BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5020.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777253.1| hypothetical protein Hsero_3867 [Herbaspiril...   128   4e-28
ref|ZP_06639968.1| conserved hypothetical protein [Serratia odor...   104   4e-21
ref|YP_003009302.1| hypothetical protein Pjdr2_0536 [Paenibacill...   103   8e-21
ref|ZP_06066997.1| conserved hypothetical protein [Acinetobacter...   101   3e-20
ref|ZP_02167421.1| hypothetical protein HPDFL43_03511 [Hoeflea p...   100   6e-20

>ref|YP_003777253.1| hypothetical protein Hsero_3867 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65345.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/80 (85%), Positives = 77/80 (96%)

Query: 1   MFLWTKPLGLKTFRQSREAAEATRVLAANQGLYNGFLAAGLFWSLATGDHAVQIFFVSCV 60
           MFLWTKPLGLK F QSR+AAE++RVLAANQGLYNGFLAAGLFWSL+TGD +VQ+FF+SCV
Sbjct: 30  MFLWTKPLGLKAFGQSRQAAESSRVLAANQGLYNGFLAAGLFWSLSTGDRSVQLFFLSCV 89

Query: 61  LVAGIYGGLTAKRSILYIQG 80
           LVAGIYGGLTAKR+ILY+QG
Sbjct: 90  LVAGIYGGLTAKRTILYVQG 109


>ref|ZP_06639968.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gb|EFE94870.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 117

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query: 1   MFLWTKPLGLKTFRQSREAAEATRVLAANQGLYNGFLAAGLFWSLATGDHAVQIFFVSCV 60
           MFLW  P+G++ F  +RE A ATR LAANQGLYNGFLAAGL WS        Q+FF+ CV
Sbjct: 24  MFLWQHPVGMRAFGTTREFASATRTLAANQGLYNGFLAAGLTWSWWLSQPVWQLFFLGCV 83

Query: 61  LVAGIYGGLTAKRSILYIQGLPALLALLALLAS 93
           L+AG+YGGLTA R IL++QGLPAL+A+LA+LA+
Sbjct: 84  LIAGLYGGLTANRKILWVQGLPALIAMLAVLAA 116


>ref|YP_003009302.1| hypothetical protein Pjdr2_0536 [Paenibacillus sp. JDR-2]
 gb|ACS99215.1| protein of unknown function DUF1304 [Paenibacillus sp. JDR-2]
          Length = 120

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/95 (64%), Positives = 72/95 (75%), Gaps = 4/95 (4%)

Query: 1   MFLWTKPLGLKTFRQSREAAEATRVLAANQGLYNGFLAAGLFWSL----ATGDHAVQIFF 56
           MFLWT P   K F   +  AEAT+ LAANQGLYNGFLAAGLFW L    A+  H +Q+FF
Sbjct: 24  MFLWTGPRARKAFGTDKAFAEATKSLAANQGLYNGFLAAGLFWGLVHPNASTGHQIQLFF 83

Query: 57  VSCVLVAGIYGGLTAKRSILYIQGLPALLALLALL 91
           + CVLVA +YGG TAKRSIL +QGLPAL+AL+A+L
Sbjct: 84  LICVLVAAVYGGFTAKRSILLVQGLPALIALIAVL 118


>ref|ZP_06066997.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gb|EEY92558.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 118

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 73/93 (78%), Gaps = 3/93 (3%)

Query: 1   MFLWTKPLGLKTFRQSREAAEATRVLAANQGLYNGFLAAGLFWSL-ATGDHAVQI--FFV 57
           MFLW KP GLK F  + E A+ T+VLA NQGLYNGFLAAGLFWSL A   +AV +  FF+
Sbjct: 22  MFLWDKPAGLKAFTNTPEKAQLTKVLAQNQGLYNGFLAAGLFWSLIAPETYAVALANFFL 81

Query: 58  SCVLVAGIYGGLTAKRSILYIQGLPALLALLAL 90
            CVL+AGIYGGLTA + I+YIQ +PAL+AL+A+
Sbjct: 82  GCVLIAGIYGGLTASKKIIYIQSVPALIALIAV 114


>ref|ZP_02167421.1| hypothetical protein HPDFL43_03511 [Hoeflea phototrophica DFL-43]
 gb|EDQ32579.1| hypothetical protein HPDFL43_03511 [Hoeflea phototrophica DFL-43]
          Length = 121

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 77/97 (79%), Gaps = 4/97 (4%)

Query: 1   MFLWTKPLGLKTFRQSREAAEATRVLAANQGLYNGFLAAGLFWSLATGDHAV----QIFF 56
           MFLWT P G++ F  SRE AE+T+V+AANQGLYNGFLAAGL W+L   D AV    ++FF
Sbjct: 24  MFLWTSPRGMRAFNLSREQAESTKVMAANQGLYNGFLAAGLIWALIHPDAAVAFQLKLFF 83

Query: 57  VSCVLVAGIYGGLTAKRSILYIQGLPALLALLALLAS 93
           ++CV+VAG+YGG TA R IL+IQ LPA LA++A++A+
Sbjct: 84  LACVVVAGLYGGATASRKILFIQALPAALAMIAVIAA 120