BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5045.p (777 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspiril... 927 0.0 ref|YP_001792318.1| PAS/PAC sensor-containing diguanylate cyclas... 462 e-127 ref|YP_003524202.1| diguanylate cyclase/phosphodiesterase with P... 365 1e-98 ref|YP_003846945.1| diguanylate cyclase/phosphodiesterase with P... 363 4e-98 ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate... 357 7e-96 >ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1] gb|ADJ61544.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 492/725 (67%), Positives = 587/725 (80%), Gaps = 3/725 (0%) Query: 54 LAHSLVLPVWSLDQNDMMALLQGSMLDTQVVSVEVRDSEERVLVRKEEPLRRAGSLLTRT 113 L H LVLPVW+LDQ+D+MALL+G+MLD QVVS+EV D EE+ L R+ EP R AG L+ RT Sbjct: 2 LRHGLVLPVWNLDQSDIMALLKGAMLDRQVVSIEVIDPEEKALARRAEPQRSAGHLIHRT 61 Query: 114 LPLTMQQPDRMVTLGSVQVVVSDAQLQRKLAADKRFQTRVLLAQAVVALLIIGLLVYRRI 173 PL MQQ + V+LGS+ +VVSD QLQ+KLAADK F VLLAQA+V+LLIIGLLVYRRI Sbjct: 62 APLVMQQNQQDVSLGSLHIVVSDHQLQKKLAADKSFYALVLLAQAIVSLLIIGLLVYRRI 121 Query: 174 LAPISKLTQATERIQHGHFDTRIVLPQHDEIGVLACHMEAMQTSLKTLFDEQAAILGNIP 233 L PI KLTQAT RIQ G F+ I LPQ DEIG LA HMEAMQ SLKTLFDEQAAILGNIP Sbjct: 122 LGPIGKLTQATARIQRGSFEQGIDLPQQDEIGQLARHMEAMQASLKTLFDEQAAILGNIP 181 Query: 234 AGVLFVRDGRIAFANDAAQSMLALNGAGLTTLASAQIFEDAQQQSLYINHTLLRPHGATG 293 AGVLFVR G+I F N+AAQ++LA + L +A+ +F ++ QQ++Y+ + R GA G Sbjct: 182 AGVLFVRKGKIVFGNEAAQALLARDDRRLVGVAAEDLFVESVQQAVYVARAVARSSGAAG 241 Query: 294 EIVLLKRADGRSFPAELHTSLIDGTGQNDQIWVIIDVSERLEAESRIDRLAFYDPVTDLP 353 EIVLL+ A G SFPAELHTSLID +QIWV+IDVS RLEAE+RID+LAFYDPVT LP Sbjct: 242 EIVLLRNASGASFPAELHTSLIDPARPGEQIWVVIDVSARLEAENRIDQLAFYDPVTQLP 301 Query: 354 NKKLFLDRLRRGLGRQQAHGLPLVVFYMEMHRADLSHGLVKADDADRLFKECARRLGACV 413 NKKLF+DRLRRGL R++ G VF ME+HRADLS+G VKAD+ ++L ECARR +C+ Sbjct: 302 NKKLFMDRLRRGLDRRRTSGHAGAVFVMEIHRADLSYGSVKADEMEQLLIECARRFSSCI 361 Query: 414 AADQTLARLDGERFALGCDLPVSELAEGIRFCETLAHRLIAALAEPQG-STVSFPYSLNI 472 A+QT+AR++GE+FALG ++ +ELAE IR+CE LA R++ A +PQ S FP S+N+ Sbjct: 362 TAEQTVARMEGEKFALGTEIRSNELAECIRYCEALAQRILDAFTDPQSLSAARFPCSVNL 421 Query: 473 GINILRGDVQSAEEAVMQAKLAMVQSLAAGRNVFRFFDPAMQALASQRSALEVELRTAVA 532 GINI+R + A E VMQA+LAMVQS AAGRNVFRFFDPAMQALA+QRS LE ELR AVA Sbjct: 422 GINIVRDEQYGASELVMQAELAMVQSRAAGRNVFRFFDPAMQALANQRSQLEAELRQAVA 481 Query: 533 QHQFVVHYQPQVTFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEEIGHQVLEA 