BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5024.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seroped... 1009 0.0 emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATP... 1007 0.0 ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans... 884 0.0 ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. ... 847 0.0 ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenico... 840 0.0 >ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1009 bits (2609), Expect = 0.0, Method: Composition-based stats. Identities = 532/546 (97%), Positives = 539/546 (98%) Query: 1 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 60 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM Sbjct: 287 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 346 Query: 61 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 120 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI Sbjct: 347 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 406 Query: 121 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 180 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG Sbjct: 407 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 466 Query: 181 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 240 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII Sbjct: 467 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 526 Query: 241 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 300 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY Sbjct: 527 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 586 Query: 301 MMQIALNDAEIKPSEGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVA 360 MMQIALNDAEIKP+E A I+GEALVELARQYNTANAIIMRL+RAIDESAL+AIMTGGV Sbjct: 587 MMQIALNDAEIKPAEDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVV 646 Query: 361 LKMDNIEQATATAEELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFV 420 LKMDN+EQATATAEELKKAINDINIDVQAR+DEHSEKVALHIHRRQHGNIKATVIDADFV Sbjct: 647 LKMDNLEQATATAEELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFV 706 Query: 421 SGPDYQQLSTAAETFKGLIGKGAIVARGQGEKRKESVITEFRQAMAWLRDEAERGVNKQR 480 SGPDYQ LSTAAETFKGLI KGA VARGQGEKRKESVIT+FRQAMAWLRDEAERGVNKQR Sbjct: 707 SGPDYQVLSTAAETFKGLIRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQR 766 Query: 481 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 540 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ Sbjct: 767 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 826 Query: 541 AGNIDV 546 AGNIDV Sbjct: 827 AGNIDV 832 >emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity, protein [Herbaspirillum seropedicae] Length = 832 Score = 1007 bits (2603), Expect = 0.0, Method: Composition-based stats. Identities = 531/546 (97%), Positives = 538/546 (98%) Query: 1 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 60 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM Sbjct: 287 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 346 Query: 61 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 120 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI Sbjct: 347 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 406 Query: 121 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 180 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG Sbjct: 407 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 466 Query: 181 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 240 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII Sbjct: 467 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 526 Query: 241 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 300 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY Sbjct: 527 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 586 Query: 301 MMQIALNDAEIKPSEGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVA 360 MMQIALNDAEIKP+E A I+GEALVELARQYNTANAIIMRL+RAIDESAL+AIMTGGV Sbjct: 587 MMQIALNDAEIKPAEDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVV 646 Query: 361 LKMDNIEQATATAEELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFV 420 LKMDN+EQATATAEELKKAINDINIDVQAR+DEHSEKVALHIHRRQHGNIKATVIDADFV Sbjct: 647 LKMDNLEQATATAEELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFV 706 Query: 421 SGPDYQQLSTAAETFKGLIGKGAIVARGQGEKRKESVITEFRQAMAWLRDEAERGVNKQR 480 SGPDYQ LSTAAETFKGLI KGA VARGQ EKRKESVIT+FRQAMAWLRDEAERGVNKQR Sbjct: 707 SGPDYQVLSTAAETFKGLIRKGATVARGQCEKRKESVITDFRQAMAWLRDEAERGVNKQR 766 Query: 481 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 540 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ Sbjct: 767 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 826 Query: 541 AGNIDV 546 AGNIDV Sbjct: 827 AGNIDV 832 >ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] Length = 826 Score = 884 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 458/546 (83%), Positives = 491/546 (89%), Gaps = 1/546 (0%) Query: 1 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 60 MQWNDA+NEQVLCFTNNIPQRDGGTHLTGLRAAMTR++NKYIEE+D AKKAKVE SGDDM Sbjct: 282 MQWNDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRILNKYIEEHDFAKKAKVETSGDDM 341 Query: 61 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 120 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVR PVEEIVAKTL D+L E+PNDAKIICGKI Sbjct: 342 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEIVAKTLNDYLQERPNDAKIICGKI 401 Query: 121 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 180 VEAARAR+AARKARELTRRKGVMDGLGLSSKLADCQE+DPALCELYIVEGDSAGGSAKQG Sbjct: 402 VEAARARDAARKARELTRRKGVMDGLGLSSKLADCQEKDPALCELYIVEGDSAGGSAKQG 461 Query: 181 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 240 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFN DKLRYHRIII