BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5037.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777463.1| hypothetical protein Hsero_4085 [Herbaspiril... 672 0.0 gb|AEE56511.1| hypothetical protein UMNK88_1914 [Escherichia col... 472 e-131 ref|ZP_03825022.1| hypothetical protein PcarbP_00305 [Pectobacte... 467 e-129 ref|YP_001670390.1| hypothetical protein PputGB1_4166 [Pseudomon... 422 e-116 ref|ZP_07785857.1| hypothetical protein EC182770_2193 [Escherich... 265 1e-68 >ref|YP_003777463.1| hypothetical protein Hsero_4085 [Herbaspirillum seropedicae SmR1] gb|ADJ65555.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 1383 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 329/421 (78%), Positives = 362/421 (85%) Query: 1 MSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPAGTVIGVQAKYFFKLDAPELAQI 60 +SVQLFRKC +P NSSFISLRGDGGDGGVEAYFRTP TVIGVQAKYFFKLDAPEL QI Sbjct: 23 LSVQLFRKCAKIPTNSSFISLRGDGGDGGVEAYFRTPTDTVIGVQAKYFFKLDAPELTQI 82 Query: 61 ADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQAERFEEWKDMVESAAAASGQSL 120 ADSLS ALSNHP L EYHIY+PFDLTGR AGKRGKSQAERFEEWK VESAAA SG+ L Sbjct: 83 ADSLSAALSNHPTLAEYHIYIPFDLTGRVAAGKRGKSQAERFEEWKTKVESAAAESGRPL 142 Query: 121 RVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQIEQLLQQAIEFAGPRYTADLDIE 180 ++L AASIQ QLQEID YGG+RRYWFDETTI++HQI LLQQAIEFAGPRYTADLDIE Sbjct: 143 LIILATAASIQSQLQEIDIYGGVRRYWFDETTITSHQIGHLLQQAIEFAGPRYTADLDIE 202 Query: 181 THAHPVLDIFSGIGDYRTWADESLSPYISKLRSTHGYGTESFKILPASDKTKVTALLDEL 240 THAH VLDIFSGIGDY TW +ESL P+IS+L+STH YG ES +ILP D+T+ + Sbjct: 203 THAHTVLDIFSGIGDYHTWVNESLEPHISRLQSTHDYGEESLQILPEEDRTQDRGAFGRI 262 Query: 241 LAVLNGLEYKSSDDLSSRALDLLEQLAPQLNEVRSLQELAFYKEHGPNADTPGFRQFHSE 300 SD SSR L+LLEQL+P L+E RSLQE AF+K+HGPN+DTPGFRQFH+E Sbjct: 263 ARAPECSGEGKSDVASSRTLELLEQLSPLLSEHRSLQETAFFKQHGPNSDTPGFRQFHAE 322 Query: 301 INVSFPAQGMDSAREYERICNEIQHVLTSGEYRASTVSSLLLTGSASIGKTHAIISAASR 360 NVSFPAQGMDSAR YE++CNE++ VLTSGE+RASTVSSLLLTGSASIGKTHAIISAA+R Sbjct: 323 YNVSFPAQGMDSARTYEKVCNELKRVLTSGEFRASTVSSLLLTGSASIGKTHAIISAANR 382 Query: 361 RVKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNVGQDELFETLQSSADHTGLPFVIFIY 420 R+KRGGMSLVVFGENFDGKEPWEVLRSKLGYGSN+GQDELFETLQSSA+HTGLPFVIFI Sbjct: 383 RLKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNMGQDELFETLQSSAEHTGLPFVIFID 442 Query: 421 A 421 A Sbjct: 443 A 443 >gb|AEE56511.1| hypothetical protein UMNK88_1914 [Escherichia coli UMNK88] Length = 1375 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 243/433 (56%), Positives = 302/433 (69%), Gaps = 9/433 (2%) Query: 1 MSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPAGTVIGVQAKYFFKLDAPELAQI 60 ++VQLFRK VP NS+FISLRGDGGDGGVEAYFR+P G V GVQAKYFF+L + EL QI Sbjct: 22 LAVQLFRKTCRVPTNSTFISLRGDGGDGGVEAYFRSPDGAVFGVQAKYFFQLASAELTQI 81 Query: 61 ADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQAERFEEWKDMVESAAAASGQSL 120 SL ALSNHP L EY IY+PFDLTGR AGKRGKSQAERFEEWK VES A+A G+SL Sbjct: 