BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5026.p         (168 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777256.1| LysR family transcription regulator protein ...   223   9e-57
ref|YP_001863148.1| LysR family transcriptional regulator [Burkh...   123   8e-27
ref|YP_004476029.1| LysR family transcriptional regulator [Pseud...   123   1e-26
ref|YP_003773579.1| LysR family transcription regulator protein ...   122   2e-26
ref|YP_004378053.1| LysR family transcription regulator protein ...   121   4e-26

>ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65348.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  223 bits (567), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 123/152 (80%), Positives = 129/152 (84%), Gaps = 5/152 (3%)

Query: 1   MSNELNSSGDNRLGEEGAAGDALPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMT 60
           MSNELNSSGDNRLGE       LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMT
Sbjct: 1   MSNELNSSGDNRLGE---GASELPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMT 57

Query: 61  QPAATKALHEMESALGVTLFDRSTRGIEATELGRCVIRYARLIQSDVANLREELQGMLTG 120
           QPAATKALHEME ALGVTLFDRS RGIEATELGRCVIRYARLIQSDVANLR+ELQ M++G
Sbjct: 58  QPAATKALHEMEDALGVTLFDRSPRGIEATELGRCVIRYARLIQSDVANLRDELQNMISG 117

Query: 121 QGGRLSIGTIMGRAR--CRACARSSRTSPSRS 150
           +GGRL+IGTIMG A    RA +R     P  S
Sbjct: 118 RGGRLAIGTIMGAAPFVTRALSRLREIQPEVS 149


>ref|YP_001863148.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC76102.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/110 (63%), Positives = 88/110 (80%)

Query: 23  LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 82
           LP+V SIV+RLR +Q+ LL ALDE GSLH+AA+ M +TQP ATKAL E+E+  G TLF R
Sbjct: 2   LPNVDSIVARLRLKQLRLLIALDEHGSLHRAADQMALTQPGATKALREIEATFGATLFTR 61

Query: 83  STRGIEATELGRCVIRYARLIQSDVANLREELQGMLTGQGGRLSIGTIMG 132
           S +GI+  ELGRCV+RYARLI  DVA+LREE++G+L G GGRL++G I G
Sbjct: 62  SPQGIQPNELGRCVVRYARLIHMDVAHLREEMEGILQGSGGRLAVGAITG 111


>ref|YP_004476029.1| LysR family transcriptional regulator [Pseudomonas fulva 12-X]
 gb|AEF23935.1| transcriptional regulator, LysR family [Pseudomonas fulva 12-X]
          Length = 318

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 98/130 (75%), Gaps = 6/130 (4%)

Query: 23  LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 82
           L S+ ++VSRLR +Q+ LL ALDEQGSLHKAA+V+ ++QP ATKAL+E+ESA G  LF R
Sbjct: 6   LASLPALVSRLRLKQLRLLIALDEQGSLHKAADVVAISQPGATKALNEIESAFGTRLFTR 65

Query: 83  STRGIEATELGRCVIRYARLIQSDVANLREELQGMLTGQGGRLSIGTIMG------RARC 136
           +++G+EA +LGRC IRYARLI SD+A+LREE+ G+L GQGGRL +G IMG      RA  
Sbjct: 66  TSQGLEANDLGRCAIRYARLIHSDLAHLREEMLGILQGQGGRLVVGVIMGAVPHLTRALS 125

Query: 137 RACARSSRTS 146
           R  AR    S
Sbjct: 126 RLRARQPELS 135


>ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61671.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 314

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/112 (61%), Positives = 87/112 (77%)

Query: 21  DALPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLF 80
           + LPS+ SI SRL  RQ+ LL AL + GSL KAAE + +TQP A+KAL E+ES LGV LF
Sbjct: 3   NTLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLF 62

Query: 81  DRSTRGIEATELGRCVIRYARLIQSDVANLREELQGMLTGQGGRLSIGTIMG 132
            R+ RG+E TELG CVIRYARLIQ+D+ +LREE+  ++ G GGRL++GTIMG
Sbjct: 63  TRTNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMG 114


>ref|YP_004378053.1| LysR family transcription regulator protein [Pseudomonas mendocina
           NK-01]
 gb|AEB56301.1| LysR family transcription regulator protein [Pseudomonas mendocina
           NK-01]
          Length = 310

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 88/110 (80%)

Query: 23  LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 82
           LPSV SI SRLRFRQ+ LL AL EQGSL KAAE++ ++QP ATKAL E+E+ LG  LF R
Sbjct: 2   LPSVSSIFSRLRFRQLRLLIALGEQGSLIKAAELVSISQPGATKALQEIETTLGAPLFVR 61

Query: 83  STRGIEATELGRCVIRYARLIQSDVANLREELQGMLTGQGGRLSIGTIMG 132
           + RG+EA ELG C IRYA+LIQ+D+ +LREE+ G+L G GGRLS+G IMG
Sbjct: 62  TNRGLEANELGHCAIRYAKLIQTDLTHLREEMLGILQGHGGRLSVGVIMG 111