BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5029.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777259.1| amino acid ABC transporter permease [Herbasp... 387 e-106 ref|ZP_04681593.1| amino acid ABC transporter, permease protein,... 262 3e-68 ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax... 260 8e-68 ref|YP_003693666.1| polar amino acid ABC transporter inner membr... 249 1e-64 ref|ZP_08528169.1| ABC transporter, membrane spanning protein (a... 248 4e-64 >ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65351.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 213/216 (98%), Positives = 215/216 (99%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFMIALWRVSPNALLRGIASTYIQVVQ 60 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGF+IALWRVSPNA+LRGIAS YIQVVQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >ref|ZP_04681593.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] gb|EEQ92897.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 128/206 (62%), Positives = 170/206 (82%) Query: 3 AFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFMIALWRVSPNALLRGIASTYIQVVQGI 62 AF+ H+ +LL+ A+WTV+L+ +AF+ GG+ GF++AL R++P+ LR IA+TY+Q++QG Sbjct: 4 AFNHNHLIFLLEGALWTVILTGMAFIGGGIVGFIVALGRITPSRALRLIAATYVQLIQGT 63 Query: 63 PLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECL 122 PLLVI+F+ YFGL GF +TPL AAGIS IY +A+LGEIWRGC+++VPK QWE +ECL Sbjct: 64 PLLVIMFIIYFGLPTLGFSITPLFAAGISLTIYVSAYLGEIWRGCLESVPKAQWEGAECL 123 Query: 123 GFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQP 182 +R +++ KVILPQAV+IATPPTVGF VQIVKNTSLASV+GFV+L+RAGQ+INNS F+P Sbjct: 124 ALSRTQRMFKVILPQAVRIATPPTVGFSVQIVKNTSLASVVGFVELTRAGQLINNSIFEP 183 Query: 183 FTVFGCVALIYFCLCFPLSALSKHFE 208 F ++ VA +YFCLCFPLSA S+ E Sbjct: 184 FLIYLIVAALYFCLCFPLSAFSQRLE 209 >ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68773.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 214 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 136/212 (64%), Positives = 174/212 (82%) Query: 5 SFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFMIALWRVSPNALLRGIASTYIQVVQGIPL 64 S + ++YL AA+WTV L+L+A + G + GF IAL+RVSPN++LR ++ YIQ +QGIPL Sbjct: 3 SGIQIQYLGVAALWTVGLTLMALIGGSILGFCIALFRVSPNSVLRYLSVVYIQTIQGIPL 62 Query: 65 LVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGF 124 LV+LF+AYFG +IAGF +P V ++F++Y AA+LGEIWRGCIQ VPK QWEAS LGF Sbjct: 63 LVLLFIAYFGFSIAGFNPSPFVTVVVAFSLYSAAYLGEIWRGCIQTVPKPQWEASGSLGF 122 Query: 125 NRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFT 184 NR++QL VI+PQA +IATPPTVGF+VQ+VKNTSLAS +GF++L+RAGQI+NN+TF+PF+ Sbjct: 123 NRYQQLRLVIIPQAFRIATPPTVGFLVQLVKNTSLASTVGFIELARAGQILNNTTFKPFS 182 Query: 185 VFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 VF VAL YF LCFPLS LSK ER LNV+HR Sbjct: 183 VFLLVALFYFGLCFPLSLLSKKLERSLNVAHR 214 >ref|YP_003693666.1| polar amino acid ABC transporter inner membrane subunit [Starkeya novella DSM 506] gb|ADH89047.1| polar amino acid ABC transporter, inner membrane subunit [Starkeya novella DSM 506] Length = 220 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 123/207 (59%), Positives = 170/207 (82%) Query: 3 AFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFMIALWRVSPNALLRGIASTYIQVVQGI 62 A + H+ +L A+WT+ LS++A V GG+AGF++AL RVSP+ +R +A+TY+Q++QG Sbjct: 4 ALNVNHLLFLGHGALWTIGLSVIALVGGGLAGFLVALGRVSPSRTVRLLAATYVQLIQGT 63 Query: 63 PLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECL 122 PLLVI+F+++FGLA GF ++PL AAG S I+ AA+LGEIWRGCI+AVP+ QWEA+E L Sbjct: 64 PLLVIMFLSFFGLAAIGFNISPLAAAGASMTIFVAAYLGEIWRGCIEAVPRPQWEAAEGL 123 Query: 123 GFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQP 182 +R +++ KVILPQA++IATPPTVGFMVQI+KNTSLASV+GFV+L+R+GQIINNS F+P Sbjct: 124 ALSRSQRMVKVILPQAIRIATPPTVGFMVQIIKNTSLASVVGFVELTRSGQIINNSMFEP 183 Query: 183 FTVFGCVALIYFCLCFPLSALSKHFER 209 F ++ +A++YF LC+PLS LS+ ER Sbjct: 184 FLIYSIIAVVYFSLCYPLSRLSRRLER 210 >ref|ZP_08528169.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL65032.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 219 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 126/212 (59%), Positives = 166/212 (78%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFMIALWRVSPNALLRGIASTYIQVVQ 60 + F + +LL A WTV+L+++A + GG+ GF+IAL R S N LLR A TYIQV+Q Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALIGGGIVGFLIALARTSDNKLLRIAAGTYIQVIQ 62 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIP+L+ILF++Y+GL++AG +L PL+AAG S IY + +L EIWRGCIQAVPK QWEASE Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 L R +Q VILPQA++I+ PPTVGF VQ+VKNTS+AS+IGFV+L+RAGQ+INN+TF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLN 212 QPF VF VA++YF +C+PLS LS+ ER+L+ Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRLLERRLH 214