Sbjct: 462 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNADKLRYHRIII 521 Query: 241 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 300 MTDADVDGAHIRTLLLTLFYRQMP LVERGHIYIAQPPLYKVK GKDERYLKDD EE Y Sbjct: 522 MTDADVDGAHIRTLLLTLFYRQMPQLVERGHIYIAQPPLYKVKHGKDERYLKDDAEEVSY 581 Query: 301 MMQIALNDAEIKPSEGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVA 360 MMQ+ALNDA + PSEGA PISG AL EL RQYN AN+II RL+RA+D +AL +IMT GV Sbjct: 582 MMQVALNDAALVPSEGALPISGPALAELVRQYNMANSIITRLTRAVDGAALTSIMT-GVT 640 Query: 361 LKMDNIEQATATAEELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFV 420 LK+D + A A+A+ L+ +IN+ ++ V + DE S+K AL I RR HGNIK + ID+DFV Sbjct: 641 LKLDTLADAEASAQALQASINEPSVQVVVKSDELSDKHALRIQRRYHGNIKVSAIDSDFV 700 Query: 421 SGPDYQQLSTAAETFKGLIGKGAIVARGQGEKRKESVITEFRQAMAWLRDEAERGVNKQR 480 + PDY L AAETFKGLIG GA++ RG GEK KES I +F QAMAWLRDEAERGV+KQR Sbjct: 701 ASPDYTVLVNAAETFKGLIGPGALIRRGAGEKVKESAIIDFHQAMAWLRDEAERGVSKQR 760 Query: 481 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 540 YKGLGEMNP QLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIE NALQ Sbjct: 761 YKGLGEMNPSQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQ 820 Query: 541 AGNIDV 546 AGNIDV Sbjct: 821 AGNIDV 826 >ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 449/546 (82%), Positives = 487/546 (89%), Gaps = 1/546 (0%) Query: 1 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 60 MQWNDA+NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYI+E++ AKKAKVEISGDDM Sbjct: 288 MQWNDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDM 347 Query: 61 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 120 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTL D+L EKPNDAKIICGKI Sbjct: 348 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKI 407 Query: 121 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 180 VEAARAREAARKAR+LTRRKGVMDGLGLS+KLADCQE+DPALCELY+VEGDSAGGSAKQG Sbjct: 408 VEAARAREAARKARDLTRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQG 467 Query: 181 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 240 RDRKFQAILPLRGKVLNVEKARFEKML+SEQITTLIATLGTSIGADEFN +KLRYHRIII Sbjct: 468 RDRKFQAILPLRGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIII 527 Query: 241 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 300 MTDADVDGAHIRTLLLTL YRQMP LVERGH+YIAQPPLYKVK GKDERYLKDD EEA Y Sbjct: 528 MTDADVDGAHIRTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVY 587 Query: 301 MMQIALNDAEIKPSEGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVA 360 MMQIALNDA + PSEGA PI+G+AL EL RQYN ANAII RL+RA+D +AL AIMT GV Sbjct: 588 MMQIALNDAALIPSEGAQPIAGDALAELVRQYNMANAIINRLTRAVDGAALTAIMT-GVT 646 Query: 361 LKMDNIEQATATAEELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFV 420 L + ++E A A+A+ L++ IN+ + V + DE S K L I+R HGN+KA+ ID+DFV Sbjct: 647 LDLSSVEAAQASAQRLEQGINEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFV 706 Query: 421 SGPDYQQLSTAAETFKGLIGKGAIVARGQGEKRKESVITEFRQAMAWLRDEAERGVNKQR 480 +GPDY L+ AA TFKGLIG GA+V RG GEK K S I++F QAM WLR EAER V KQR Sbjct: 707 TGPDYTVLAAAAATFKGLIGPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQR 766 Query: 481 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 540 YKGLGEMNPEQLWETTMDP VRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIE NAL Sbjct: 767 YKGLGEMNPEQLWETTMDPAVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALS 826 Query: 541 AGNIDV 546 AGNID+ Sbjct: 827 AGNIDI 832 >ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Length = 835 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 445/546 (81%), Positives = 485/546 (88%), Gaps = 1/546 (0%) Query: 1 MQWNDAFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDM 60 MQWNDA+NEQV+CFTNNIPQRDGGTHLTGLRAAMTRVINKYI+E++ AKKAKVE++GDDM Sbjct: 291 MQWNDAYNEQVICFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDM 350 Query: 61 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKI 120 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTL D+L EKPNDAKIICGKI Sbjct: 351 REGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKI 410 Query: 121 VEAARAREAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQG 180 VEAARAREAARKAR+LTRRKGVMDGLGLSSKLADCQE+DPALCELY+VEGDSAGGSAKQG Sbjct: 411 VEAARAREAARKARDLTRRKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQG 470 Query: 181 RDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIII 240 RDRKFQAILPLRGKVLNVEKARFEKML+SEQITTLIATLGTSIGADEFN +KLRYHRIII Sbjct: 471 RDRKFQAILPLRGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIII 530 Query: 241 MTDADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQY 300 MTDADVDGAHIRTLLLTL YRQMP LVERGH+YIAQPPLYKVK GKDERYLKDD EEA Y Sbjct: 531 MTDADVDGAHIRTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVY 590 Query: 301 MMQIALNDAEIKPSEGAAPISGEALVELARQYNTANAIIMRLSRAIDESALNAIMTGGVA 360 MMQIALNDA + P+EGA PISG+AL EL RQYNT+NAII RL+R +D +AL AIMT GV Sbjct: 591 MMQIALNDAALVPAEGAEPISGDALAELVRQYNTSNAIINRLTRMVDGAALTAIMT-GVT 649 Query: 361 LKMDNIEQATATAEELKKAINDINIDVQARVDEHSEKVALHIHRRQHGNIKATVIDADFV 420 L + + E A A+A+ L+ I + +++V R DE +EK +L IHR HGNIK + IDA+FV Sbjct: 650 LDLSSQEAANASAQRLQDGIGEPSVEVIVRHDELAEKFSLRIHRMYHGNIKVSAIDAEFV 709 Query: 421 SGPDYQQLSTAAETFKGLIGKGAIVARGQGEKRKESVITEFRQAMAWLRDEAERGVNKQR 480 +G DY+ L+ AA TFKGLIG GA+V RG GEK K I +F QAM WLR EAER V KQR Sbjct: 710 NGADYRVLAAAAATFKGLIGTGAMVQRGVGEKVKSIGINDFHQAMNWLRSEAERNVGKQR 769 Query: 481 YKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQ 540 YKGLGEMNP QLWETTMDPTVRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIE NAL Sbjct: 770 YKGLGEMNPSQLWETTMDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALS 829 Query: 541 AGNIDV 546 AGNID+ Sbjct: 830 AGNIDI 835