82 DSSLKAALSNHPTLTEYWIYIPFDLTGRVAAGKRGKSQAERFEEWKSKVESEASAKGKSL 141 Query: 121 RVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQIEQLLQQAIEFAGPRYTADLDIE 180 +VL AA I QL EID YGGMRRYWFD+T ++T QI+Q L+ AI FAGPRYT+ LD+ Sbjct: 142 SIVLCTAAVICNQLLEIDPYGGMRRYWFDDTLLTTAQIQQCLEDAIAFAGPRYTSMLDVV 201 Query: 181 THAHPVLDIFSGIGDYRTWADESLSPYISKLRSTHGYGTESFKILPASDKTKVTALLDEL 240 T+AH LD F G GD+ W + SL+P + + S +GYG +S IL + T TAL++E+ Sbjct: 202 TNAHVGLDFFGGTGDFCEWYETSLTPIVREFHSLNGYGRKSLDILGETRATSATALIEEI 261 Query: 241 LAVL-----NGLEYKSSDDLSSRALDLLEQLAPQLNEVRSLQELAFYKEHGPNADTPGFR 295 +A N + S DLS LL A + R QE FY++HG ++DT FR Sbjct: 262 IAYCESMRDNNVTATSVTDLSVALSSLLTLFA----DARHAQEDKFYEKHGKHSDTESFR 317 Query: 296 QFHSEINVSFPAQGMDSAREYERICNEIQHVLTSGEYRASTVSSLLLTGSASIGKTHAII 355 QFH+E +FPA MD+AR++E ++Q++LTS A+T SLLL G A IGKTHAI+ Sbjct: 318 QFHAEYMCAFPAGDMDAARKWEEQAQQLQNLLTSQVIGAATAHSLLLVGPAGIGKTHAIV 377 Query: 356 SAASRRVKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNVGQDELFETLQSSADHTGLPF 415 SAA RR++ GG SLVVFG++F EPWEVLRSK+G G+ + + LFE +Q+ A+HTGLPF Sbjct: 378 SAALRRLEHGGFSLVVFGDDFGKAEPWEVLRSKIGLGAAIDRSTLFECIQACAEHTGLPF 437 Query: 416 VIFIYASYSFSRE 428 VI+I A RE Sbjct: 438 VIYIDALNESPRE 450 >ref|ZP_03825022.1| hypothetical protein PcarbP_00305 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1375 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 238/431 (55%), Positives = 301/431 (69%), Gaps = 5/431 (1%) Query: 1 MSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPAGTVIGVQAKYFFKLDAPELAQI 60 ++VQLFRK VP NS+FISLRGDGGDGGVEAYFR+P G V GVQAKYFF+L + EL QI Sbjct: 22 LAVQLFRKTCRVPTNSTFISLRGDGGDGGVEAYFRSPDGAVFGVQAKYFFQLASAELTQI 81 Query: 61 ADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQAERFEEWKDMVESAAAASGQSL 120 SL ALSNHP L EY IY+PFDLTGR AGKRGKSQAERFEEWK VES A+A G+SL Sbjct: 82 DSSLKAALSNHPTLTEYWIYIPFDLTGRVAAGKRGKSQAERFEEWKSKVESEASAKGKSL 141 Query: 121 RVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQIEQLLQQAIEFAGPRYTADLDIE 180 +VL AA I QL EID YGGMRRYWFD+T ++ QI+Q L AI FAGPRYT+ LD+ Sbjct: 142 SIVLCTAAVICNQLLEIDPYGGMRRYWFDDTLLTAAQIQQCLDDAIAFAGPRYTSMLDVV 201 Query: 181 THAHPVLDIFSGIGDYRTWADESLSPYISKLRSTHGYGTESFKILPASDKTKVTALLDEL 240 T+AH LD F G GD+ W + SL+P + + S +GYG +S IL + T TAL++E+ Sbjct: 202 TNAHVGLDFFGGSGDFCEWYETSLTPIVREFHSLNGYGRKSLDILGETRATSATALIEEI 261 Query: 241 LAVLNGLEYKSSDDLSSRALDL---LEQLAPQLNEVRSLQELAFYKEHGPNADTPGFRQF 297 +A + + ++ ++ DL L L + R QE FY++HG ++DT FRQF Sbjct: 262 IAYCESM--RDNNVTATSVTDLCVALSSLLTLFADARHAQEDKFYEKHGKHSDTESFRQF 319 Query: 298 HSEINVSFPAQGMDSAREYERICNEIQHVLTSGEYRASTVSSLLLTGSASIGKTHAIISA 357 H+E +FPA MD+AR++E ++Q++LTS A+T SLLL G A IGKTHAI+SA Sbjct: 320 HAEYMCAFPAGDMDAARKWEEQAQQLQNLLTSQVIGAATAHSLLLVGPAGIGKTHAIVSA 379 Query: 358 ASRRVKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNVGQDELFETLQSSADHTGLPFVI 417 A RR++ GG SLVVFG++F EPWEVLRSK+G G+ + + LFE +Q+ A+HTGLPFVI Sbjct: 380 ALRRLEHGGFSLVVFGDDFGKAEPWEVLRSKIGLGAAIDRSTLFECIQACAEHTGLPFVI 