BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5048.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773454.1| transmembrane sensory transduction histidine... 681 0.0 ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium... 430 e-118 ref|YP_004753178.1| signal transduction histidine kinase [Collim... 348 8e-94 emb|CAQ36418.1| transmembrane sensory transduction histidine kin... 337 3e-90 ref|YP_003749413.1| sensor histine kinase of the two component r... 336 6e-90 >ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61546.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 370/454 (81%), Positives = 411/454 (90%) Query: 1 MSLRLVVLFGLLALVLFTAVGSYLSHSLHMQLEARDDEELAGKCRSINHLVEHAASLEDI 60 +SLRLV LFGLLA+V+ A+G+YLSHSLH+QLE RDDEELAGKCRSINHLVEHAASLEDI Sbjct: 9 LSLRLVALFGLLAMVILAALGTYLSHSLHVQLERRDDEELAGKCRSINHLVEHAASLEDI 68 Query: 61 LARRHLVLDTLSGHDQLLVRIARADGSTLLESHDPTRTSPDVDLSTVKIRSWDHIEALRM 120 LARRHLVLDTL+GHDQLLVRIARADGSTLLESHDPTRT P +DLS V IR+WD I++ ++ Sbjct: 69 LARRHLVLDTLTGHDQLLVRIARADGSTLLESHDPTRTPPGIDLSQVDIRAWDSIQSWKL 128 Query: 121 GDLRARYIASMPVTRSGEKAIVLVVRTASDRMLLLADYRADVWWAAAIGTVLATLLSYFL 180 GDLRARY+AS PVTRSGE+A+VLVVRTASDRMLLLA+YR+DVWWAA +G +LA L+SYFL Sbjct: 129 GDLRARYVASKPVTRSGEQAVVLVVRTASDRMLLLAEYRSDVWWAAGVGALLAILMSYFL 188 Query: 181 VRSGLRPLRMMAAQTRAISANKLDTRLDLQAAPRELHEIVQSFNDMLDRLHRSFQQLSQF 240 VRSGLRPLR MAAQTRA+SAN+LDTRLDLQAAPRELHEIV+SFN+MLDRLHRSFQQLSQF Sbjct: 189 VRSGLRPLRTMAAQTRAVSANRLDTRLDLQAAPRELHEIVESFNEMLDRLHRSFQQLSQF 248 Query: 241 SADLAHDVRTPLNNLMVQTQVALGKPRSLDEYQALLSSNIEEYERLSRMMESMLFLARAD 300 SADLAHDVRTPLNNLMVQTQVALGKPR +DEYQALLSSNIEEYERLSRMMESMLFLARA+ Sbjct: 249 SADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQALLSSNIEEYERLSRMMESMLFLARAE 308 Query: 301 NAHVVLQIQPLDVAEELNRIADYFEGIAEEAQVRIAVAGSGTLYADATLLRRAVGNLVAN 360 NAHVVLQ Q LDVA+EL RIADYFEGIA+EAQVR+ V G+G L ADATLLRRAVGNLVAN Sbjct: 309 NAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQADATLLRRAVGNLVAN 368 Query: 361 AIRYTPPQGIISLEATVVAGATLIGVANPGPGIPPDQIERIFDRFYRADPSRSSASGSSG 420 AIRYTP G+I L+ I V+NPG GIP +Q+ER+FDRFYRADPSRSSA GSSG Sbjct: 369 AIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRSSAGGSSG 428 Query: 421 LGLAIVRTIMALHGGQASASSEPGRRTVFTLRFP 454 LGLAIVR+IM LHGGQAS +S PG+ TVF+LRFP Sbjct: 429 LGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFP 462 >ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] gb|ABR89313.