592 + QF+V+YQPQVT+EG VVGAEALVRW+HP++G+V P FI +AE++GLM+EIG QVL Sbjct: 482 RRQFIVYYQPQVTYEGDVVGAEALVRWQHPIRGIVSPTTFISLAEDMGLMDEIGRQVLHR 541 Query: 593 ICRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVKVELTESMM 652 IC DLE+WQREGLAR+LVVA+NVSAQEFKVD+FV RF E +R+H + S +VKVELTESMM Sbjct: 542 ICTDLENWQREGLARDLVVAINVSAQEFKVDNFVYRFREIMREHHVPSHSVKVELTESMM 601 Query: 653 IDKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAAT 712 +D I++VI KM L+S+EVSISLDDFGTGYSSLSYLGRFPIDQ+KIDQ+FVR MQ+DAA Sbjct: 602 VDHIEDVITKMQALRSNEVSISLDDFGTGYSSLSYLGRFPIDQIKIDQTFVREMQNDAAM 661 Query: 713 ASIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGEQFTALLE- 771 ASIIRSIIMLGQSL LSIIAEGVET +QRD LHAQGC LYQGYWY +P+PGEQF LL Sbjct: 662 ASIIRSIIMLGQSLNLSIIAEGVETEQQRDFLHAQGCLLYQGYWYSKPIPGEQFADLLNT 721 Query: 772 -GRQR 775 GR R Sbjct: 722 PGRFR 726 >ref|YP_001792318.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gb|ACB35553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 810 Score = 462 bits (1189), Expect = e-127, Method: Composition-based stats. Identities = 282/768 (36%), Positives = 431/768 (56%), Gaps = 7/768 (0%) Query: 16 MLLAMSLPVVVALTILNGTREQQISQEMTTLVDEKSQTLAHSLVLPVWSLDQNDMMALLQ 75 M + +P +V +T L R++QI QE+ ++ + L SLV+P W+ D M + + Sbjct: 41 MAAGLLVPALVGVTALTELRQKQIDQELVDKLENTAVLLGSSLVVPAWNYDIQGMTRITE 100 Query: 76 GSMLDTQVVSVEVRDSEERVLVRKEEPLRRAG-SLLTRT-LPLTMQQPDRMVTLGSVQVV 133 +MLD QVV + VRD LV E+P RR G S++ R + L+ Q D+ GSV++ Sbjct: 101 AAMLDPQVVRITVRDPASAPLVSVEQPERRRGRSVVQRQDMRLSGQVIDKTEVAGSVEIE 160 Query: 134 VSDAQLQRKLAADKRFQTRVLLAQAVVALLIIGLLVYRRILAPISKLTQATERIQHGHFD 193 D+ Q++ D++ +LL Q +++L ++ ++ +L P++ L+ + R+ G F+ Sbjct: 161 FDDSLAQQQFKNDRQVYAFILLGQLLLSLGLMLAALHLWVLKPLTSLSAFSSRVAGGDFE 220 Query: 194 TRIVLPQHDEIGVLACHMEAMQTSLKTLFDEQAAILGNIPAGVLFVRDGRIAFANDAAQS 253 + + DEIG LA M+ M+ LKT F EQ AIL NI GV+F R G I A+ A+ Sbjct: 221 HPLDWSRPDEIGRLALQMDKMRADLKTSFAEQRAILTNIELGVIFERGGLIQLASRQAER 280 Query: 254 MLALNGAGLTTLASAQIFEDAQQQSLYINHTLLRPHGATG---EIVLLKRADGRSFPAEL 310 ++ L I+ + + + + G E ++L R DG F A L Sbjct: 281 SFGHPPGFMSGLPILAIYPEDARAGIASARAMAAIATGDGRHEEELMLHRRDGSQFWAHL 340 Query: 311 HTSLID-GTGQNDQIWVIIDVSERLEAESRIDRLAFYDPVTDLPNKKLFLDRLRRGLGRQ 369 +D Q IWVI D+S R E ++RLAFYDP+T LPN++L DRL + L Sbjct: 341 RVRQLDPAQPQAGCIWVIEDISARKAVEDEVNRLAFYDPLTQLPNRRLLRDRLAQALAAS 400 Query: 370 QAHGLPLVVFYMEMHRADLSHGLVKADDADRLFKECARRLGACVAADQTLARLDGERFAL 429 