439 Query: 418 FIYASYSFSRE 428 +I A RE Sbjct: 440 YIDALNESPRE 450 >ref|YP_001670390.1| hypothetical protein PputGB1_4166 [Pseudomonas putida GB-1] gb|ABZ00055.1| hypothetical protein PputGB1_4166 [Pseudomonas putida GB-1] Length = 1386 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 211/422 (50%), Positives = 287/422 (68%), Gaps = 1/422 (0%) Query: 1 MSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPAGTVIGVQAKYFFKLDAPELAQI 60 ++VQLF+ +VP SSF SLRGDGGDGGVEA+FRTP+G V+GVQAKYFF L + EL+QI Sbjct: 27 LAVQLFQHFCDVPKQSSFYSLRGDGGDGGVEAFFRTPSGEVLGVQAKYFFSLGSKELSQI 86 Query: 61 ADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQAERFEEWKDMVESAAAASGQSL 120 A SL A NHP L+EY IY+PFDLTGR G RG+ + ERFE WK+ E+ A A G+SL Sbjct: 87 AKSLEAARLNHPTLLEYWIYIPFDLTGRVAGGGRGQGEVERFEVWKNEAEARAEAEGKSL 146 Query: 121 RVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQIEQLLQQAIEFAGPRYTADLDIE 180 R+ L +++ ++ QLQ +D +GG+RRYWFD++ ++ + I Q L+QA EFAGPRY+ DLD+ Sbjct: 147 RITLCSSSVMREQLQRLDSHGGIRRYWFDDSILTPNHIHQCLEQAREFAGPRYSGDLDVV 206 Query: 181 THAHPVLDIFSGIGDYRTWADESLSPYISKLRSTHGYGTESFKILPASDKTKVTALLDEL 240 T AH VLD F D+ W ++L+P I +LRS + F ++ S K + LL L Sbjct: 207 TDAHNVLDFFGQTVDFADWRHKTLTPLIGELRSLSRRSDKVFDLIALSMKAEAQQLLQRL 266 Query: 241 LAVLNGLEYKSSDDLSSR-ALDLLEQLAPQLNEVRSLQELAFYKEHGPNADTPGFRQFHS 299 L+ ++ + + + +L +L L P L V+ QE AF+ +HG + DTP FRQF + Sbjct: 267 QDSLSQARANAAPEQALQDSLKILATLHPILKAVKESQEAAFFAKHGADKDTPSFRQFSA 326 Query: 300 EINVSFPAQGMDSAREYERICNEIQHVLTSGEYRASTVSSLLLTGSASIGKTHAIISAAS 359 E +FPA+ MD+ARE ++C+ + H+L S + ++ SLLL G A +GKTHAI+SAA Sbjct: 327 EYMCAFPAEAMDAARELCKLCSSLDHLLASPSFNVTSSRSLLLVGPAGVGKTHAIVSAAL 386 Query: 360 RRVKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNVGQDELFETLQSSADHTGLPFVIFI 419 RR GMSLV+FG++F G EPWEV+RSKLG S V +D LF+ + + A HTGLPFVIFI Sbjct: 387 RRFTAAGMSLVMFGDDFGGGEPWEVIRSKLGLSSQVSRDALFQCMSACAQHTGLPFVIFI 446 Query: 420 YA 421 A Sbjct: 447 DA 448 >ref|ZP_07785857.1| hypothetical protein EC182770_2193 [Escherichia coli 1827-70] gb|EFQ01479.1| hypothetical protein EC182770_2193 [Escherichia coli 1827-70] Length = 224 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/192 (67%), Positives = 147/192 (76%) Query: 1 MSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPAGTVIGVQAKYFFKLDAPELAQI 60 ++VQLFRK VP NS+FISLRGDGGDGGVEAYFR+P G V GVQAKYFF+L + EL QI Sbjct: 22 LAVQLFRKTCRVPTNSTFISLRGDGGDGGVEAYFRSPDGAVFGVQAKYFFQLASAELTQI 81 Query: 61 ADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQAERFEEWKDMVESAAAASGQSL 120 SL ALSNHP L EY IY+PFDLTGR AGKRGKSQAERFEEWK VES A+A G+SL Sbjct: 82 DSSLKAALSNHPTLTEYWIYIPFDLTGRVAAGKRGKSQAERFEEWKSKVESEASAKGKSL 141 Query: 121 RVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQIEQLLQQAIEFAGPRYTADLDIE 180 +VL AA I QL EID YGGMRRYWFD+T ++ QI+Q L AI FAGPRYT+ LD+ Sbjct: 142 SIVLCTAAVICNQLLEIDPYGGMRRYWFDDTLLTAAQIQQCLDDAIAFAGPRYTSMLDVV 201 Query: 181 THAHPVLDIFSG 192 T+AH LD G Sbjct: 202 TNAHVGLDFLVG 213