BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5025.p (153 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777256.1| LysR family transcription regulator protein ... 301 2e-80 ref|ZP_02887338.1| transcriptional regulator, LysR family [Burkh... 126 1e-27 ref|YP_003774793.1| LysR family transcription regulator protein ... 125 2e-27 ref|YP_001888319.1| LysR family transcriptional regulator [Burkh... 124 3e-27 ref|YP_004378053.1| LysR family transcription regulator protein ... 124 7e-27 >ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65348.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 150/153 (98%), Positives = 153/153 (100%) Query: 1 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELADASWILYSSNMPMR 60 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELA+ASWILYSSNMPMR Sbjct: 172 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELAEASWILYSSNMPMR 231 Query: 61 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAARQMLGILPVN 120 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAA+QMLGILPVN Sbjct: 232 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAAKQMLGILPVN 291 Query: 121 LKTRIEHYGIVTRKNSTLSSLAKMFIQILRQQN 153 LKTRIEHYGIVTRKN+TLSSLAKMFIQILRQQN Sbjct: 292 LKTRIEHYGIVTRKNTTLSSLAKMFIQILRQQN 324 >ref|ZP_02887338.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT07044.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 332 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 1 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELADASWILYSSNMPMR 60 MIGR++V++ P+ Y Y L EP+ +V G HP ++V+L +LAD W++Y S+MP+ Sbjct: 155 MIGRAAVAADPSKYQYRPLADEPLSVVVGYGHPPLPRKEVKLGDLADHRWVMYPSHMPLH 214 Query: 61 IWIEHEFKLEGVKVPGNVIETASPFVTITLL-AQSNMVAVMPLDIAHFFAARQMLGILPV 119 +E E L G+ +P N I TAS FVT+ LL +++++V+++P IA F ++ML +PV Sbjct: 215 ALLEREMDLAGLTMPDNPISTASTFVTVALLQSRADLVSLLPTAIAEMFIRQKMLRAVPV 274 Query: 120 NLKTRIEHYGIVTRKNSTLSSLAKMFIQILRQQ 152 LK+ + +G+VTRK LS A+ F+++LRQ Sbjct: 275 KLKSPSQTFGVVTRKGGVLSPPAERFVELLRQH 307 >ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62885.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 1 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELADASWILYSSNMPMR 60 ++ R+SVS+ P YHY+ L EP+ +V +HP ++++L LA WI Y S+MP+ Sbjct: 167 LVARASVSAHPGKYHYQSLSEEPLSVVVSAEHPRPRGKELQLAALAGYRWITYPSHMPLH 226 Query: 61 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQ-SNMVAVMPLDIAHFFAARQMLGILPV 119 +E E L G+ +P N I TAS FVT+ LL Q ++MV+++P +A F R ML ILPV Sbjct: 227 AVLEREMDLAGLSMPANTIATASTFVTVALLQQGADMVSILPTAVAEMFVQRGMLRILPV 286 Query: 120 NLKTRIEHYGIVTRKNSTLSSLAKMFIQILRQ 151 L++ + GIVTRK LS + F+Q+LR+ Sbjct: 287 KLRSMSQTIGIVTRKGGQLSGAGQAFVQLLRE 318 >ref|YP_001888319.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18949.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 327 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 1 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELADASWILYSSNMPMR 60 +IGR++V++ P+ YHY L EP+ +V G HP ++V+L++LA W++Y S+MP+ Sbjct: 155 VIGRATVAADPSKYHYRPLGDEPLSVVVGYGHPPLPKKEVKLRDLAGHRWVMYPSHMPLH 214 Query: 61 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQS-NMVAVMPLDIAHFFAARQMLGILPV 119 +E E L G+++P N + TAS FVT+ LL S ++V+++P IA F ++ML ++PV Sbjct: 215 ALLEREMDLAGLQMPDNPVSTASTFVTVALLQSSHDLVSLLPTAIAALFVRQKMLRLVPV 274 Query: 120 NLKTRIEHYGIVTRKNSTLSSLAKMFIQILRQQ 152 LK+ + +GIVTRK LS A+ FI++L Q Sbjct: 275 KLKSPSQTFGIVTRKGGVLSPPAEQFIELLCAQ 307 >ref|YP_004378053.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] gb|AEB56301.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] Length = 310 Score = 124 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 2 IGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELADASWILYSSNMPMRI 61 I R+S+S QP Y +R E + +V+ DHPLA ++ L +LAD+ W++YS+NMPMR+ Sbjct: 155 ICRTSISRQPEQYDCIDVRDETLAVVANRDHPLAGRAQLELADLADSRWVVYSANMPMRL 214 Query: 62 WIEHEFKLEGVKVPGNVIETASPFVTITLLAQS-NMVAVMPLDIAHFFAARQMLGILPVN 120 +E EF+ G++ P +++ET S F T++LL ++ +VA++ D+A F M ILP+ Sbjct: 215 SLEREFQQAGLRFPLHLLETTSAFTTLSLLQKNPELVALLSTDVARFCTGFGMTCILPLQ 274 Query: 121 LKTRIEHYGIVTRKNSTLSSLAKMFIQIL 149 LK+R E Y ++TR+ +LSS++++FI+ L Sbjct: 275 LKSRSEPYQLITRRGVSLSSISRLFIEQL 303