BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5027.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777257.1| hypothetical protein Hsero_3871 [Herbaspiril... 604 e-171 dbj|GAA17776.1| conserved hypothetical protein [Pseudomonas aeru... 387 e-105 ref|NP_250906.1| hypothetical protein PA2216 [Pseudomonas aerugi... 386 e-105 ref|YP_791034.1| hypothetical protein PA14_36060 [Pseudomonas ae... 386 e-105 ref|ZP_04933960.1| conserved hypothetical protein [Pseudomonas a... 385 e-105 >ref|YP_003777257.1| hypothetical protein Hsero_3871 [Herbaspirillum seropedicae SmR1] gb|ADJ65349.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 296/337 (87%), Positives = 308/337 (91%) Query: 4 DGKGDLVRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLN 63 D +GD VRLIQYRD G+RRVGIVNG IQ L +V TMREL LLA++R GLER AQLLN Sbjct: 3 DRQGDPVRLIQYRDRAGERRVGIVNGGQIQALDQVATMRELALLALQRGIGLERQAQLLN 62 Query: 64 TDRSEDYAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTD 123 TDR EDYAAILAEGRILAPLDHPDPAHCR+SGAGTTHLGSATTRDKMHRRIEGDELDKTD Sbjct: 63 TDRCEDYAAILAEGRILAPLDHPDPAHCRISGAGTTHLGSATTRDKMHRRIEGDELDKTD 122 Query: 124 TQLMIEWGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLY 183 TQLMIEWGIAGGRPA G GVQPEWFYKGDG IVAPG LPRPDFALDGGEEPEIVGLY Sbjct: 123 TQLMIEWGIAGGRPAAGEAGVQPEWFYKGDGSSIVAPGAALPRPDFALDGGEEPEIVGLY 182 Query: 184 LIDDAGCPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTR 243 LID+ GCPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHC+FGPELLVGLPPAHLVGMTR Sbjct: 183 LIDEEGCPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCSFGPELLVGLPPAHLVGMTR 242 Query: 244 IRRRGRVIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVR 303 IRR GRVIWEQEFLTGPDNMCHSIENLEYH FKY+HLLHAGDVH H+MGAANLSFAYSVR Sbjct: 243 IRRNGRVIWEQEFLTGPDNMCHSIENLEYHYFKYSHLLHAGDVHVHYMGAANLSFAYSVR 302 Query: 304 TEDGDSIEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 340 TEDGDSIEISIPDFGAPLVNGI HV+S RPGGV+ L Sbjct: 303 TEDGDSIEISIPDFGAPLVNGIAHVKSAFRPGGVKPL 339 >dbj|GAA17776.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179] Length = 331 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 196/331 (59%), Positives = 232/331 (70%) Query: 10 VRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLNTDRSED 69 +RLIQ+ D GQRRVG+V GA IQVL V + RELGL AI +GL+ ++ D Sbjct: 1 MRLIQFEDRAGQRRVGVVEGAGIQVLRGVRSTRELGLAAIRAGSGLQDEVLRRGSEPGPD 60 Query: 70 YAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 129 YA +L EGR+L PLDH DPAHC VSG G THLGSA TRD+MH++ +GDE TDT + Sbjct: 61 YAGLLEEGRVLPPLDHDDPAHCLVSGTGLTHLGSAATRDRMHQQNQGDETALTDTMRIFR 120 Query: 130 WGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLYLIDDAG 189 WG+ GG+P G VG QPEWFYKGDG +V PG P P FA D GEEPE+VGLYLI D Sbjct: 121 WGLEGGKPPAGQVGAQPEWFYKGDGGIVVRPGADFPLPAFAEDAGEEPELVGLYLIGDDR 180 Query: 190 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTRIRRRGR 249 P RLG+A+GNEFSDH+MERRNYLY HSKLR C +GPEL VG P HL G +RI R G Sbjct: 181 RPYRLGYALGNEFSDHLMERRNYLYLAHSKLRACCYGPELRVGELPRHLQGESRILRDGE 240 Query: 250 VIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVRTEDGDS 309 V+W+Q FL+G DNMCHS+ENLEYH FKYA L GDVH H+ G A LSFA ++ GD Sbjct: 241 VLWQQAFLSGEDNMCHSLENLEYHHFKYAQFLRPGDVHVHYFGTATLSFADGIKAAPGDV 300 Query: 310 IEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 340 EI++ +FGAPL NGI V++ L PG V L Sbjct: 301 FEIAMAEFGAPLRNGIAAVETALTPGRVVAL 331 >ref|NP_250906.1| hypothetical protein PA2216 [Pseudomonas aeruginosa PAO1] ref|ZP_01365561.1| hypothetical protein PaerPA_01002687 [Pseudomonas aeruginosa PACS2] ref|YP_002440698.1| hypothetical protein PLES_31091 [Pseudomonas aeruginosa LESB58] ref|ZP_04928565.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] ref|ZP_06878845.1| hypothetical protein PaerPAb_14521 [Pseudomonas aeruginosa PAb1] gb|AAG05604.1|AE004648_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gb|EAZ52684.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] emb|CAW27836.