BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5028.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 373 e-102 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 253 1e-65 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 252 3e-65 ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax... 246 2e-63 ref|YP_001769970.1| polar amino acid ABC transporter inner membr... 241 6e-62 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 219/227 (96%), Positives = 222/227 (97%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 MNYTF+FMSVFANWDRLLMGAWLTIQLSALSI LGF VGTL AIAGKSRLALVRGLV AY Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVFLVFFGLASIGWKL+AETAAVIALTVNVGAYTTEIMRAGINSIHPGQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QSETFRSFEVYAVIAVAYL LSFLFRGAFWAISQ+AFVRKRKLGTNL Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 139/227 (61%), Positives = 174/227 (76%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M Y F+F ++ W MG WLT+QLS ++ LGFV+GTL AI V+ LV Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLLVQ+F+++FG+A++G + A AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+SR YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QS+TFRSFE Y V+ V YLALSF+ R AFW + FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 142/227 (62%), Positives = 174/227 (76%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M Y F+F + W MG WLT+QLS +S LGF++GTL AI V+ LV Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVF+V+FG+A++G ++A AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+SR YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QS+TFRSFE Y V+ V YLALSF+ R AFW + FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68774.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 227 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 137/224 (61%), Positives = 168/224 (75%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M Y FEF V A W RLL G T +LSA I GFV+GTL AI +L ++ G+V Y Sbjct: 1 MTYVFEFSDVLAAWPRLLSGLKYTAELSAAGIVFGFVLGTLSAIVRHQKLPVLNGIVSVY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTP LVQ FLVFFGL+++G +L+AE A +ALT+N GAYT EIMRAG+++ H GQ Sbjct: 61 VEAIRNTPFLVQAFLVFFGLSTLGIRLSAEFCAALALTLNAGAYTCEIMRAGLDATHKGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE LGM +YWHV+LLPA+E+VYP+LTSQF+LLML++SITSQISAEELT AN+V Sbjct: 121 IEAAESLGMGWPAIYWHVMLLPAIEKVYPALTSQFVLLMLSTSITSQISAEELTGVANIV 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLG 224 QSETFRSFEVY ++ YLALSF+FR FW + ++ F R LG Sbjct: 181 QSETFRSFEVYLLVGAIYLALSFVFRMIFWVVGKLCFTSTRVLG 224 >ref|YP_001769970.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA17536.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 134/227 (59%), Positives = 176/227 (77%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M+ +F +V W L GA LT++LS ++ A+G +G + AI +SR A +R L + Y Sbjct: 1 MSLDLDFGAVLERWPSFLDGALLTLELSGIATAVGGALGGITAIGRRSRHAALRRLCEVY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTPLLVQ+FLV+FGLAS+G++ +A T A +ALT+NVGAYTTEI+RAG+++I GQ Sbjct: 61 VEAIRNTPLLVQIFLVYFGLASLGFRFSALTVAALALTINVGAYTTEIVRAGLDAIPRGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE L +SR +Y HVVLLPA+ERVYPSLTSQF+LLMLASS+TSQISAEELTA AN + Sbjct: 121 IEAAEGLALSRAQIYRHVVLLPAIERVYPSLTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QS+T+R+FE Y V+A+ Y+ALSF+ R FW + + F R+R+LGT L Sbjct: 181 QSDTYRAFETYIVVALIYVALSFIMRAGFWGLGLVLFPRRRRLGTPL 227