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 238/456 (52%), Positives = 320/456 (70%), Gaps = 2/456 (0%) Query: 1 MSLRLVVLFGLLALVLFTAVGSYLSHSLHMQLEARDDEELAGKCRSINHLVEHAASLEDI 60 ++ R+ +LF L+++++F+ VG+YL SL QLE RDD+EL GK + HL E + S+ I Sbjct: 9 LTSRIGLLFFLVSVLIFSGVGTYLYRSLAGQLEFRDDQELMGKISLMRHLAEESDSIAAI 68 Query: 61 LARRHLVLDTLSGHDQLLVRIARADGSTLLESHDPTRTSPDVDLSTVKIRSWDHIEALRM 120 H LD + HD+L++ + DG+ +L ++ + P + + +++ L Sbjct: 69 RKDPHYFLDAAASHDRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITLLW 128 Query: 121 GD--LRARYIASMPVTRSGEKAIVLVVRTASDRMLLLADYRADVWWAAAIGTVLATLLSY 178 L AR IA+ RSGEK +++V RTASDRM LL YR ++ AA GT+LA LL Y Sbjct: 129 TSTGLTARAIAAQGKVRSGEKIVIVVARTASDRMELLKAYRVEIGMAALCGTLLAALLGY 188 Query: 179 FLVRSGLRPLRMMAAQTRAISANKLDTRLDLQAAPRELHEIVQSFNDMLDRLHRSFQQLS 238 LVR GLRP+R++A Q +I+A++LDTRLDL +AP+ELHE+VQ+FN MLDRL SFQ+LS Sbjct: 189 ILVRRGLRPVRLIAGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRLDGSFQRLS 248 Query: 239 QFSADLAHDVRTPLNNLMVQTQVALGKPRSLDEYQALLSSNIEEYERLSRMMESMLFLAR 298 QFSADLAHD+RTPLNNLMVQTQVAL + RS+++YQ LL SN+EEYERL+RM+ESMLFLAR Sbjct: 249 QFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFLAR 308 Query: 299 ADNAHVVLQIQPLDVAEELNRIADYFEGIAEEAQVRIAVAGSGTLYADATLLRRAVGNLV 358 ++ HV+L L + EEL RIADYFEG+A+EA VR+ V G +YADA LLRRA+GNLV Sbjct: 309 VEHTHVMLNKSALSLPEELQRIADYFEGLADEAGVRLTVEAGGRVYADAILLRRAIGNLV 368 Query: 359 ANAIRYTPPQGIISLEATVVAGATLIGVANPGPGIPPDQIERIFDRFYRADPSRSSASGS 418 ANAI YTP I L+ + A + V NPG GI I +F+RFYR D +RS+++ S Sbjct: 369 ANAIPYTPRGATIVLKGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNSATS 428 Query: 419 SGLGLAIVRTIMALHGGQASASSEPGRRTVFTLRFP 454 +GLGLAIV++IMALHGG+A+ +SE T F+L FP Sbjct: 429 TGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFP 464 >ref|YP_004753178.1| signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK62355.1| signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 393 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 202/396 (51%), Positives = 262/396 (66%), Gaps = 15/396 (3%) Query: 68 LDTLSGHDQLLVRIARADGSTLLESHDPTRTSPDVDLSTVKIRSWDHIEALRMGDLRARY 127 +D GHD LL+ + ADG+ LL++ + P + ++ E + R Sbjct: 1 MDATLGHDDLLLILRSADGAPLLDTRPEAGSLPALPMTAAGQ------EPDQESRQNLRT 54 Query: 128 IASMPV---------TRSGEKAIVLVVRTASDRMLLLADYRADVWWAAAIGTVLATLLSY 178 A +PV +GEK ++V SD + +LA YR + AA G +LA LL Y Sbjct: 55 SAGLPVRATALWANIDSTGEKVQIIVAHNTSDSIAMLASYRQQILGAALSGAILAALLGY 114 Query: 