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gb|EGM15977.1| hypothetical protein PA15_22712 [Pseudomonas aeruginosa 152504] gb|AEO75302.1| hypothetical protein PAM18_2819 [Pseudomonas aeruginosa M18] Length = 331 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 196/331 (59%), Positives = 231/331 (69%) Query: 10 VRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLNTDRSED 69 +RLIQ+ D GQRRVG+V GA IQVL V + RELGL AI +GL ++ D Sbjct: 1 MRLIQFEDRAGQRRVGVVEGAGIQVLRGVRSTRELGLAAIRAGSGLHDEVLRRGSEPGPD 60 Query: 70 YAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 129 YA +L EGR+L PLDH DPAHC VSG G THLGSA TRD+MH++ +GDE TDT + Sbjct: 61 YAGLLEEGRVLPPLDHDDPAHCLVSGTGLTHLGSAATRDRMHQQNQGDETALTDTMRIFR 120 Query: 130 WGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLYLIDDAG 189 WG+ GG+P G VG QPEWFYKGDG +V PG P P FA D GEEPE+VGLYLI D Sbjct: 121 WGLEGGKPPAGQVGAQPEWFYKGDGGIVVRPGADFPLPAFAEDAGEEPELVGLYLIGDDR 180 Query: 190 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTRIRRRGR 249 P RLG+A+GNEFSDH+MERRNYLY HSKLR C +GPEL VG P HL G +RI R G Sbjct: 181 RPYRLGYALGNEFSDHLMERRNYLYLAHSKLRACCYGPELRVGELPRHLQGESRILRDGE 240 Query: 250 VIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVRTEDGDS 309 V+W+Q FL+G DNMCHS+ENLEYH FKYA L GDVH H+ G A LSFA ++ GD Sbjct: 241 VLWQQAFLSGEDNMCHSLENLEYHHFKYAQFLRPGDVHVHYFGTATLSFADGIKAAPGDV 300 Query: 310 IEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 340 EI++ +FGAPL NGI V++ L PG V L Sbjct: 301 FEIAMAEFGAPLRNGIAAVETALTPGRVVAL 331 >ref|YP_791034.1| hypothetical protein PA14_36060 [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ11385.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 331 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 196/331 (59%), Positives = 231/331 (69%) Query: 10 VRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLNTDRSED 69 +RLIQ+ D GQRRVG+V GA IQVL V + RELGL AI +GL ++ D Sbjct: 1 MRLIQFEDRAGQRRVGVVEGAGIQVLRGVRSTRELGLAAIRAGSGLHDEVLRRGSEPGPD 60 Query: 70 YAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 129 YA +L EGR+L PLDH DPAHC VSG G THLGSA TRD+MH++ +GDE TDT + Sbjct: 61 YAGLLEEGRVLPPLDHDDPAHCLVSGTGLTHLGSAATRDRMHQQNQGDETALTDTMRIFR 120 Query: 130 WGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLYLIDDAG 189 WG+ GG+P G VG QPEWFYKGDG +V PG P P FA D GEEPE+VGLYLI D Sbjct: 121 WGLEGGKPPAGQVGAQPEWFYKGDGGIVVRPGADFPLPAFAEDAGEEPELVGLYLIGDDR 180 Query: 190 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTRIRRRGR 249 P RLG+A+GNEFSDH+MERRNYLY HSKLR C +GPEL VG P HL G +RI R G Sbjct: 181 RPYRLGYALGNEFSDHLMERRNYLYLAHSKLRACCYGPELRVGELPRHLQGESRILRDGE 240 Query: 250 VIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVRTEDGDS 309 V+W+Q FL+G DNMCHS+ENLEYH FKYA L GDVH H+ G A LSFA ++ GD Sbjct: 241 VLWQQAFLSGEDNMCHSLENLEYHHFKYAQFLRPGDVHVHYFGTATLSFADGIKAAPGDV 300 Query: 310 IEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 340 EI++ +FGAPL NGI V++ L PG V L Sbjct: 301 FEIAMTEFGAPLRNGIAAVETALTPGRVVAL 331 >ref|ZP_04933960.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gb|EAZ58079.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 331 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 196/331 (59%), Positives = 230/331 (69%) Query: 10 VRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLNTDRSED 69 +RLIQ+ D GQRRVG+V GA IQVL V + RELGL AI +GL ++ D Sbjct: 1 MRLIQFEDRAGQRRVGVVEGAGIQVLRGVRSTRELGLAAIRAGSGLHDEVLRRGSEPGPD 60 Query: 70 YAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 129 YA +L EGR+L PLDH DPAHC VSG G THLGSA TRD+MH+ +GDE TDT + Sbjct: 61 YAGLLEEGRVLPPLDHDDPAHCLVSGTGLTHLGSAATRDRMHQHNQGDETALTDTMRIFR 120 Query: 130 WGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLYLIDDAG 189 WG+ GG+P G VG QPEWFYKGDG +V PG P P FA D GEEPE+VGLYLI D Sbjct: 121 WGLEGGKPPAGQVGAQPEWFYKGDGGIVVRPGADFPLPAFAEDAGEEPELVGLYLIGDDR 180 Query: 190 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTRIRRRGR 249 P RLG+A+GNEFSDH+MERRNYLY HSKLR C +GPEL VG P HL G +RI R G Sbjct: 181 RPYRLGYALGNEFSDHLMERRNYLYLAHSKLRACCYGPELRVGELPRHLQGESRILRDGE 240 Query: 250 VIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVRTEDGDS 309 V+W+Q FL+G DNMCHS+ENLEYH FKYA L GDVH H+ G A LSFA ++ GD Sbjct: 241 VLWQQAFLSGEDNMCHSLENLEYHHFKYAQFLRPGDVHVHYFGTATLSFADGIKAAPGDV 300 Query: 310 IEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 340 EI++ +FGAPL NGI V++ L PG V L Sbjct: 301 FEIAMAEFGAPLRNGIAAVETALTPGRVVAL 331