BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5018.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777252.1| threonine efflux protein [Herbaspirillum ser... 185 5e-45 ref|YP_002006687.1| neutral amino-acid efflux system [Cupriavidu... 125 4e-27 ref|YP_608719.1| amino acid transporter LysE [Pseudomonas entomo... 120 1e-25 ref|YP_001669030.1| lysine exporter protein LysE/YggA [Pseudomon... 118 6e-25 ref|YP_004197000.1| lysine exporter protein LysE/YggA [Geobacter... 117 7e-25 >ref|YP_003777252.1| threonine efflux protein [Herbaspirillum seropedicae SmR1] gb|ADJ65344.1| threonine efflux protein [Herbaspirillum seropedicae SmR1] Length = 207 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 147/207 (71%), Positives = 163/207 (78%), Gaps = 1/207 (0%) Query: 2 MLSSEFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGG 61 M SSEF LLA AHLLALASPGPDFLLL+RG+LRHGRGYGLAA+ GIA ANGLYIALAI G Sbjct: 1 MFSSEFLLLASAHLLALASPGPDFLLLVRGALRHGRGYGLAASAGIAAANGLYIALAIAG 60 Query: 62 FSLLQRAPLLLAAMQWLAACYLAWLGWVFWRAGRHPAVLPAAPVSAARVAPWAALGTGFL 121 FSLLQ +P LL AMQWLA+ YLAWLGW+F RA PA P + A A W +G GFL Sbjct: 61 FSLLQHSPALLVAMQWLASLYLAWLGWMFMRASLEPAPWPGSAGRQA-AAAWRGVGAGFL 119 Query: 122 SAALNPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRAL 181 SA LNPKNG+FYFGLFT++V A TG KLFYGVWMFGAVLAWDAGLV +AQ RV L Sbjct: 120 SALLNPKNGLFYFGLFTLMVEAHTGLPRKLFYGVWMFGAVLAWDAGLVCLMAQPRVAALL 179 Query: 182 TRVLPLIERGAGLLLMLAAAALVASRS 208 R LP++ER AGLLLM+AAAAL +RS Sbjct: 180 DRALPMVERVAGLLLMVAAAALAVTRS 206 >ref|YP_002006687.1| neutral amino-acid efflux system [Cupriavidus taiwanensis LMG 19424] emb|CAQ70626.1| neutral amino-acid efflux system [Cupriavidus taiwanensis LMG 19424] Length = 220 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 1/196 (0%) Query: 6 EFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGGFSLL 65 +F ++AGAH LAL SPGPDF L++R +L HG A LGIAL NG++I LA+ GF+ + Sbjct: 16 QFAMVAGAHALALLSPGPDFFLVVRSALLHGPRRASAVCLGIALGNGVFIGLALAGFAAM 75 Query: 66 QRAPLLLAAMQWLAACYLAWLGWVFWRA-GRHPAVLPAAPVSAARVAPWAALGTGFLSAA 124 + +P L AA+QW YLAWLGW A G A A A A + +GFLSA Sbjct: 76 RDSPQLFAALQWAGCAYLAWLGWRLLNASGELSMPAADAAARPAPAAWLAQMASGFLSAV 135 Query: 125 LNPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRALTRV 184 LNPKNG+FY LF+V+ +++T A+ +L YGVWMF VL WD + Y I + R Sbjct: 136 LNPKNGLFYASLFSVLAASRTPAAVQLAYGVWMFAVVLGWDLLVAYGIGHPAMAARFGRS 195 Query: 185 LPLIERGAGLLLMLAA 200 + +ER G++L L A Sbjct: 196 VRWVERLTGVVLWLLA 211 >ref|YP_608719.1| amino acid transporter LysE [Pseudomonas entomophila L48] emb|CAK15928.1| putative transporter, LysE family [Pseudomonas entomophila L48] Length = 206 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 116/200 (58%), Gaps = 3/200 (1%) Query: 6 EFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGGFSLL 65 +F L+A AH LAL SPGPDF L+ R S+ G A LGIALANGL+I +A G S+L Sbjct: 3 QFLLIATAHFLALLSPGPDFFLVARTSVNAGWRVASGACLGIALANGLFICMAFAGVSIL 62 Query: 66 QRAPLLLAAMQWLAACYLAWLGWVFWRAGRHPAVLPAAPVSAARVAPW-AALGTGFLSAA 124 +L A+Q YL ++G F R H ++ A A W A+LG GF S Sbjct: 63 HDGSVLFMALQLAGCGYLIYIGQRFLRHAGHGSLASAQSTGAGSPGGWFASLGMGFASGV 122 Query: 125 LNPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRALTRV 184 LNPKN +FY L +++ SA GA K YG+WMF VLAWD + I RV++ RV Sbjct: 123 LNPKNALFYASLASLVASA--GAWVKFGYGLWMFSLVLAWDLLVALAIGNPRVLQRFARV 180 Query: 185 LPLIERGAGLLLMLAAAALV 204 LP +ER +G++L+L A ++ Sbjct: 181 LPWLERASGMMLILLAGGVL 200 >ref|YP_001669030.1| lysine exporter protein LysE/YggA [Pseudomonas putida GB-1] gb|ABY98694.1| Lysine exporter protein (LYSE/YGGA) [Pseudomonas putida GB-1] Length = 204 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 108/190 (56%), Gaps = 3/190 (1%) Query: 6 EFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGGFSLL 65 +F ++A AH LAL SPGPDF L+ R S+ G A LGIALANG +IA+A G S+L Sbjct: 3 QFLIIALAHFLALLSPGPDFFLVARSSINSGWCTASGACLGIALANGAFIAMAFTGLSVL 62 Query: 66 QRAPLLLAAMQWLAACYLAWLGWVFWRAGRHPAVLPAAPVSAARVAPWAALGTGFLSAAL 125 Q LL +Q A YL ++G +F R ++ A A+ W +G GFLS L Sbjct: 63 QEGSLLFTTLQLAGASYLLYIGVLFLRHAGQTSLGTVAGSQRAQ-GWWRNVGMGFLSGVL 121 Query: 126 NPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRALTRVL 185 NPKN +FY L +++ SA G T Y VWMF VL WD + I QRV+R R L Sbjct: 122 NPKNALFYASLASMVASASVGWKTA--YAVWMFSIVLLWDLAVAVAIGNQRVLRRFARSL 179 Query: 186 PLIERGAGLL 195 P +ER +G++ Sbjct: 180 PWLERASGVM 189 >ref|YP_004197000.1| lysine exporter protein LysE/YggA [Geobacter sp. M18] gb|ADW11724.1| Lysine exporter protein (LYSE/YGGA) [Geobacter sp. M18] Length = 209 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 110/190 (57%), Gaps = 2/190 (1%) Query: 6 EFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGGFSLL 65 EF LA AH LAL SPGPDF L++ S+R G +A +GIA ANG+YI A+ GF+++ Sbjct: 7 EFGTLAIAHFLALISPGPDFFLIVGTSVREGALRAVAVCVGIAAANGVYILFALTGFAMI 66 Query: 66 QRAPLLLAAMQWLAACYLAWLGWVFWRAG-RHPAVLPAAPVSAARVAPWAALG-TGFLSA 123 + PL+ AA++ A YL +LG + ++ R + V+ W L GFLSA Sbjct: 67 KENPLIFAAIKTAGALYLLYLGMMLVKSSQRSICSVTEDEGEGKTVSAWGRLFVAGFLSA 126 Query: 124 ALNPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRALTR 183 LNPKN +FY LFTVIVS QT + YG+WMF AVL WD + + V R L Sbjct: 127 ILNPKNAIFYLSLFTVIVSRQTPQGIQALYGLWMFLAVLCWDWLVARTAGNEGVRRRLNH 186 Query: 184 VLPLIERGAG 193 LIE+G+G Sbjct: 187 YTHLIEKGSG 196