BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5017.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777251.1| AraC family transcription regulator protein ... 350 1e-94 ref|YP_001858065.1| AraC family transcriptional regulator [Burkh... 182 4e-44 ref|YP_572107.1| AraC family transcriptional regulator [Chromoha... 180 3e-43 ref|YP_002028053.1| AraC family transcriptional regulator [Steno... 177 2e-42 ref|YP_001631793.1| AraC family transcriptional regulator [Borde... 171 1e-40 >ref|YP_003777251.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65343.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 188/263 (71%), Positives = 209/263 (79%) Query: 6 HFWRPPALPFFEGRRATGSLSCYAPHTHDSFSIGVVDGGHSIFTLADRSERIFPGDVILV 65 HFWR PALPF EGRRATGSLSCYAPHTHDSFSIG+VD GHSIF LA+ S+ I PGDV+LV Sbjct: 17 HFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVVLV 76 Query: 66 RAGDVHSCNPADLQRWSYRMFHLDSSWLATLLAQTPATCGLLSGMPSQVVRSPEALQWLD 125 RAGDVH CNPADLQ WSYRMFH++ WL+TLLA+TPAT GL M SQV+RSP+A+Q LD Sbjct: 77 RAGDVHCCNPADLQCWSYRMFHIEHGWLSTLLAETPATRGLPERMRSQVLRSPQAVQLLD 136 Query: 126 RMTHALETGHPDLEREVIRCLQHVMRACADACSPAQASDAPEDDGLQRAHDFLLAHCRDR 185 RMT AL+ + EVI CLQ +M CA+AC+ A + GL RA+ L HCR Sbjct: 137 RMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHGLGRAYAHLQQHCRRS 196 Query: 186 VSLATLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGASTVHAALDTGF 245 VSL LAE+AG RYQLIRQFRRR+G+TPHALQLDMKIRQARTLLQQGAS AA DTGF Sbjct: 197 VSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAAYDTGF 256 Query: 246 ADQSHFHRAFKSRVAATPLQYRR 268 ADQSHFHRAFKSRVAATPLQY R Sbjct: 257 ADQSHFHRAFKSRVAATPLQYTR 279 >ref|YP_001858065.1| AraC family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC71019.1| transcriptional regulator, AraC family [Burkholderia phymatum STM815] Length = 271 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 143/264 (54%), Gaps = 2/264 (0%) Query: 7 FWRPPALPFFEGRRATGSLSCYAPHTHDSFSIGVVDGGHSIFTLADRSERIFPGDVILVR 66 +WR P LPF E R A GS +CY PHTHD+ SIG VD GHS + D R+ PG ++L+ Sbjct: 6 YWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGSLVLIP 65 Query: 67 AGDVHSCNPADLQRWSYRMFHLDSSWLATLLAQT-PATCGLLSGMPSQVVRSPEALQWLD 125 A VH+CNP WSY+M HLD +W + +L ++ A + PS + R +A Q Sbjct: 66 ATRVHACNPDTDSAWSYQMLHLDVAWASAVLRESGTANADDVLARPS-INRDRDAYQRYC 124 Query: 126 RMTHALETGHPDLEREVIRCLQHVMRACADACSPAQASDAPEDDGLQRAHDFLLAHCRDR 185 + L + E+E L R+ D L+R D L +R Sbjct: 125 ALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVPPVPRVAVDRLRRIMDLLHDAYDER 184 Query: 186 VSLATLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGASTVHAALDTGF 245 + + LA++AG SRY IR FR G+ PHA QLD++I AR LL+ G + A D GF Sbjct: 185 LPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAHDLGF 244 Query: 246 ADQSHFHRAFKSRVAATPLQYRRA 269 ADQ+HF RAFK RVA TP YRRA Sbjct: 245 ADQAHFQRAFKERVAMTPGAYRRA 268 >ref|YP_572107.1| AraC family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gb|ABE57408.1| transcriptional regulator, AraC family [Chromohalobacter salexigens DSM 3043] Length = 266 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 118/267 (44%), Positives = 149/267 (55%), Gaps = 10/267 (3%) Query: 6 HFWRPPALPFFEGRRATGSLSCYAPHTHDSFSIGVVDGGHSIFTLADRSERIFPGDVILV 65 FWR P LPF E RRAT S +CY PH+H + SIGVVD