BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5023.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777255.1| hypothetical protein Hsero_3869 [Herbaspiril...   207   5e-52
ref|YP_001098577.1| hypothetical protein HEAR0219 [Herminiimonas...   149   1e-34
ref|YP_001351962.1| hypothetical protein mma_0272 [Janthinobacte...   148   3e-34
ref|YP_001797425.1| hypothetical protein Pnec_0551 [Polynucleoba...   134   5e-30
ref|YP_002006748.1| hypothetical protein RALTA_A2757 [Cupriavidu...   127   6e-28

>ref|YP_003777255.1| hypothetical protein Hsero_3869 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65347.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  207 bits (526), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 100/116 (86%), Positives = 104/116 (89%), Gaps = 1/116 (0%)

Query: 1   MDTILFDTAKLLTGHELPYATLMYVWDPKVPVGTVIANGRTGRIQMLVVESGAEHVGQWR 60
           MDTILFDTAKLLTGHELPYATLMYVWD K  VGTVIANGRTGRIQM+V ESG  HVGQWR
Sbjct: 171 MDTILFDTAKLLTGHELPYATLMYVWDSKAEVGTVIANGRTGRIQMMVAESGPAHVGQWR 230

Query: 61  NYQRNVAEDYERAFGEKPGRLIGVGVLTDTDNTVQKMEAWYGDIRLMRDA-QAVPA 115
            YQRNVAEDYER FGEKPGRL+GVGVLTDTDNT QKMEAWYGDIRLMRD   ++PA
Sbjct: 231 RYQRNVAEDYERIFGEKPGRLVGVGVLTDTDNTSQKMEAWYGDIRLMRDPDHSMPA 286


>ref|YP_001098577.1| hypothetical protein HEAR0219 [Herminiimonas arsenicoxydans]
 emb|CAL60448.1| conserved hypothetical protein; putative exported protein
           [Herminiimonas arsenicoxydans]
          Length = 262

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/105 (64%), Positives = 85/105 (80%)

Query: 2   DTILFDTAKLLTGHELPYATLMYVWDPKVPVGTVIANGRTGRIQMLVVESGAEHVGQWRN 61
           D I+F+TA+++TG ELPYATLMY+W  + PV TVI N R+ RI+M+V  SG + VG+W+ 
Sbjct: 154 DQIMFETARMVTGRELPYATLMYIWGRRAPVDTVIPNTRSNRIKMIVAASGEDGVGEWQA 213

Query: 62  YQRNVAEDYERAFGEKPGRLIGVGVLTDTDNTVQKMEAWYGDIRL 106
             R++  DYERAFGEKPGRLIGVGVLTDTDNT + +EAWYGDIRL
Sbjct: 214 IARDIVADYERAFGEKPGRLIGVGVLTDTDNTGETVEAWYGDIRL 258


>ref|YP_001351962.1| hypothetical protein mma_0272 [Janthinobacterium sp. Marseille]
 gb|ABR90996.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 85/105 (80%)

Query: 2   DTILFDTAKLLTGHELPYATLMYVWDPKVPVGTVIANGRTGRIQMLVVESGAEHVGQWRN 61
           D I+F+TA+L+TG ++PYATLMY+W  K PV T+I N R+ R++M+V E+GA  VG W +
Sbjct: 141 DQIMFETARLMTGRDVPYATLMYIWGRKAPVDTIITNTRSNRVKMIVAETGASGVGDWHS 200

Query: 62  YQRNVAEDYERAFGEKPGRLIGVGVLTDTDNTVQKMEAWYGDIRL 106
           + RN+A DYE+AFGEKPGRLI VGVLTDTDNT + +EAWYGDI L
Sbjct: 201 FSRNIAADYEKAFGEKPGRLIAVGVLTDTDNTGETVEAWYGDIGL 245


>ref|YP_001797425.1| hypothetical protein Pnec_0551 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gb|ACB43811.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 265

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 82/107 (76%)

Query: 2   DTILFDTAKLLTGHELPYATLMYVWDPKVPVGTVIANGRTGRIQMLVVESGAEHVGQWRN 61
           + + F+ A L++G E+PYATLMY+W  K PVGT+I N  T RI+M+VV+SG +++GQW  
Sbjct: 155 EKMTFEMANLISGQEMPYATLMYIWSCKSPVGTIITNAHTSRIKMIVVDSGWDNLGQWHK 214

Query: 62  YQRNVAEDYERAFGEKPGRLIGVGVLTDTDNTVQKMEAWYGDIRLMR 108
           +QR++A DY+ A+GE PG +IG+ +LTDTDNT  +  A+YGDI L+R
Sbjct: 215 HQRDLAADYKMAYGETPGEVIGIALLTDTDNTKSEARAFYGDIELIR 261


>ref|YP_002006748.1| hypothetical protein RALTA_A2757 [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ70687.1| conserved hypothetical protein; putative exported protein; putative
           lipoprotein [Cupriavidus taiwanensis LMG 19424]
          Length = 315

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 78/105 (74%)

Query: 2   DTILFDTAKLLTGHELPYATLMYVWDPKVPVGTVIANGRTGRIQMLVVESGAEHVGQWRN 61
           D ++++ A+L TG E+PYATLMY+W  + P G ++ N  T R++M+VV+SG +H  QWR 
Sbjct: 210 DQLMYEMARLTTGREMPYATLMYIWGGQRPEGALVKNPHTDRVRMIVVDSGTKHANQWRC 269

Query: 62  YQRNVAEDYERAFGEKPGRLIGVGVLTDTDNTVQKMEAWYGDIRL 106
           ++R++  DY +AFG  PGR+I VG++TDTDNT  + EAWYGDI L
Sbjct: 270 HERDLRADYRKAFGTDPGRVIAVGIMTDTDNTKSQAEAWYGDIAL 314