G+ + ++++ + + D+L K +RL CV T+ARL G+ F + Sbjct: 401 ARSGMHGALIFIDLDNFKSLNDTLGHARGDQLLKLVGQRLTHCVRESDTVARLGGDEFVV 460 Query: 430 GCDLPVSELAEGIRFCETLAHRLIAALAEPQGSTVSFPYSL-NIGINILRGDVQSAEEAV 488 + L E E + +++ AL +P +S +IGI + D S ++ + Sbjct: 461 IVQDLGARLDECATQAEGVGEKILDALNQPYPLDGHVRHSTPSIGITLFADDRDSVDDLL 520 Query: 489 MQAKLAMVQSLAAGRNVFRFFDPAMQALASQRSALEVELRTAVAQHQFVVHYQPQVTFEG 548 +A +AM Q+ AGRN RFFD MQA+ QR+ALE ++R ++ F++HYQPQV G Sbjct: 521 KEADMAMYQAKTAGRNTLRFFDADMQAMLVQRAALEEDMRESMRLSHFLLHYQPQVVGSG 580 Query: 549 KVVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEEIGHQVLEAICRDLESWQREGLARE 608 ++ GAE L+RW HP++G+VPPA FIP+AE+ L+ +GH VLE C+ L W + + Sbjct: 581 RITGAEVLLRWPHPLRGLVPPAEFIPLAEDTNLITALGHWVLETACKTLADWSAQDDMKH 640 Query: 609 LVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVKVELTESMMIDKIDEVIEKMNDLKS 668 L V+VNVSA++F+ HFVA + + +K+ELTES++++ +++++ KM+ LKS Sbjct: 641 LSVSVNVSARQFRQPHFVAEVMSILERTGADPHLLKLELTESLLVEDVEDIVAKMSALKS 700 Query: 669 HEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAATASIIRSIIMLGQSLGL 728 V SLDDFGTGYSSL++L R P+DQLKIDQSFVR + D +I R ++ L SLGL Sbjct: 701 RGVGFSLDDFGTGYSSLAHLKRLPLDQLKIDQSFVRDILTDPNDLAIGRMVVALADSLGL 760 Query: 729 SIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGEQFTALLEGRQRA 776 ++IAEGVE QR+LL GC YQGY + RP+P E F A ++A Sbjct: 761 TVIAEGVELAAQRELLAQIGCDAYQGYLFSRPLPREPFEACCRAARQA 808 >ref|YP_003524202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gb|ADE11815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 694 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 195/476 (40%), Positives = 289/476 (60%), Gaps = 3/476 (0%) Query: 299 KRADGRSFPAELH-TSLIDGTGQ-NDQIWVIIDVSERLEAESRIDRLAFYDPVTDLPNKK 356 +R +G +P L T++ D G + + D+SER AE I LAFYDP+T LPN++ Sbjct: 214 RRKNGEIYPKWLSITAIKDADGNVTNYVGTHTDISERKTAEEEIRNLAFYDPLTQLPNRR 273 Query: 357 LFLDRLRRGLGRQQAHGLPLVVFYMEMHRADLSHGLVKADDADRLFKECARRLGACVAAD 416 L DRL+ + + + + ++++ + + D L ++ A+RL +CV D Sbjct: 274 LLQDRLQHAMSSTERNRKGGALLFLDLDNFKSINDTLGHTAGDNLLQQVAQRLTSCVRED 333 Query: 417 QTLARLDGERFALGCDLPVSELAEGIRFCETLAHRLIAALAEPQGSTVSFPYSL-NIGIN 475 T++R+ G+ F + + +E+ E ET+ ++IA L +P Y+ +IGI Sbjct: 334 DTVSRIGGDEFVVMLEYLSNEVLEAAAQAETIGEKIIAELNQPYYLGGQELYNTPSIGIT 393 Query: 476 ILRGDVQSAEEAVMQAKLAMVQSLAAGRNVFRFFDPAMQALASQRSALEVELRTAVAQHQ 535 + + E+ QA +AM Q+ +GRN RFFDP MQ + R ALE ELR A+ Q Sbjct: 394 LFDDNRNGYEDLFKQADIAMYQAKKSGRNTLRFFDPKMQGSINTRVALERELRKALDSQQ 