179 FLVRSGLRPLRMMAAQTRAISANKLDTRLDLQAAPRELHEIVQSFNDMLDRLHRSFQQLS 238 LVR GLRP R++A Q +I+A +LD LD+ +AP EL ++V +FN MLDRLH SFQ+LS Sbjct: 115 VLVRRGLRPARLIAQQAHSITAQRLDRGLDVASAPYELQQLVVAFNGMLDRLHDSFQRLS 174 Query: 239 QFSADLAHDVRTPLNNLMVQTQVALGKPRSLDEYQALLSSNIEEYERLSRMMESMLFLAR 298 QFSADLAHD+RTP+NNLMVQTQVAL +PR +EYQ LL SN+EEYERL+RM+++MLFLAR Sbjct: 175 QFSADLAHDLRTPINNLMVQTQVALAQPRLPEEYQGLLVSNVEEYERLARMLDNMLFLAR 234 Query: 299 ADNAHVVLQIQPLDVAEELNRIADYFEGIAEEAQVRIAVAGSGTLYADATLLRRAVGNLV 358 AD+AHV + LD EL RIADYFEG+AE++ V + +A SG + ADA LLRRA+ NLV Sbjct: 235 ADHAHVAVAFGELDCRLELQRIADYFEGVAEDSGVCLEIAASGNIRADAMLLRRAISNLV 294 Query: 359 ANAIRYTPPQGIISLEATVVAGATLIGVANPGPGIPPDQIERIFDRFYRADPSRSSASGS 418 ANAIRYT + L A AT+I V+NPGP I I R+FDRFYRADP+RS ++ S Sbjct: 295 ANAIRYTAAGQTVVLAAAQTEQATVISVSNPGPQIADSAIPRLFDRFYRADPARSDSASS 354 Query: 419 SGLGLAIVRTIMALHGGQASASSEPGRRTVFTLRFP 454 +GLGLAIV++IM LHGG+ S + TVFTL FP Sbjct: 355 AGLGLAIVQSIMKLHGGRVELSRSAEQMTVFTLYFP 390 >emb|CAQ36418.1| transmembrane sensory transduction histidine kinase for cobalt zinc cadmium resistance protein [Ralstonia solanacearum MolK2] Length = 465 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 202/457 (44%), Positives = 275/457 (60%), Gaps = 3/457 (0%) Query: 1 MSLRLVVLFGLLALVLFTAVGSYLSHSLHMQLEARDDEELAGKCRSINHLVEHAASLEDI 60 ++ RLV+ F L+A V+ T G+YL ++L+ QL A DD L GK + H A S++DI Sbjct: 8 LAARLVLAFVLVAGVMLTGAGTYLYYALNAQLRATDDAMLLGKIVQLRHCARDARSIDDI 67 Query: 61 LARRHLVLDTLSGHDQLLVRIARADGSTLLESHDPTRTSPDVDLSTVKIRSWD---HIEA 117 + H + +SGHD L++R+ DG TL+E++ + + D H Sbjct: 68 VRDAHRYTEVVSGHDGLILRVIAPDGRTLVEANPEGEPVAAPAAVPPDVMASDSALHTWW 127 Query: 118 LRMGDLRARYIASMPVTRSGEKAIVLVVRTASDRMLLLADYRADVWWAAAIGTVLATLLS 177 R G A + + VLV + R L+A YR ++ A G LLS Sbjct: 128 SRTGIASRAIAAQARLGNHHDTVTVLVAQDGDSRAALMASYRRHIFLAVIAGVAAVALLS 187 Query: 178 YFLVRSGLRPLRMMAAQTRAISANKLDTRLDLQAAPRELHEIVQSFNDMLDRLHRSFQQL 237 +LVRS L+ L + Q ++ ++LDTRL L+ APREL +++ + N ML RL F +L Sbjct: 188 LWLVRSTLKGLARIGRQAASVVPSQLDTRLTLEGAPRELSDLLAALNAMLTRLQDGFARL 247 Query: 238 SQFSADLAHDVRTPLNNLMVQTQVALGKPRSLDEYQALLSSNIEEYERLSRMMESMLFLA 297 SQFSADLAHD RTPL NL+ QT+V L PRS +EY+A+L S++EEY RLSRM+E MLFLA Sbjct: 248 SQFSADLAHDFRTPLANLIGQTEVTLAHPRSAEEYRAVLESSLEEYARLSRMIEDMLFLA 307 Query: 298 RADNAHVVLQIQPLDVAEELNRIADYFEGIAEEAQVRIAVAGSGTLYADATLLRRAVGNL 357 RAD+A V L + PLD E+ + DYFE +A + + I V+G+G + AD TLLRRA+ NL Sbjct: 308 