BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5006.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777245.1| transcription regulator protein [Herbaspiril... 608 e-172 ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalo... 505 e-141 ref|YP_004754630.1| LysR family transcriptional regulator [Colli... 490 e-136 ref|YP_294681.1| LysR family transcriptional regulator [Ralstoni... 377 e-102 ref|YP_004684338.1| LysR family transcriptional regulator [Cupri... 374 e-101 >ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65337.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 312/335 (93%), Positives = 322/335 (96%), Gaps = 5/335 (1%) Query: 1 METKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME+KWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFG+I Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETLRPYSRCDRN 180 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLD+SRYDMLTMGTETLRPYSRCDRN Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLMKHYETDMSESLKMMAL 240 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHL KHYETDMSESLKMMAL Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 241 EGHGVAFLPESSVLREVRNRQLARTDGPTGEWEVEMEIRLYRERPTAQRTGKALVARLWE 300 EGHGVAFLPESSV+REVRNRQLARTD P+GEWEVEMEIRLYRERPTAQR GKALVARLWE Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 Query: 301 YLVELDAQRQEKAERGERGERSKGAGGKSPRTAEK 335 YLVELDAQRQE G +G ++ +GGK+ R AEK Sbjct: 301 YLVELDAQRQE----GGKGS-ARTSGGKAGRAAEK 330 >ref|ZP_08274374.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32152.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 324 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 244/315 (77%), Positives = 276/315 (87%) Query: 1 METKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 METKWLEDF+SLAETRSFSRSA+LRHVTQPAFSRRIQSLEAWLG DLIDRTSYPTRLT A Sbjct: 1 METKWLEDFLSLAETRSFSRSAQLRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTPA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GE+FYEQA+ MLGQINN RALLRGKRP AQTT+DFAVPHTLSLTYMPKW++AL++ FG I Sbjct: 61 GEIFYEQAMEMLGQINNARALLRGKRPAAQTTVDFAVPHTLSLTYMPKWMTALDADFGPI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETLRPYSRCDRN 180 NTRL+ALNVHDAVM++VEGGCDLLLCYHHPRQPVQLD++RYDML +G E+L PY+RCDR Sbjct: 121 NTRLMALNVHDAVMSMVEGGCDLLLCYHHPRQPVQLDSARYDMLVLGAESLCPYARCDRT 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLMKHYETDMSESLKMMAL 240 G PD+V PGSA AP+PFLSYT+NAYLGRMVEL++AD K PLHL K YETDM+E LKMMAL Sbjct: 181 GVPDFVLPGSALAPLPFLSYTTNAYLGRMVELILADAKHPLHLQKCYETDMAEGLKMMAL 240 Query: 241 EGHGVAFLPESSVLREVRNRQLARTDGPTGEWEVEMEIRLYRERPTAQRTGKALVARLWE 300 EG GV FLPESSV RE+R +QLAR DG EW+VEMEIRLYRE+P+ R GK LV RLW+ Sbjct: 241 EGRGVVFLPESSVTRELRQKQLARADGGQPEWQVEMEIRLYREKPSVGRPGKPLVGRLWD 300 Query: 301 YLVELDAQRQEKAER 315 YLV+ + Q+ R Sbjct: 301 YLVQQQMKTQKPPGR 315 >ref|YP_004754630.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AAT42433.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63807.