BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5014.p (574 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase [Herbaspiri... 1086 0.0 ref|YP_004754638.1| long-chain-fatty-acid--CoA ligase [Collimona... 925 0.0 ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinoba... 840 0.0 ref|YP_585289.1| Long-chain-fatty-acid--CoA ligase [Cupriavidus ... 838 0.0 ref|YP_297198.1| acyl-CoA synthetase [Ralstonia eutropha JMP134]... 837 0.0 >ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ65341.1| long-chain-fatty-acid-CoA ligase protein [Herbaspirillum seropedicae SmR1] Length = 566 Score = 1086 bits (2809), Expect = 0.0, Method: Composition-based stats. Identities = 530/566 (93%), Positives = 549/566 (96%) Query: 9 MERFWLASYPAGVPADIDPGRYGSLVQMIDEAFAQHADRNAYVCMGKYLRYRELDSLSRA 68 MERFWLASYPAGVPA+IDPGRYGSLVQMIDEAF QHADR AYVCMGKYL YRELDSLSRA Sbjct: 1 MERFWLASYPAGVPAEIDPGRYGSLVQMIDEAFVQHADRQAYVCMGKYLSYRELDSLSRA 60 Query: 69 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 128 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG Sbjct: 61 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 120 Query: 129 AEAIFVLENFACTLQKVVAHTQVKHIVVASMGELLGTLKGAIVNLVVRHVKKMVPSWSLP 188 AEAIFVLENFACTLQKVVAHT +KHIVVASMGELLG LKG +VNLVVRHVKK+VP+WSLP Sbjct: 121 AEAIFVLENFACTLQKVVAHTNIKHIVVASMGELLGALKGTLVNLVVRHVKKLVPAWSLP 180 Query: 189 NAISFSRALSQGEGKTLQKVSLTPDDVAFLQYTGGTTGVAKGAVLTHRNLIANVLQAEEW 248 NAI+FS+ALSQ GKTLQ V+LT DD+AFLQYTGGTTGVAKGAVLTHRNL+ANVLQAEEW Sbjct: 181 NAITFSQALSQARGKTLQPVTLTHDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEW 240 Query: 249 LTPALKSGKPIDQLVFVCALPLYHIFALTVCNLLGTREGALNLLIPNPRDIPGFVKELAK 308 LTPALK+GKPIDQLVFVCALPLYHIFALTVCN+LGTREGALNLLIPNPRDIPGFVKELAK Sbjct: 241 LTPALKAGKPIDQLVFVCALPLYHIFALTVCNMLGTREGALNLLIPNPRDIPGFVKELAK 300 Query: 309 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 368 YKVNTFPAVNTLYNALLNNADFA+LDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY Sbjct: 301 YKVNTFPAVNTLYNALLNNADFARLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 360 Query: 369 GLSETSPIASANPCTIDEYTGTIGLPLPSTEIAILDDDGHPVPLGQPGEIAIRGPQVMPG 428 GLSETSPIASANPCTIDEYTGTIGLPLPSTE AILDDDG PVPLGQPGEIAIRGPQVMPG Sbjct: 361 GLSETSPIASANPCTIDEYTGTIGLPLPSTEFAILDDDGQPVPLGQPGEIAIRGPQVMPG 420 Query: 429 YWQRPDETAKVMTPDGFFKTGDIGVMDAQGYTKIVDRKKDMILVSGFNVYPNEIEGVVAQ 488 YWQRPDETAKVMTPDGFFKTGDIGVMD +GYTKIVDRKKDMILVSGFNVYPNE+EGVVAQ Sbjct: 421 YWQRPDETAKVMTPDGFFKTGDIGVMDERGYTKIVDRKKDMILVSGFNVYPNEVEGVVAQ 480 Query: 489 HPAVLECACVGVPDEHTGEAVKLFVVRKDKSLTSEQLMAYCKEQFTGYKKPKYIEFRDEL 548 HP VLECACVGVPDEHTGEAVKLFVVRKDK+L++ QLM YCKEQFTGYKKPKYIEFRDEL Sbjct: 481 HPGVLECACVGVPDEHTGEAVKLFVVRKDKTLSAAQLMDYCKEQFTGYKKPKYIEFRDEL 540 Query: 549 PKTNVGKILRRELRDDPAKAPQKQAA 574 PKTNVGKILRRELRD+PAKA QKQAA Sbjct: 541 PKTNVGKILRRELRDEPAKAQQKQAA 566 >ref|YP_004754638.1| long-chain-fatty-acid--CoA ligase [Collimonas fungivorans Ter331] gb|AAT42425.1| acyl-CoA synthetase [Collimonas fungivorans Ter331] gb|AEK63815.1| Long-chain-fatty-acid--CoA ligase [Collimonas fungivorans Ter331] Length = 568 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 438/566 (77%), Positives = 497/566 (87%), Gaps = 2/566 (0%) Query: 9 MERFWLASYPAGVPADIDPGRYGSLVQMIDEAFAQHADRNAYVCMGKYLRYRELDSLSRA 68 +++FWL SYP GV +ID +Y SL Q+++EAF ++A RNAY CMGKYL Y E+D LSR Sbjct: 5 VDKFWLKSYPEGVAPEIDYSQYQSLAQLLEEAFQKYAPRNAYACMGKYLTYAEVDQLSRK 64 Query: 69 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 128 +G WLQG GL+KGARVAIMMPNVLQYP+AIAAILRAGY VVNVNPLYT RELEHQL DSG Sbjct: 65 VGAWLQGKGLEKGARVAIMMPNVLQYPVAIAAILRAGYIVVNVNPLYTPRELEHQLNDSG 124 Query: 129 AEAIFVLENFACTLQKVVAHTQVKHIVVASMGELLGTLKGAIVNLVVRHVKKMVPSWSLP 188 AEAIF+LENFA TLQ+V+A T+VKH+VVASMG+L+G +KG +VNLVVRHVKKMVPS+SLP Sbjct: 125 AEAIFILENFATTLQQVIARTKVKHVVVASMGDLMG-VKGLVVNLVVRHVKKMVPSFSLP 183 Query: 189 NAISFSRALSQGEGKTLQKVSLTPDDVAFLQYTGGTTGVAKGAVLTHRNLIANVLQAEEW 248 ++ F+ LSQG L+ V+LTPDD AFLQYTGGTTGV+KGA L+HRN++ANVLQAE W Sbjct: 184 GSVPFNSVLSQGASLQLKPVALTPDDTAFLQYTGGTTGVSKGATLSHRNVVANVLQAEAW 243 Query: 249 LTPALKSGKPIDQLVFVCALPLYHIFALTVCNLLGTREGALNLLIPNPRDIPGFVKELAK 308 L P L +G ++QLVFVCALPLYHIFALTVC +LG REGALNLL+PNPRDI G +KE++K Sbjct: 244 LAPGLNNGPKVEQLVFVCALPLYHIFALTVCGMLGMREGALNLLVPNPRDIAGLIKEMSK 303 Query: 309 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 368 Y++NTFPAVNTLYNALLN+ DFAKLDFSGYR CVGGGMAVQK+VADKWK++TGCPIIEGY Sbjct: 304 YQINTFPAVNTLYNALLNHPDFAKLDFSGYRVCVGGGMAVQKAVADKWKEVTGCPIIEGY 363 Query: 369 GLSETSPIASANPCTIDEYTGTIGLPLPSTEIAILDDDGHPVPLGQPGEIAIRGPQVMPG 428 GLSETSPIA ANPC I EY+GTIGLPLPSTEIAILDD G+PV LGQ GEIAIRGPQVM G Sbjct: 364 GLSETSPIACANPCDIKEYSGTIGLPLPSTEIAILDDAGNPVALGQAGEIAIRGPQVMRG 423 Query: 429 YWQRPDETAKVMTPDGFFKTGDIGVMDAQGYTKIVDRKKDMILVSGFNVYPNEIEGVVAQ 488 YW R DETAKVMT DGFFK+GDIG+MD +GYTKIVDRKKDMILVSGFNVYPNE+EGVV Q Sbjct: 424 YWNRDDETAKVMTADGFFKSGDIGIMDERGYTKIVDRKKDMILVSGFNVYPNEVEGVVVQ 483 Query: 489 HPAVLECACVGVPDEHTGEAVKLFVVRKDKSLTSEQLMAYCKEQFTGYKKPKYIEFRDEL 548 HP VLECACVGVPDEH GE VK+FVVRKD SLT+EQLMAYC+EQ TGYK+PKYIEFR +L Sbjct: 484 HPGVLECACVGVPDEHAGEVVKIFVVRKDPSLTAEQLMAYCREQLTGYKRPKYIEFRTDL 543 Query: 549 PKTNVGKILRRELRDDPAKAPQKQAA 574 PKTNVGKILRRELRD+ A QKQAA Sbjct: 544 PKTNVGKILRRELRDE-KPAEQKQAA 568 >ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] gb|ABR88609.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 404/560 (72%), Positives = 467/560 (83%) Query: 9 MERFWLASYPAGVPADIDPGRYGSLVQMIDEAFAQHADRNAYVCMGKYLRYRELDSLSRA 68 M++FWL SYP G+PA+IDP RYGSLV+++DE+F ++ADRNA VCM K L YRE+D LS Sbjct: 1 MDKFWLKSYPEGIPAEIDPARYGSLVELLDESFQKYADRNACVCMDKALTYREVDHLSTE 60 Query: 69 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 128 +G WLQ +GLQKGARVA+MMPNVLQYPIAIAA+LRAGY +VNVNPLY RELEHQL DSG Sbjct: 61 VGAWLQSIGLQKGARVALMMPNVLQYPIAIAAVLRAGYVIVNVNPLYKPRELEHQLTDSG 120 Query: 129 AEAIFVLENFACTLQKVVAHTQVKHIVVASMGELLGTLKGAIVNLVVRHVKKMVPSWSLP 188 AEAI +LENFA TL+KV+A TQVKH++VA+MG+L G LKG IVN VVRHVKKMVP++SLP Sbjct: 121 AEAIIILENFAATLEKVIASTQVKHVIVATMGDLFGGLKGGIVNFVVRHVKKMVPAYSLP 180 Query: 189 NAISFSRALSQGEGKTLQKVSLTPDDVAFLQYTGGTTGVAKGAVLTHRNLIANVLQAEEW 248 A+ F L Q G TLQ+ +L D+AFLQYTGGTTG AKGA+LTHRN+IANVLQ E W Sbjct: 181 QAVPFKEVLRQAAGMTLQRPALGHQDLAFLQYTGGTTGTAKGAMLTHRNIIANVLQNEAW 240 Query: 249 LTPALKSGKPIDQLVFVCALPLYHIFALTVCNLLGTREGALNLLIPNPRDIPGFVKELAK 308 ++P L + QL+FVCALPLYHIFALT C +LGT G +NLLIPNPRDIPGF+KEL K Sbjct: 241 ISPVLNTLPKDKQLIFVCALPLYHIFALTTCGMLGTHLGVMNLLIPNPRDIPGFIKELMK 300 Query: 309 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 368 YKV+ PAVNTLYN LLNN DFAK+DFS + C GGGMAVQK V DKW+++TGC I EGY Sbjct: 301 YKVHFLPAVNTLYNGLLNNPDFAKVDFSELKLCNGGGMAVQKVVNDKWREVTGCAICEGY 360 Query: 369 GLSETSPIASANPCTIDEYTGTIGLPLPSTEIAILDDDGHPVPLGQPGEIAIRGPQVMPG 428 GLSETSP A+ANP T +E+TGTIGLP+ STE+ I+D D + VP G GEIAIRGPQVM G Sbjct: 361 GLSETSPTATANPPTTNEFTGTIGLPVSSTELKIIDSDDNEVPHGSAGEIAIRGPQVMAG 420 Query: 429 YWQRPDETAKVMTPDGFFKTGDIGVMDAQGYTKIVDRKKDMILVSGFNVYPNEIEGVVAQ 488 YW P ETA+ MT DGFFKTGDIG+MD +G+TKIVDRKKDMILVSGFNVYP+EIEGVVA Sbjct: 421 YWNNPVETAQSMTADGFFKTGDIGIMDERGFTKIVDRKKDMILVSGFNVYPSEIEGVVAA 480 Query: 489 HPAVLECACVGVPDEHTGEAVKLFVVRKDKSLTSEQLMAYCKEQFTGYKKPKYIEFRDEL 548 HP VLECAC+GVPDEHTGEAVKLFVVR+D +LT +LMAYC+EQFTGYKKPK IEFR EL Sbjct: 481 HPGVLECACIGVPDEHTGEAVKLFVVRRDPALTEAELMAYCREQFTGYKKPKSIEFRTEL 540 Query: 549 PKTNVGKILRRELRDDPAKA 568 PK+NVGKILRRELRD+ A Sbjct: 541 PKSNVGKILRRELRDEKKPA 560 >ref|YP_585289.1| Long-chain-fatty-acid--CoA ligase [Cupriavidus metallidurans CH34] gb|ABF10020.1| acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase) [Cupriavidus metallidurans CH34] Length = 560 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 392/560 (70%), Positives = 463/560 (82%) Query: 9 MERFWLASYPAGVPADIDPGRYGSLVQMIDEAFAQHADRNAYVCMGKYLRYRELDSLSRA 68 ME+ WL +YPAGVPA+ID ++ SL Q+++E+F +ADR A++CM + Y ELD LS A Sbjct: 1 MEKLWLKNYPAGVPAEIDASQFRSLAQLLEESFRTYADRRAFICMDHAITYGELDQLSHA 60 Query: 69 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 128 WLQ GL+ GAR+AIMMPNVLQYP+ +AA+LRAGY VVNVNPLYT RELEHQLKDSG Sbjct: 61 FAAWLQSRGLRPGARIAIMMPNVLQYPVVLAAVLRAGYVVVNVNPLYTPRELEHQLKDSG 120 Query: 129 AEAIFVLENFACTLQKVVAHTQVKHIVVASMGELLGTLKGAIVNLVVRHVKKMVPSWSLP 188 AEAI +LENFA TLQ V++ T VKH+VVASMG+LLGT+KGAIVN VVR+VKKMVP+W LP Sbjct: 121 AEAIVILENFASTLQAVLSATPVKHVVVASMGDLLGTVKGAIVNFVVRNVKKMVPAWELP 180 Query: 189 NAISFSRALSQGEGKTLQKVSLTPDDVAFLQYTGGTTGVAKGAVLTHRNLIANVLQAEEW 248 + + F L++G TL+ V+ PDDVAFLQYTGGTTGV+KGA L HRN++ANVLQ+E W Sbjct: 181 HCVRFKDVLAEGRKMTLKPVNTGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQSEAW 240 Query: 249 LTPALKSGKPIDQLVFVCALPLYHIFALTVCNLLGTREGALNLLIPNPRDIPGFVKELAK 308 + PAL G PIDQ+V + ALPLYHIFALTVC LLG R G L++LIPNPRDIPGF+KEL K Sbjct: 241 MQPALAKGAPIDQVVTITALPLYHIFALTVCCLLGMRSGGLSILIPNPRDIPGFIKELQK 300 Query: 309 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 368 YK + FPAVNTLYNALLN+ DFAK+DFSG R GGGMAVQ++VA W TGCPIIEGY Sbjct: 301 YKFHMFPAVNTLYNALLNHPDFAKIDFSGLRVANGGGMAVQEAVAKNWLAKTGCPIIEGY 360 Query: 369 GLSETSPIASANPCTIDEYTGTIGLPLPSTEIAILDDDGHPVPLGQPGEIAIRGPQVMPG 428 GLSETSP A+ NP D ++GTIGLPLPST+++I DDDG+ +PLGQPGEI +RGPQVM G Sbjct: 361 GLSETSPSATCNPTDTDAFSGTIGLPLPSTDVSIRDDDGNELPLGQPGEICLRGPQVMAG 420 Query: 429 YWQRPDETAKVMTPDGFFKTGDIGVMDAQGYTKIVDRKKDMILVSGFNVYPNEIEGVVAQ 488 YW RPDETAKVMT DGFFKTGDIGVMD +GYTKIVDRKKDMILVSGFNVYPNE+EGVVA+ Sbjct: 421 YWNRPDETAKVMTADGFFKTGDIGVMDERGYTKIVDRKKDMILVSGFNVYPNEVEGVVAE 480 Query: 489 HPAVLECACVGVPDEHTGEAVKLFVVRKDKSLTSEQLMAYCKEQFTGYKKPKYIEFRDEL 548 P VLE A VGVPD+H+GE VKLFVV+KD +L+ ++A+CK++ TGYK+PKY+EFR EL Sbjct: 481 CPGVLEVAAVGVPDQHSGEVVKLFVVKKDPALSEADVIAFCKDRLTGYKRPKYVEFRTEL 