G S F R E + PG ++ V Sbjct: 3 QFWRDPTLPFVESRRATDSRACYRPHSHPTLSIGVVDRGQSQFQCQRRREWLTPGCLVSV 62 Query: 66 RAGDVHSCNPADLQRWSYRMFHLDSSWLATLLAQTPATCGLLSGMPSQV--VRSPEALQW 123 AG VH CNP Q WSY+M +L+ +W++ +L + A +PS V R Q Sbjct: 63 PAGVVHDCNPLPDQPWSYQMLYLEPAWVSEVLDEASAETDAAPTLPSTVFIARDVAPYQA 122 Query: 124 LDRMTHALETGHPDLERE--VIRCLQHVMRACADACSPAQASDAPEDDGLQRAHDFLLAH 181 R+ L + P ++E +I L + DA + + + DD LQR L Sbjct: 123 FCRLNALLFSSAPRADKEAGLIEFLGSRLWCHGDAMAVHWPNSSDLDD-LQRH----LLE 177 Query: 182 CRDR-VSLATLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGASTVHAA 240 C +R SL LA G SRYQ+IR FRR GLTPHA LD +I+QAR L QG A Sbjct: 178 CLERPPSLEVLARDHGLSRYQVIRLFRRETGLTPHAWLLDRRIQQARRRLCQGVELAELA 237 Query: 241 LDTGFADQSHFHRAFKSRVAATPLQYR 267 + GFADQ HF RAFK+RVAATP +YR Sbjct: 238 QELGFADQGHFQRAFKARVAATPGRYR 264 >ref|YP_002028053.1| AraC family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gb|ACF51370.1| transcriptional regulator, AraC family [Stenotrophomonas maltophilia R551-3] Length = 271 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 112/274 (40%), Positives = 149/274 (54%), Gaps = 9/274 (3%) Query: 1 MSPSLHFWRPPALPFFEGRRATGSLSCYAPHTHDSFSIGVVDGGHSIFTLADRSERIF-P 59 M + FWR P +PF E RRA S +C+ PH+HD+FSIG VD G+S+FT A R+ P Sbjct: 1 MRSATEFWRDPRMPFVESRRACDSRACHRPHSHDTFSIGAVDAGNSVFTGAAEGPRLLQP 60 Query: 60 GDVILVRAGDVHSCNPADLQRWSYRMFHLDSSWLATLLAQTPATCGL-LSGMPSQVVRSP 118 G+++ V AG VH+CNP Q WSY+M HLD+ W+A + A+ G P ++ Sbjct: 61 GNLVGVPAGRVHACNPLPGQVWSYQMLHLDARWMAEVRAEYDGLPGPDWQQEPIRISHHR 120 Query: 119 EALQWLDRMTHALETGHPDLEREVIRCLQHVMRACADACSPAQASDAPEDDGLQRAHDFL 178 Q ++ L + P +E D + PED LQ+ + Sbjct: 121 PRYQQYCQLNETLFSDDPVSVKEAALI---AFVGDLDEHDGVAVAGPPEDAALQQRVQPV 177 Query: 179 LAHCRDRV----SLATLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGA 234 + R R+ +L LA LAG SRYQLIR FRR GLTPHA Q+D +I++AR L +G Sbjct: 178 MDLLRQRLEHTPALQELASLAGMSRYQLIRAFRRATGLTPHAWQIDQRIQEARRRLCEGQ 237 Query: 235 STVHAALDTGFADQSHFHRAFKSRVAATPLQYRR 268 + A GFADQSHF R FK+ ATP QYRR Sbjct: 238 ALAVVAHALGFADQSHFQRVFKAHAGATPGQYRR 271 >ref|YP_001631793.1| AraC family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43525.1| transcriptional regulator, AraC family [Bordetella petrii] Length = 267 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 114/269 (42%), Positives = 143/269 (53%), Gaps = 7/269 (2%) Query: 3 PSLHFWRPPALPFFEGRRATGSLSCYAPHTHDSFSIGVVDGGHSIFTLADRSERIFPGDV 62 P FWR LP+ E RRA S +CY HTHD+ SIG VD G S+F + R+ PG + Sbjct: 2 PDTEFWRDARLPYAESRRAVHSRACYVSHTHDTVSIGAVDAGGSVFCSGGQRRRLRPGSL 61 Query: 63 ILVRAGDVHSCNPADLQRWSYRMFHLDSSWLATLLAQTPATCGLLSGMPSQ--VVRSPEA 120 ++V A H+CNP WSY+M HLD+ W A LL +T + GL P Q + +P A Sbjct: 62 VMVPAHCAHACNPDADAAWSYQMLHLDAGWTAELLRETAPSAGL----PEQACISAAPSA 117 Query: 121 LQWLDRMTHALETGHPDLEREVIRCLQHVMRACADACSPAQASDAPEDDGLQRAHDFLLA 180 ++ L + ++E L R+ P A+ LQ L Sbjct: 118 YHRFCQLNALLFSDAAPADKEAALVLYIGGRSWLGR-PPRTAAPRLPAARLQHILAVLRE 176 Query: 181 HCRDRVSLATLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGASTVHAA 240 + LA LA AG SRYQ IR R+ G+TPHA QLD++I QAR LL+ G S A Sbjct: 177 PGSQALPLADLAARAGMSRYQFIRACRQATGMTPHAYQLDLRIVQARRLLRAGHSLSRIA 236 Query: 241 LDTGFADQSHFHRAFKSRVAATPLQYRRA 269 D GFADQSHF RAFK RVAATP YRRA Sbjct: 237 QDLGFADQSHFQRAFKERVAATPGAYRRA 265