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 356 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 241/316 (76%), Positives = 274/316 (86%), Gaps = 7/316 (2%) Query: 1 METKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME+KWLEDF+SLAET SFSRSAELRHVTQPAFSRRIQSLEAWLG DLIDRTSYPTRLTAA Sbjct: 24 MESKWLEDFISLAETHSFSRSAELRHVTQPAFSRRIQSLEAWLGADLIDRTSYPTRLTAA 83 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GEVFYEQA+ MLGQINN RAL+RGKRPTA +T+DFAVPHTLSLTY+P+W+ LE GFG + Sbjct: 84 GEVFYEQALEMLGQINNARALMRGKRPTALSTVDFAVPHTLSLTYVPRWIRLLEDGFGPL 143 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETLRPYSRCDRN 180 NTRL+ALNVHDAVM +V+GGCDLLLCYHHPRQPVQLD RYD++T+G+E LR Y+ C++ Sbjct: 144 NTRLLALNVHDAVMAMVDGGCDLLLCYHHPRQPVQLDTGRYDLITLGSEVLRAYAHCNKA 203 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLMKHYETDMSESLKMMAL 240 G PDYVFPGSA AP+PFLSYTSNAYLGRMVEL++AD K+PL+L K YETDM+E LKMMAL Sbjct: 204 GVPDYVFPGSAGAPLPFLSYTSNAYLGRMVELILADAKKPLYLEKRYETDMAEGLKMMAL 263 Query: 241 EGHGVAFLPESSVLREVRNRQLART---DGPTGEWEVEMEIRLYRERPTAQRTGKALVAR 297 EGHGVAFLPES+V REV+ +QLAR D EWE MEIRLYRERPT QR GK +VAR Sbjct: 264 EGHGVAFLPESAVTREVKLKQLARVDRIDDSAPEWEATMEIRLYRERPTVQRPGKPVVAR 323 Query: 298 LWEYLVELDAQRQEKA 313 LW YL+ Q+QE+A Sbjct: 324 LWAYLL----QQQEQA 335 >ref|YP_294681.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ59837.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 315 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 188/286 (65%), Positives = 227/286 (79%), Gaps = 1/286 (0%) Query: 1 METKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME KWLEDFVSLAET SFSRSAELRHVTQPAFSRRIQSLEAW+GT+LIDR+SYPT LTAA Sbjct: 1 MEIKWLEDFVSLAETHSFSRSAELRHVTQPAFSRRIQSLEAWVGTELIDRSSYPTSLTAA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G+VFYEQA+AML Q++ TRAL+RG+R + ++FAVPHTLSLT+ P+WL LE G++ Sbjct: 61 GKVFYEQALAMLAQVSETRALMRGQRSSNAQVLEFAVPHTLSLTFFPEWLKTLERKVGTL 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETLRPYSRCDRN 180 RL ALNVHDAV+ +VEGGCDL++ YHH RQ +QLD +RYDML +G E L PYS D Sbjct: 121 PCRLRALNVHDAVLLLVEGGCDLVMVYHHARQAIQLDPARYDMLVLGIERLSPYSVPDST 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLMKHYETDMSESLKMMAL 240 GKP Y PG+ K PVPFLSYT NA+LGRMV++++ADT L L K YETDM+E+LK+MAL Sbjct: 181 GKPLYRLPGTDKKPVPFLSYTPNAFLGRMVDMLLADTSEELKLDKCYETDMAEALKVMAL 240 Query: 241 EGHGVAFLPESSVLREVRNRQLARTDGPTG-EWEVEMEIRLYRERP 285 GHG+AFLPES+V +V +L R + G ++MEIRLYRERP Sbjct: 241 SGHGMAFLPESAVRDDVAQGRLVRAESARGLPLSIDMEIRLYRERP 286 >ref|YP_004684338.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI75857.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 327 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 194/311 (62%), Positives = 235/311 (75%), Gaps = 9/311 (2%) Query: 1 METKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME KWLEDFVSLAET SFSRSAELRHVTQPAFSRRIQSLEAW+GT+LIDR+SYPT LT A Sbjct: 1 MEIKWLEDFVSLAETHSFSRSAELRHVTQPAFSRRIQSLEAWVGTELIDRSSYPTSLTPA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G+VFYEQA+AML Q++ TRAL+RG+R ++FAVPHTLSLT+ P+WL ALE G++ Sbjct: 61 GKVFYEQALAMLAQVSETRALMRGQRSANAQVLEFAVPHTLSLTFFPEWLKALERRIGTL 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETLRPYSRCDRN 180 RL ALNVHDAV+ +VEGGCDL++ YHH RQ +QLD +RYDML +GTE L PYS D Sbjct: 121 PCRLRALNVHDAVLMLVEGGCDLVMVYHHARQAIQLDPARYDMLVLGTERLSPYSVPDAA 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLMKHYETDMSESLKMMAL 240 GKP + PG+ K PVPFLSYT NA+LGRMV+L++ADT L L K YETDM+E+LK+MAL Sbjct: 181 GKPQFRLPGTDKKPVPFLSYTPNAFLGRMVDLLLADTSEALKLDKCYETDMAEALKVMAL 240 Query: 241 EGHGVAFLPESSVLREVRNRQLARTDGPTG-EWEVEMEIRLYRERP--------TAQRTG 291 GHG+AFLPES+V +V +L R + G ++MEIRLYRERP R Sbjct: 241 AGHGMAFLPESAVREDVAAGRLVRAESARGLPLSIDMEIRLYRERPGENGNERRAGARRK 300 Query: 292 KALVARLWEYL 302 + LV ++W L Sbjct: 301 RQLVDQVWSTL 311