BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5013.p         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004750741.1| Rhs element Vgr protein [Collimonas fungivor...    68   6e-10
ref|YP_004754924.1| Rhs element Vgr protein [Collimonas fungivor...    67   9e-10
ref|YP_004751197.1| Rhs element Vgr protein [Collimonas fungivor...    65   2e-09
ref|YP_004750686.1| Rhs element Vgr protein [Collimonas fungivor...    63   1e-08
ref|ZP_06844638.1| Rhs element Vgr protein [Burkholderia sp. Ch1...    59   3e-07

>ref|YP_004750741.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
 gb|AEK59918.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
          Length = 883

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 1  MSKTLRGLEQLLSDYQHARILRLTFPHNDAPLSELLVNKLDASEGLSRDFALNRWRRTDN 60
          MS  L+ L+ L+S  Q  RILRL+FPH+D P ++LLVNKLDA E LSRDF       +D+
Sbjct: 5  MSNILQSLQSLISGRQTNRILRLSFPHDDGPSAQLLVNKLDAVESLSRDFEFTVELLSDD 64

Query: 61 A 61
          A
Sbjct: 65 A 65


>ref|YP_004754924.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
 gb|AEK64101.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
          Length = 818

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 1  MSKTLRGLEQLLSDYQHARILRLTFPHNDAPLSELLVNKLDASEGLSRDFALNRWRRTDN 60
          MS  L+ L+ L+S  Q  RILRL+FPH+D P ++LLVNKLDA E LSRDF       +D+
Sbjct: 1  MSNILQSLQSLISGRQTNRILRLSFPHDDGPSAQLLVNKLDAVESLSRDFEFTVELLSDD 60

Query: 61 A 61
          A
Sbjct: 61 A 61


>ref|YP_004751197.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
 gb|AEK60374.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
          Length = 871

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 36/50 (72%)

Query: 1  MSKTLRGLEQLLSDYQHARILRLTFPHNDAPLSELLVNKLDASEGLSRDF 50
          MS  L+ +  L+   QH RILRL+FPH D P ++LLVNKLDA E LSRDF
Sbjct: 1  MSSLLQSIAALIQGRQHNRILRLSFPHGDGPQAQLLVNKLDAVESLSRDF 50


>ref|YP_004750686.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
 gb|AEK59863.1| Rhs element Vgr protein [Collimonas fungivorans Ter331]
          Length = 905

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 16 QHARILRLTFPHNDAPLSELLVNKLDASEGLSRDFALNRWRRTDNA 61
          QH RILRL+FPH+D P ++LLVNKLDA E LSRDFA      +D+A
Sbjct: 16 QHDRILRLSFPHDDGPQAQLLVNKLDAVESLSRDFAFTVELLSDDA 61


>ref|ZP_06844638.1| Rhs element Vgr protein [Burkholderia sp. Ch1-1]
 gb|EFG67673.1| Rhs element Vgr protein [Burkholderia sp. Ch1-1]
          Length = 823

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 8  LEQLLSDYQHARILRLTFPHNDAPLSELLVNKLDASEGLSRDFALNRWRRTDNA 61
           + + +D Q +R+LRLTFPH+DAP   LL N+L  +E LSRDF       +DNA
Sbjct: 9  FQNVFADRQQSRLLRLTFPHDDAPYPTLLANRLTGTESLSRDFEFKVEILSDNA 62