BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5031.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777261.1| amino acid transport periplasmic protein [He... 476 e-132 ref|YP_522302.1| extracellular solute-binding protein [Rhodofera... 280 2e-73 ref|YP_002541291.1| amino acid ABC transporter [Agrobacterium ra... 248 7e-64 gb|EGP48471.1| amino acid ABC transporter/signal transduction sy... 246 2e-63 ref|YP_982301.1| extracellular solute-binding protein [Polaromon... 246 3e-63 >ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65353.1| ABC-type amino acid transport periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 260/268 (97%), Positives = 265/268 (98%) Query: 17 MKKLFNFTRKAAAVVLGLACFAQAAHADALADIKARKKVLIAIDLGAPPFGMTNAKLEPQ 76 MKKL +FTRKAAAVVLGLACFAQAAHADALADIKARKKVL+AIDLGAPPFGMTNAKLEPQ Sbjct: 1 MKKLLSFTRKAAAVVLGLACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQ 60 Query: 77 GSDVETARLLAKDMGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 136 GSDVETARLLAKD+GVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY Sbjct: 61 GSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 120 Query: 137 GASQFVVAAPKGENIKGLNDLVGKRVAVVRGNMQDSLLTPLAPKGTNIVRFDDDATVTAA 196 GASQFVVAAPKGENIK LNDLVGKRVAVVRGNMQDSLLTP+APKGTNIVRFDDDATVTAA Sbjct: 121 GASQFVVAAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAA 180 Query: 197 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITA 256 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWI+A Sbjct: 181 IISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWISA 240 Query: 257 NLKNGKLPGIYQQWVGSPMPDLAQFAPK 284 NLKNGKLPGIYQQWVGSPMPDLAQFA K Sbjct: 241 NLKNGKLPGIYQQWVGSPMPDLAQFAAK 268 >ref|YP_522302.1| extracellular solute-binding protein [Rhodoferax ferrireducens T118] gb|ABD68771.1| extracellular solute-binding protein, family 3 [Rhodoferax ferrireducens T118] Length = 265 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 139/257 (54%), Positives = 187/257 (72%) Query: 28 AAVVLGLACFAQAAHADALADIKARKKVLIAIDLGAPPFGMTNAKLEPQGSDVETARLLA 87 +A+ + L + AD LA+IK R KVL+ IDL PFG +A ++P GSDV A++LA Sbjct: 9 SALAIALVAICTSVQADTLANIKQRNKVLVGIDLTFAPFGSMDAAMKPMGSDVSAAKMLA 68 Query: 88 KDMGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPK 147 KD+GVELEIVQ+TGPNR+P+L+TGK DMVISSFSITPER+KV+ F+ PY S+ V+ APK Sbjct: 69 KDLGVELEIVQLTGPNRVPYLLTGKVDMVISSFSITPERKKVIDFSVPYSVSESVILAPK 128 Query: 148 GENIKGLNDLVGKRVAVVRGNMQDSLLTPLAPKGTNIVRFDDDATVTAAIISGQVDALCT 207 I L DL GKR+ +VRGN+Q++LL P+AP+G VRFDDDA+ A++SGQVDAL Sbjct: 129 SVQITKLQDLAGKRIGLVRGNLQENLLKPIAPEGMIPVRFDDDASNVVALLSGQVDALGG 188 Query: 208 PNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIY 267 L IAKQ+P K +E+K +I +P+ IG+RK + +L W N+W+ ANLKNG+L Y Sbjct: 189 SKELLPNIAKQSPEKQVESKLSIGILPHGIGIRKEDTSLLNWTNQWVMANLKNGRLSNSY 248 Query: 268 QQWVGSPMPDLAQFAPK 284 ++ VG P+PD++QF PK Sbjct: 249 KEAVGFPLPDMSQFMPK 265 >ref|YP_002541291.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM29694.