540 Query: 549 PKTNVGKILRRELRDDPAKA 568 PKTNVGKILRRELRD A Sbjct: 541 PKTNVGKILRRELRDSRKAA 560 >ref|YP_297198.1| acyl-CoA synthetase [Ralstonia eutropha JMP134] gb|AAZ62354.1| AMP-dependent synthetase and ligase [Ralstonia eutropha JMP134] Length = 560 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 395/555 (71%), Positives = 457/555 (82%) Query: 9 MERFWLASYPAGVPADIDPGRYGSLVQMIDEAFAQHADRNAYVCMGKYLRYRELDSLSRA 68 M+RFWL YPAGVPA+ID ++ SL Q+++ +F +ADR A+VCM K + Y ELD +S Sbjct: 1 MDRFWLKHYPAGVPAEIDASQFRSLAQLLEHSFRTYADRRAFVCMDKAITYGELDRMSAH 60 Query: 69 LGGWLQGLGLQKGARVAIMMPNVLQYPIAIAAILRAGYTVVNVNPLYTARELEHQLKDSG 128 WLQ GL+ GARVAIMMPNVLQYP+ +AA+LRAG+ VVNVNPLYT RELEHQLKDSG Sbjct: 61 FAAWLQSRGLRPGARVAIMMPNVLQYPVVLAAVLRAGFVVVNVNPLYTPRELEHQLKDSG 120 Query: 129 AEAIFVLENFACTLQKVVAHTQVKHIVVASMGELLGTLKGAIVNLVVRHVKKMVPSWSLP 188 AEAI +LENFA TLQ+V+A T VKH+VVASMG+LLG LKGAIVN VVR+VKKMVP W LP Sbjct: 121 AEAIVILENFATTLQQVLARTPVKHVVVASMGDLLGGLKGAIVNFVVRNVKKMVPEWELP 180 Query: 189 NAISFSRALSQGEGKTLQKVSLTPDDVAFLQYTGGTTGVAKGAVLTHRNLIANVLQAEEW 248 N + F+ L++G TLQ + PDDVAFLQYTGGTTGV+KGAVL HRN++ANVLQ+E W Sbjct: 181 NCVRFNAVLAEGRKLTLQPATTGPDDVAFLQYTGGTTGVSKGAVLLHRNVVANVLQSEAW 240 Query: 249 LTPALKSGKPIDQLVFVCALPLYHIFALTVCNLLGTREGALNLLIPNPRDIPGFVKELAK 308 + PAL G PI+Q+V + ALPLYHIFALTVC LLG R G +++LIPNPRDIPGF+KEL K Sbjct: 241 MQPALNKGAPIEQVVTITALPLYHIFALTVCCLLGMRNGGMSVLIPNPRDIPGFIKELQK 300 Query: 309 YKVNTFPAVNTLYNALLNNADFAKLDFSGYRCCVGGGMAVQKSVADKWKKLTGCPIIEGY 368 YK + FPAVNTLYNALLNN + K+DFSG R GGGMAVQ++VA +W TGCPIIEGY Sbjct: 301 YKFHMFPAVNTLYNALLNNPEIGKVDFSGLRVANGGGMAVQEAVAKQWLAKTGCPIIEGY 360 Query: 369 GLSETSPIASANPCTIDEYTGTIGLPLPSTEIAILDDDGHPVPLGQPGEIAIRGPQVMPG 428 GLSETSP A+ NP + ++GTIGLPLPSTEIAI DDDG VPLGQPGEI IRGPQVM G Sbjct: 361 GLSETSPSATCNPTDSNAFSGTIGLPLPSTEIAIRDDDGRDVPLGQPGEICIRGPQVMAG 420 Query: 429 YWQRPDETAKVMTPDGFFKTGDIGVMDAQGYTKIVDRKKDMILVSGFNVYPNEIEGVVAQ 488 YW RPDETAKVMTPDGFFKTGDIGVMD +GYTKIVDRKKDMILVSGFNVYPNEIEGV A+ Sbjct: 421 YWNRPDETAKVMTPDGFFKTGDIGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEGVAAE 480 Query: 489 HPAVLECACVGVPDEHTGEAVKLFVVRKDKSLTSEQLMAYCKEQFTGYKKPKYIEFRDEL 548 P VLE A VGVPD H+GE VKL+VV+KD +LT ++ +CKE+ TGYK+PKY+EFR EL Sbjct: 481 CPGVLEVAAVGVPDTHSGEVVKLYVVKKDPALTEADVIEFCKERLTGYKRPKYVEFRTEL 540 Query: 549 PKTNVGKILRRELRD 563 PKTNVGKILRRELRD Sbjct: 541 PKTNVGKILRRELRD 555