BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5012.p         (277 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03454632.1| conserved hypothetical protein [Burkholderia ...   101   1e-19
ref|YP_003366352.1| hypothetical protein ROD_28271 [Citrobacter ...    96   4e-18
ref|YP_348062.1| RHS protein [Pseudomonas fluorescens Pf0-1] >gi...    84   3e-14
ref|ZP_08531352.1| RHS protein [Agrobacterium sp. ATCC 31749] >g...    71   2e-10
ref|YP_002549999.1| hypothetical protein Avi_2760 [Agrobacterium...    68   2e-09

>ref|ZP_03454632.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gb|EEC34058.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
          Length = 461

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/88 (69%), Positives = 72/88 (81%)

Query: 25  ANAVLKPETVAEKTFWQRSSPWVHGVLGVASFVPGLSVITGAIDAAIYTAEGDYVEAGLA 84
           +N  +KPET  E+ +W  +SPWVHGVLGVASFVPGLSV++GA+DA IY AEG+ VEAGL+
Sbjct: 143 SNPPVKPETPKEEGWWGAASPWVHGVLGVASFVPGLSVVSGAVDAGIYAAEGNMVEAGLS 202

Query: 85  AASMIPGGKVVTTAGKVAKRAVSAASAA 112
           AASMIPG KVVTTAGK+AK AV  A  A
Sbjct: 203 AASMIPGVKVVTTAGKLAKGAVGLAKGA 230


>ref|YP_003366352.1| hypothetical protein ROD_28271 [Citrobacter rodentium ICC168]
 emb|CBG89568.1| hypothetical protein ROD_28271 [Citrobacter rodentium ICC168]
          Length = 309

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 67/105 (63%), Gaps = 6/105 (5%)

Query: 165 KEAVETAKAAKEANAAKATQAGSGGNRGGKDTTVKKKGRGPCDHLRQGNGKGPYRGGAHG 224
           K A  + K A   N  K T  GSGG   GK    +K   GPCDHLR+G GKG YRGGAH 
Sbjct: 145 KAAGNSVKNAGTGN--KKTVTGSGGKARGK----RKSEPGPCDHLRKGAGKGKYRGGAHE 198

Query: 225 KTSKPTKDGKDSHHMPADDVSPLKRNEGPAIQMDPEDHKDTSSNG 269
           +T +P +DG DSHHMPA   SPL  N+GPAIQM P DH  TSSNG
Sbjct: 199 ETKEPKRDGLDSHHMPAKAASPLTPNQGPAIQMKPTDHGKTSSNG 243


>ref|YP_348062.1| RHS protein [Pseudomonas fluorescens Pf0-1]
 gb|ABA74073.1| putative Rhs-family protein [Pseudomonas fluorescens Pf0-1]
          Length = 1573

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 202  GRGPCDHLRQGN--GKGPYRGGAHGKTSKPTKDGKDSHHMPADDVSPLKRNEGPAIQMDP 259
             R PC  L++GN  G GP+RGG++G T   T  G +SHHMPAD  SP+KR++GPAIQM+P
Sbjct: 1442 ARCPCADLKKGNPEGTGPFRGGSYGGT---TASGIESHHMPADSTSPIKRSQGPAIQMEP 1498

Query: 260  EDHKDTSSNGSNGLQGE 276
             DH  T S+G  G  G+
Sbjct: 1499 YDHSQTMSHGHQGNPGK 1515


>ref|ZP_08531352.1| RHS protein [Agrobacterium sp. ATCC 31749]
 gb|EGL61937.1| RHS protein [Agrobacterium sp. ATCC 31749]
          Length = 220

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 177 ANAAKATQAGSGGNRGGKDTTVKKKGRGPCDHLRQGNGKGPYRGGAHG---KTSKPTKDG 233
           +NA    QA        +  T  +  + PC +L  G     YRGGAHG    T +   DG
Sbjct: 60  SNAQTEAQAQDQAVPATRTVTCARCAQNPCAYLACGVPGSTYRGGAHGCMTDTPETLGDG 119

Query: 234 KDSHHMPADDVSPLKRNEGPAIQMDPEDHKDTSSNG 269
            DSHHMPAD  SPL R  GPAIQMDP DH+ T+S G
Sbjct: 120 LDSHHMPADSKSPLPRPVGPAIQMDPVDHRLTASYG 155


>ref|YP_002549999.1| hypothetical protein Avi_2760 [Agrobacterium vitis S4]
 gb|ACM36990.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 540

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 142 VSAARVAKGAREAEEA-AKAARATKEAVETAKAAKEANAAKATQAGSGGNRGGKDTTVKK 200
           VS  +  K  +E EE   +A +  K A E     K  +AA+A +    G+ GG+ T  +K
Sbjct: 345 VSPGKKIKLLKEVEEGLEEAGKIGKIARERQHVEKAEHAAEAVE----GSGGGRVTNKRK 400

Query: 201 KGRGPCDHLRQGNGKGP--YRGGAHGKTSKPTKDGKDSHHMPADDVSPLKRNEGPAIQMD 258
             R PC HL +G+  GP  +RGG++G T        +S+HMP   VSPL     P++QMD
Sbjct: 401 PTRNPCLHLAKGDKDGPGEFRGGSYGGTKGVGDKEMESNHMPPKSVSPLGELPSPSMQMD 460

Query: 259 PEDHKDTSSNGSNG 272
             DH+D  S GS+ 
Sbjct: 461 KADHRDALSTGSSA 474