BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5030.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspir... 456 e-126 ref|YP_522303.1| ABC transporter-like protein [Rhodoferax ferrir... 330 8e-89 ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspir... 325 5e-87 ref|YP_002541292.1| amino acid ABC transporter [Agrobacterium ra... 317 1e-84 ref|YP_001415092.1| ABC transporter-like protein [Xanthobacter a... 315 4e-84 >ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65352.1| ABC-type amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 235/244 (96%), Positives = 240/244 (98%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 MSAIVKI DLHKSFGSNKVLNGVSLDV+KGQMVAIIGKSGSGKSTLLRCLNGLEKVD G+ Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTE+AK I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 AHKVLQLVGLENKK+AYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFS+PKTAELQKFV Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 Query: 241 SSDL 244 SSDL Sbjct: 241 SSDL 244 >ref|YP_522303.1| ABC transporter-like protein [Rhodoferax ferrireducens T118] gb|ABD68772.1| ABC transporter related [Rhodoferax ferrireducens T118] Length = 239 Score = 330 bits (847), Expect = 8e-89, Method: Composition-based stats. Identities = 168/238 (70%), Positives = 200/238 (84%) Query: 7 INDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHVCGH 66 + ++HK FG N VLNGVSL++E+GQ+VAIIG+SGSGKSTLLRCLNGLEK+D G+I VC Sbjct: 1 MENVHKRFGQNHVLNGVSLEIERGQVVAIIGRSGSGKSTLLRCLNGLEKIDSGSIRVCET 60 Query: 67 DIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHKVLQ 126 +++ +L LR++VGIVFQ YNLFPHLTV+RN+TLALT IKKMS EA IA KVLQ Sbjct: 61 ELNGLASKDLLRLRQRVGIVFQGYNLFPHLTVKRNVTLALTNIKKMSLAEANAIASKVLQ 120 Query: 127 LVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVMEDL 186 VG+ K EAYPE LSGGQ QRVAIARSLAM PEL+LFDEVTSALDPELT EVL+ ME+L Sbjct: 121 QVGMAEKLEAYPEMLSGGQQQRVAIARSLAMMPELILFDEVTSALDPELTGEVLRTMENL 180 Query: 187 ARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSSDL 244 AR GMTM LVTHEMAFA+K+ADVLVFMH G+VWEIG P ELF++PKT EL +F++S++ Sbjct: 181 AREGMTMTLVTHEMAFAKKVADVLVFMHAGKVWEIGSPKELFAHPKTEELNRFINSEI 238 >ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63013.1| ABC-type amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 325 bits (832), Expect = 5e-87, Method: Composition-based stats. Identities = 162/239 (67%), Positives = 204/239 (85%), Gaps = 1/239 (0%) Query: 4 IVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHV 63 IV+IN++ K FGSN+VLNG+SL VE+GQ+VAIIG+SGSGKST+LRC+NGLE +DGG+I V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHK 123 GH + H + +L ELRK VG+VFQ YNLFPHLTVE NI L+ +KK +TE A++ A K Sbjct: 63 AGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 VL+ VGL++K++AYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELTAEVLKVM Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSS 242 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P +E F++P+T E ++F+ + Sbjct: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 >ref|YP_002541292.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM29695.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 242 Score = 317 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 161/244 (65%), Positives = 195/244 (79%), Gaps = 2/244 (0%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 MS IVK+ ++HK+FG+ KVLNGVS +V +G++ A+IG+SGSGKST LRC+N LE ++ G Sbjct: 1 MSPIVKVTNVHKAFGAVKVLNGVSFEVGRGEVAAVIGQSGSGKSTALRCINALETIESGT 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I VC H +H P KL+ LR+ VGIVFQSYNLFPHLT E+NI LA T +KK+ A+ + Sbjct: 61 IEVCDHAVHDP-KLDKSALRRDVGIVFQSYNLFPHLTAEQNIMLAPTCVKKLGKAAARDL 119 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 A +VL VGLE K E +PEQLSGGQ QRVAIARSLAM P+LMLFDEVTSALDP+LT EVL Sbjct: 120 AREVLSRVGLEAKAEHFPEQLSGGQQQRVAIARSLAMKPKLMLFDEVTSALDPQLTGEVL 179 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 KVMEDLARGGMTM+LVTHEMAFARK+A +V+MHQGQVWE G P + NP+T EL++FV Sbjct: 180 KVMEDLARGGMTMILVTHEMAFARKVASKVVYMHQGQVWETG-PGAMLDNPQTKELREFV 238 Query: 241 SSDL 244 S L Sbjct: 239 GSGL 242 >ref|YP_001415092.1| ABC transporter-like protein [Xanthobacter autotrophicus Py2] gb|ABS65435.1| ABC transporter related [Xanthobacter autotrophicus Py2] Length = 242 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 159/244 (65%), Positives = 194/244 (79%), Gaps = 2/244 (0%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 MSA+V + ++ KSFG+ KVLNGVS +V +G++ A+IG+SGSGKST LRC+N LE ++GG Sbjct: 1 MSAVVSLTNVEKSFGAVKVLNGVSFEVARGEVAAVIGQSGSGKSTALRCINALETIEGGQ 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I VCGH +H P KL+ + LR+ VGIVFQSYNLFPHLT E+NI LA T +K + A+ + Sbjct: 61 IMVCGHAVHDP-KLDKKTLRRDVGIVFQSYNLFPHLTAEQNIMLAPTCVKGIGKTAARDL 119 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 A +VL VGLE K + YPEQLSGGQ QRVAIARSLAM P+LMLFDEVTSALDP+LT EVL Sbjct: 120 AREVLARVGLEAKADHYPEQLSGGQQQRVAIARSLAMQPKLMLFDEVTSALDPQLTGEVL 179 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 KVMEDLARGGMTM+LVTHEMAFARK+A +++MHQG VWE G P + +PKT EL+ FV Sbjct: 180 KVMEDLARGGMTMILVTHEMAFARKVASKVIYMHQGTVWETG-PGAMLDDPKTPELRAFV 238 Query: 241 SSDL 244 S L Sbjct: 239 GSGL 242