453 Query: 536 FVVHYQPQVTFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEEIGHQVLEAICR 595 F +HYQ QV G G EAL+RW HP +G+VPP FI +AEE GL+ IG VLE C+ Sbjct: 454 FRLHYQIQVDSSGLPFGVEALIRWLHPERGLVPPFEFISLAEETGLICPIGEWVLETACK 513 Query: 596 DLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVKVELTESMMIDK 655 L+ W+R L ++L+++VNVSA++F FV + E I +H ++ +K+ELTESM++DK Sbjct: 514 QLKLWERHELTQDLIMSVNVSAKQFYQSDFVVKVLEAIHRHDVNPSLLKLELTESMLLDK 573 Query: 656 IDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAATASI 715 I++ I MN LK+ V SLDDFGTGYSSL YL R P++QLKID+SFVR + D++ +I Sbjct: 574 IEDTISTMNALKAVGVRFSLDDFGTGYSSLQYLKRLPLNQLKIDRSFVRDIAVDSSDEAI 633 Query: 716 IRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGEQFTALLE 771 + +II + SL L +IAEGVET EQ+ +L +GC YQGY +G+P+P EQ +L+ Sbjct: 634 VSTIIAMAHSLNLDVIAEGVETDEQKQILLNKGCIHYQGYLFGKPVPIEQLEVMLK 689 >ref|YP_003846945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gb|ADL55181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1013 Score = 363 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 199/477 (41%), Positives = 293/477 (61%), Gaps = 7/477 (1%) Query: 299 KRADGRSFPAELHTSLIDGTGQNDQIWVII--DVSERLEAESRIDRLAFYDPVTDLPNKK 356 +R DG +P L S + +V D++ AES I +LAFYDP+T LPN++ Sbjct: 537 RRKDGEIYPEYLLISAVKDIKNEVANYVATFRDITANKAAESEIKKLAFYDPLTLLPNRR 596 Query: 357 LFLDRLRRGLGRQQAHGLPLVVFYMEMHRADLSHGLVKADDADRLFKECARRLGACVAAD 416 L DRL L + + ++++ + + D D L K+ A RL +C+ D Sbjct: 597 LLTDRLNHALASSARNRNIGALLFIDLDNFKTLNDTLGHDMGDALLKQVALRLKSCIRED 656 Query: 417 QTLARLDGERFALGCDLPVSELA-EGIRFCETLAHRLIAALAE--PQGSTVSFPYSLNIG 473 TLARL G+ F + + +SELA + E + +++AAL + P S + + +IG Sbjct: 657 DTLARLGGDEFVVILE-NLSELAMDAATKAELIGEKILAALNQVYPLASQ-EYHGAASIG 714 Query: 474 INILRGDVQSAEEAVMQAKLAMVQSLAAGRNVFRFFDPAMQALASQRSALEVELRTAVAQ 533 + + G S +E + QA +AM QS +GRN RFFD Q + ++R+ LE+ELR AV + Sbjct: 715 VTLFAGHALSIDELMKQADIAMYQSKKSGRNTLRFFDLDTQKIINERAELEIELRKAVDK 774 Query: 534 HQFVVHYQPQVTFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEELGLMEEIGHQVLEAI 593 Q +HYQ Q+ G + AEAL+RW HP++G++ PA FIP+AE+ GL+ IG VL+ Sbjct: 775 KQLHLHYQIQLNSVGTPLSAEALIRWVHPVRGLISPAHFIPLAEDTGLILPIGQWVLDTA 834 Query: 594 CRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKAVKVELTESMMI 653 C L SWQ E ++L +AVNVSA++F +FVA ET+++H I+ K +K+ELTESM++ Sbjct: 835 CAQLHSWQDERFTQDLTLAVNVSAKQFHQKNFVALVKETVQRHAINPKLLKLELTESMLV 894 