RADHARVALSVAPLDARHEIQVLVDYFEAVAADRDIVIQVSGNGRVRADLTLLRRAINNL 367 Query: 358 VANAIRYTPPQGIISLEATVVAGATLIGVANPGPGIPPDQIERIFDRFYRADPSRSSASG 417 + NA+R+TP I + + T I V NPGPGIP + +FDRFYR DP+R+++ Sbjct: 368 LDNALRHTPGGARIDVAVQALPHGTAIAVRNPGPGIPAASLPLLFDRFYRGDPARANSER 427 Query: 418 SSGLGLAIVRTIMALHGGQASASSEPGRRTVFTLRFP 454 S+GLGLAIV TIM LHGG A ASS PG T F L FP Sbjct: 428 SAGLGLAIVHTIMDLHGGTAQASSPPGGPTEFQLLFP 464 >ref|YP_003749413.1| sensor histine kinase of the two component regulatory system, heavy metal resistance operon czccba activation [Ralstonia solanacearum PSI07] emb|CBJ34770.1| Sensor histine kinase of the two component regulatory system, heavy metal resistance operon czcCBA activation [Ralstonia solanacearum PSI07] Length = 465 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 206/457 (45%), Positives = 278/457 (60%), Gaps = 3/457 (0%) Query: 1 MSLRLVVLFGLLALVLFTAVGSYLSHSLHMQLEARDDEELAGKCRSINHLVEHAASLEDI 60 ++ RLV+ F L+A V+ T G+YL ++L+ QL A DD L GK + H + S++DI Sbjct: 8 LAARLVLAFVLVAGVMLTGAGTYLYYALNAQLRATDDAMLLGKIVQLRHCARDSQSIDDI 67 Query: 61 LARRHLVLDTLSGHDQLLVRIARADGSTLLESH---DPTRTSPDVDLSTVKIRSWDHIEA 117 + H + +SGHD L++R+ DG TL+E++ +P P V V S H Sbjct: 68 VRDAHRYTEVVSGHDGLILRVIAPDGRTLVEANPEGEPVAAPPAVPPDVVASESALHTWW 127 Query: 118 LRMGDLRARYIASMPVTRSGEKAIVLVVRTASDRMLLLADYRADVWWAAAIGTVLATLLS 177 R G A + + VLV + R LLA YR ++ A G LLS Sbjct: 128 SRTGIASRAIAAQARLGNRHDTVTVLVAQDGDSRAALLASYRRHIFLAVIAGVAAVALLS 187 Query: 178 YFLVRSGLRPLRMMAAQTRAISANKLDTRLDLQAAPRELHEIVQSFNDMLDRLHRSFQQL 237 +LVRS L+ L + Q ++ ++LDTRL L+ APREL +++ + N ML RL F +L Sbjct: 188 LWLVRSTLKGLARIGRQAASVVPSQLDTRLTLEGAPRELSDLLAALNAMLTRLQDGFARL 247 Query: 238 SQFSADLAHDVRTPLNNLMVQTQVALGKPRSLDEYQALLSSNIEEYERLSRMMESMLFLA 297 SQFSADLAHD RTPL NL+ QT+V L PR +EY+A+L S++EEY RLSRM+E MLFLA Sbjct: 248 SQFSADLAHDFRTPLANLVGQTEVTLAHPRPAEEYRAVLESSLEEYARLSRMIEDMLFLA 307 Query: 298 RADNAHVVLQIQPLDVAEELNRIADYFEGIAEEAQVRIAVAGSGTLYADATLLRRAVGNL 357 RAD+A V L + PLD E+ + DYFE +A + + I V+G G + AD TLLRRA+ NL Sbjct: 308 RADHARVALSVAPLDARHEIQVLVDYFEAVAADRDILIQVSGDGRVRADLTLLRRAINNL 367 Query: 358 VANAIRYTPPQGIISLEATVVAGATLIGVANPGPGIPPDQIERIFDRFYRADPSRSSASG 417 + NA+R+TP I + V+ T+I V NPGPGIP + +FDRFYR DP+R+++ Sbjct: 368 LDNALRHTPGGARIDVAVQVLPHGTVIAVRNPGPGIPAANLPLLFDRFYRGDPARANSER 427 Query: 418 SSGLGLAIVRTIMALHGGQASASSEPGRRTVFTLRFP 454 S+GLGLAIV TIM LHGG A ASS PG T F L FP Sbjct: 428 SAGLGLAIVHTIMDLHGGTAQASSPPGGPTEFRLSFP 464