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 270 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 133/250 (53%), Positives = 179/250 (71%), Gaps = 3/250 (1%) Query: 27 AAAVVLGLACFAQAAHADALADIKARKKVLIAIDLGAPPFGMTNAKLEPQGSDVETARLL 86 A A +LG+ A+ A AD L IK RKK+LIA+DLG+PPFGM++A ++P GSDVETA+LL Sbjct: 18 AGATILGVN--ARQALADTLETIKTRKKLLIAVDLGSPPFGMSDAAMQPTGSDVETAKLL 75 Query: 87 AKDMGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAP 146 A D+G LEIV VT PNR+PFL+T KAD+V++SFS+ ER+KV+ FT YG Q VVAAP Sbjct: 76 AADLGYPLEIVPVTSPNRVPFLLTSKADIVMASFSVNEERKKVIDFTDAYGVIQIVVAAP 135 Query: 147 KGENIKGLNDLVGKRVAVVRGNMQDSLLTPLAPKGTNIVRFDDDATVTAAIISGQVDALC 206 K NIK L D+VG+R+ RG+ D + T A +G +VR+DDDAT+ A++SGQV+ + Sbjct: 136 KSANIKTLQDVVGQRLGTTRGSTNDKVATTEA-QGAEMVRYDDDATLITALVSGQVNIMA 194 Query: 207 TPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGI 266 + + +A+ ++ S LE K +K PYAIGLRKG+ AL+ LNEWI NL NGKL I Sbjct: 195 SSPQIMAAVNQRRTSDPLEVKLVLKTNPYAIGLRKGDDALKSTLNEWIAKNLANGKLNEI 254 Query: 267 YQQWVGSPMP 276 YQ++ G+ +P Sbjct: 255 YQKYNGAALP 264 >gb|EGP48471.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Achromobacter xylosoxidans AXX-A] Length = 272 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 137/248 (55%), Positives = 171/248 (68%), Gaps = 1/248 (0%) Query: 29 AVVLGLACFAQAAHADALADIKARKKVLIAIDLGAPPFGMTNAKLEPQGSDVETARLLAK 88 A++ GLA + AAHAD L DI KK+ +AIDLG PP+GM +A L P GSDVETARLLAK Sbjct: 18 ALIGGLA-LSGAAHADQLDDIMKAKKLRVAIDLGVPPYGMKDAALNPTGSDVETARLLAK 76 Query: 89 DMGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKG 148 +GVELEIV TG NR+PFL TGKAD+VISS S+TPERQKV+ F+ PY A VV APKG Sbjct: 77 GLGVELEIVPTTGANRVPFLQTGKADIVISSMSVTPERQKVIDFSTPYAAILAVVGAPKG 136 Query: 149 ENIKGLNDLVGKRVAVVRGNMQDSLLTPLAPKGTNIVRFDDDATVTAAIISGQVDALCTP 208 + DL K+V RG D+ LT +APK I+RFDDDAT A++SGQ D T Sbjct: 137 MKLISAADLSNKKVIATRGTTNDTELTKIAPKDAQIIRFDDDATSITAVVSGQADIFATA 196 Query: 209 NSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQ 268 +L I ++ PSK +E+KF ++ AIGLRK EPAL+ L+ W+ ANLKNG+L IY+ Sbjct: 197 PALLRTINEKAPSKQMESKFVMRLNMLAIGLRKNEPALKDKLDGWVRANLKNGELNTIYK 256 Query: 269 QWVGSPMP 276 Q+ G +P Sbjct: 257 QFHGVDLP 264 >ref|YP_982301.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM37380.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 255 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 1/231 (0%) Query: 42 HADALADIKARKKVLIAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDMGVELEIVQVTG 101 HAD L DI+ KK+ IA+D G+PP+G + L+P GSDVETA+LLA+D+GV LE+VQ T Sbjct: 25 HADLLKDIREAKKIRIAVDTGSPPYGFVDDALKPVGSDVETAQLLAQDLGVALEMVQTTS 84 Query: 102 PNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKGLNDLVGKR 161 PNRIPFL TGKAD+V++S S+TPER+KVV F+ PY VVA PK +IKG +DL GKR Sbjct: 85 PNRIPFLQTGKADIVVASLSVTPEREKVVDFSTPYAQILAVVAGPKAVSIKGFDDLQGKR 144 Query: 162 VAVVRGNMQDSLLTPLAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPS 221 VA RG+ D + T L KG +VR+DDDAT+ A +SGQ D + T ++ +A+ ++P Sbjct: 145 VATTRGSNNDRVAT-LGAKGAQMVRYDDDATLVTAAVSGQADIIATSPAIVNAVLGKSPQ 203 Query: 222 KNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPGIYQQWVG 272 K+L TKF ++ +P IG+RK EP L+ WLN+W+T N +NGKL IY+++ G Sbjct: 204 KDLVTKFVMQTVPLGIGMRKNEPELKAWLNDWVTKNTQNGKLTAIYKKYHG 254