BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5011.p         (196 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_778396.1| hypothetical protein Bamb_6518 [Burkholderia am...   164   5e-39
ref|NP_792272.1| hypothetical protein PSPTO_2458 [Pseudomonas sy...   139   3e-31
gb|EGH74493.1| hypothetical protein PSYAR_28476 [Pseudomonas syr...   138   4e-31
ref|YP_001760713.1| GAD-like domain-containing protein [Shewanel...   130   1e-28
ref|YP_004793110.1| GAD-like domain-containing protein [Burkhold...   129   2e-28

>ref|YP_778396.1| hypothetical protein Bamb_6518 [Burkholderia ambifaria AMMD]
 gb|ABI92062.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 214

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 107/152 (70%), Gaps = 1/152 (0%)

Query: 29  NPDDYAGLVDDWLADTELEGVDVFHVIARSAFGKLYVCGEKTGSSVSMDCVINSVSAFEN 88
           NPD+Y  ++D WL DT  E VD +HVIAR+AFGKLY  GEKTG S+++ C  +S+ A E 
Sbjct: 59  NPDEYEDVLDMWLEDTIFEEVDSYHVIARTAFGKLYAWGEKTGPSLTVSCPTHSLIALEK 118

Query: 89  ELKPKSKEDLDFSIRSLFACLKPDECDVEDEDGQPLFERARSKLGPLEPHEIYGFQPAIV 148
           +LK + K + DF +++ F    P ECD +DE  QPLF+RA  KLGPLEP E+YGF+PA++
Sbjct: 119 DLKGQLK-NPDFRVQTFFGAKTPSECDFKDEAKQPLFKRAAGKLGPLEPDEMYGFEPALI 177

Query: 149 LGGSFLLENLVKVKANVHLTLLRMFGEPTFPF 180
           +GG   L++L KVK +VHLT+LR    P  PF
Sbjct: 178 VGGHMNLDHLKKVKLDVHLTILRQLAPPKIPF 209


>ref|NP_792272.1| hypothetical protein PSPTO_2458 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gb|AAO55967.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 204

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/142 (50%), Positives = 96/142 (67%), Gaps = 1/142 (0%)

Query: 29  NPDDYAGLVDDWLADTELEGVDVFHVIARSAFGKLYVCGEKTGSSVSMDCVINSVSAFEN 88
           NPD+Y  L+D WL+ T+  G+D +HVIARSAFG LY  GEK G  + + C  + + +  +
Sbjct: 59  NPDEYKHLLDMWLSGTKFSGIDNYHVIARSAFGDLYAWGEKYGRKIIVSCPGDYIVSLAD 118

Query: 89  ELKPKSKEDLDFSIRSLFACLKPDECDVEDEDGQPLFERARSKLGPLEPHEIYGFQPAIV 148
           E + +  +D D +I+S FA    ++ D+ED DG PLFERA  KLG L   E+YGFQPA+V
Sbjct: 119 EAEIRC-DDPDLAIQSFFAMSDREDFDMEDHDGIPLFERAVQKLGCLNEDEMYGFQPALV 177

Query: 149 LGGSFLLENLVKVKANVHLTLL 170
           LGGS  L+NLVK+   VHLT+L
Sbjct: 178 LGGSITLQNLVKLDLEVHLTIL 199


>gb|EGH74493.1| hypothetical protein PSYAR_28476 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 204

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 1/142 (0%)

Query: 29  NPDDYAGLVDDWLADTELEGVDVFHVIARSAFGKLYVCGEKTGSSVSMDCVINSVSAFEN 88
           NPDDY  L+D WL+ T+   +D +HVIARSAFG LY  GEK G  + + C  + + +  +
Sbjct: 59  NPDDYKHLLDMWLSGTKFSSIDNYHVIARSAFGDLYAWGEKYGRKIVVSCPGDYIVSLAD 118

Query: 89  ELKPKSKEDLDFSIRSLFACLKPDECDVEDEDGQPLFERARSKLGPLEPHEIYGFQPAIV 148
           E      +D D +I+S FA   P++ D+ED DG PLFERA  KLG L   E+YGFQPA+V
Sbjct: 119 EADIPC-DDPDQAIQSFFAMSDPEDYDMEDSDGVPLFERAVQKLGRLNDDEMYGFQPALV 177

Query: 149 LGGSFLLENLVKVKANVHLTLL 170
           LGGS  L+NLVK+   VHLT+L
Sbjct: 178 LGGSVTLQNLVKLDLEVHLTIL 199


>ref|YP_001760713.1| GAD-like domain-containing protein [Shewanella woodyi ATCC 51908]
 gb|ACA86618.1| GAD-like domain protein [Shewanella woodyi ATCC 51908]
          Length = 221

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/149 (48%), Positives = 93/149 (62%), Gaps = 1/149 (0%)

Query: 29  NPDDYAGLVDDWLADTELEGVDVFHVIARSAFGKLYVCGEKTGSSVSMDCVINSVSAFEN 88
           NP DYA ++  WL+DT  E  D ++VIARSAFG+L V GEKTG S+ ++     +   +N
Sbjct: 60  NPADYADILMTWLSDTPFENADNYYVIARSAFGELIVWGEKTGQSIDINVNFGMIFPTDN 119

Query: 89  ELKPKSKEDLDFSIRSLFACLKPDECDVEDEDGQPLFERARSKLGPLEPHEIYGFQPAIV 148
             K K + + + SI   FA +  D  D +D D  PLFERA +KLGPLE  E+YGF PA+ 
Sbjct: 120 TEKLKKRGE-ERSIELFFASMSKDSLDKKDLDENPLFERAMAKLGPLEADEMYGFVPALA 178

Query: 149 LGGSFLLENLVKVKANVHLTLLRMFGEPT 177
           +GG+  LENL KVK   HLT L   GE T
Sbjct: 179 IGGAPKLENLQKVKVLEHLTFLADLGEKT 207


>ref|YP_004793110.1| GAD-like domain-containing protein [Burkholderia sp. JV3]
 gb|AEM51884.1| GAD-like domain protein [Burkholderia sp. JV3]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 91/151 (60%)

Query: 29  NPDDYAGLVDDWLADTELEGVDVFHVIARSAFGKLYVCGEKTGSSVSMDCVINSVSAFEN 88
           NP+DY GL+  WLA T    +D +HV ARS FG+LY+CGE +G  VS+D + + V A +N
Sbjct: 60  NPEDYEGLMHSWLAGTPFSLIDTYHVFARSGFGRLYLCGEASGVGVSIDPIRSEVFALQN 119

Query: 89  ELKPKSKEDLDFSIRSLFACLKPDECDVEDEDGQPLFERARSKLGPLEPHEIYGFQPAIV 148
            L+PKS    +  I++ FAC + ++ D+ D   +  F+R  S  G L   E+YGF+PA+V
Sbjct: 120 CLRPKSLARQEGGIKAFFACAELEDFDLMDGVEELPFDRVVSTCGHLMADEMYGFEPALV 179

Query: 149 LGGSFLLENLVKVKANVHLTLLRMFGEPTFP 179
            GG   + NL + K   HL +LR    P FP
Sbjct: 180 CGGEVAIGNLRRFKLQPHLHMLRELAAPAFP 210