Query: 654 DKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSFVRRMQDDAATA 713 + I+++I MN L+ + SLDDFGTGYSSL YL R P++QLKIDQSFVR + ++ Sbjct: 895 ENIEDIIVTMNALREMGIQFSLDDFGTGYSSLQYLKRLPLNQLKIDQSFVRELSSSSSDR 954 Query: 714 SIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMPGEQFTALL 770 +I+R+I+ + +SL L++IAEGVET EQ LL GC YQGY +G+PMP EQ A+L Sbjct: 955 AIVRTIVAMAESLNLNVIAEGVETEEQHTLLQDIGCNYYQGYLFGKPMPIEQLDAIL 1011 >ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gb|ABD70959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Rhodoferax ferrireducens T118] Length = 1036 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 209/494 (42%), Positives = 293/494 (59%), Gaps = 6/494 (1%) Query: 287 RPHGATGEIVLLKRADGRSFPAELHTSLI---DGTGQNDQIWVIIDVSERLEAESRIDRL 343 R G GE V +R G +P L S++ DGT + I D+SER AE RI L Sbjct: 541 RKGGWQGE-VWNRRKSGEVYPQLLSISVVKDADGTVTH-YIAAHHDISERKNAEERIKEL 598 Query: 344 AFYDPVTDLPNKKLFLDRLRRGLGRQQAHGLPLVVFYMEMHRADLSHGLVKADDADRLFK 403 AF+D +T L N+ L LDR + + G + ++++ + + + D D L K Sbjct: 599 AFFDQLTGLANRTLLLDRAVQTMAASSRDGSFGALMFIDLDNFKMLNDTLGHDMGDILLK 658 Query: 404 ECARRLGACVAADQTLARLDGERFALGCDLPVSELAEGIRFCETLAHRLIAALAEP-QGS 462 + A+RL CV T+ARL G+ F + + E ET+A +++ AL + Q Sbjct: 659 QVAQRLNTCVRDGDTVARLGGDEFVVKLAGLGTVAGEAAVSAETVADKILTALNQTYQLG 718 Query: 463 TVSFPYSLNIGINILRGDVQSAEEAVMQAKLAMVQSLAAGRNVFRFFDPAMQALASQRSA 522 +V++ + +IG+ + +G + EE + QA LAM ++ AA RN RFFDPAM+++ R+A Sbjct: 719 SVAYHSTPSIGVTLFKGQSVAIEELMKQADLAMYRAKAASRNTVRFFDPAMESVMMVRAA 778 Query: 523 LEVELRTAVAQHQFVVHYQPQVTFEGKVVGAEALVRWKHPMKGMVPPALFIPVAEELGLM 582 LE +LR A+ +HQFV+HYQ QV + + GAE LVRW+HP +GMV P FIP AEE GL+ Sbjct: 779 LERDLRQALEEHQFVLHYQAQVAGDYHLTGAEVLVRWQHPQRGMVWPDDFIPAAEETGLI 838 Query: 583 EEIGHQVLEAICRDLESWQREGLARELVVAVNVSAQEFKVDHFVARFHETIRQHRISSKA 642 +GH VL+ C L W +L VAVNVSAQ+F+ FVA+ + + + Sbjct: 839 LPLGHWVLQTACTQLTIWAARPETADLTVAVNVSAQQFRQPDFVAQVLAVLAATGANPQR 898 Query: 643 VKVELTESMMIDKIDEVIEKMNDLKSHEVSISLDDFGTGYSSLSYLGRFPIDQLKIDQSF 702 +K+ELTES+++ + ++IEKM LK+ V SLDDFGTG+SSLSYL R P+DQLKID+SF Sbjct: 899 LKLELTESLLVSNVQDLIEKMAALKAKGVGFSLDDFGTGFSSLSYLKRLPLDQLKIDKSF 958 Query: 703 VRRMQDDAATASIIRSIIMLGQSLGLSIIAEGVETMEQRDLLHAQGCTLYQGYWYGRPMP 762 VR + D A+I ++II L QSL L +IAEGVET QRD L GC YQGY++ RP+P Sbjct: 959 VRDVLTDPNDAAIAKTIIALAQSLALGVIAEGVETSAQRDFLAQAGCQAYQGYFFSRPVP 1018 Query: 763 GEQFTALLEGRQRA 776 E F L RA Sbjct: 1019 LEDFEQLCAAGLRA 1032