTKPLTARAVFARNLRIARRLHDVSQEALALQAGMSRTYVSEIERGERNVSIDNMGA 60

Query: 61 LALALEMELPDLM 73
          LA AL + L DL+
Sbjct: 61 LADALGVALRDLV 73


>ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
 gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
          Length = 82

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 56/75 (74%)

Query: 6  TPQSARVIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEALALAL 65
          +P + R+IF QN+R++RR+KE+SQEELAF A+ISR Y+ EVERG RN+++D M  ++ AL
Sbjct: 7  SPHAYRMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMGRISDAL 66

Query: 66 EMELPDLMRTSLLSL 80
          E+ L  L+   L  +
Sbjct: 67 EVPLDKLLLQDLTKI 81