BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5005.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777244.1| glutamate dehydrogenase [Herbaspirillum sero... 851 0.0 ref|YP_004754629.1| NAD-specific glutamate dehydrogenase [Collim... 768 0.0 ref|YP_001351968.1| glutamate dehydrogenase (NAD(P)+) [Janthinob... 722 0.0 ref|YP_582553.1| glutamate dehydrogenase [Cupriavidus metallidur... 686 0.0 ref|YP_004684339.1| glutamate dehydrogenase GdhA [Cupriavidus ne... 685 0.0 >ref|YP_003777244.1| glutamate dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65336.1| glutamate dehydrogenase (NAD(P)+) protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 421/430 (97%), Positives = 427/430 (99%) Query: 70 MSNVPNHEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRILVVDVPIER 129 MSNVPNHEVPSYLVPHGIGPWGVYLEQIDRVTP+LGSLARWVETLKRPKR+LVVDVPIER Sbjct: 1 MSNVPNHEVPSYLVPHGIGPWGVYLEQIDRVTPYLGSLARWVETLKRPKRMLVVDVPIER 60 Query: 130 DDGTIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKG 189 DDGTIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKG Sbjct: 61 DDGTIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKG 120 Query: 190 GIRVDPKTLSRGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGS 249 GIRVDPKTLSRGELQR+TRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGS Sbjct: 121 GIRVDPKTLSRGELQRVTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGS 180 Query: 250 TSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAKVAVQGFGNVGGIAA 309 TSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRG+DIKDAKVAVQGFGNVGGIAA Sbjct: 181 TSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGLDIKDAKVAVQGFGNVGGIAA 240 Query: 310 RLFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAKHGSVKGFEGADEITDRAQFWSVD 369 RLFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAK+GSVKGF GADEITDRAQFWSVD Sbjct: 241 RLFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAKNGSVKGFAGADEITDRAQFWSVD 300 Query: 370 CDILVPAALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGV 429 CDILVPAALEQQITEANAN IKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGV Sbjct: 301 CDILVPAALEQQITEANANQIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGV 360 Query: 430 TVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVL 489 TVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLA+EK VSLRTAAFIVACTRVL Sbjct: 361 TVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLADEKKVSLRTAAFIVACTRVL 420 Query: 490 QAREMRGLYP 499 QAREMRGLYP Sbjct: 421 QAREMRGLYP 430 >ref|YP_004754629.1| NAD-specific glutamate dehydrogenase [Collimonas fungivorans Ter331] gb|AAT42434.1| glutamate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK63806.1| NAD-specific glutamate dehydrogenase [Collimonas fungivorans Ter331] Length = 428 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 375/424 (88%), Positives = 401/424 (94%) Query: 76 HEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRILVVDVPIERDDGTIA 135 HEVPSYL HGIGPWG YLEQIDRVTP+LG+LARWVET+KRPKR+L+VDVPIERDDGTIA Sbjct: 5 HEVPSYLTQHGIGPWGDYLEQIDRVTPYLGNLARWVETMKRPKRMLIVDVPIERDDGTIA 64 Query: 136 HFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVDP 195 HFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMT+KNAAVNVPYGGAKGGIRVDP Sbjct: 65 HFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTVKNAAVNVPYGGAKGGIRVDP 124 Query: 196 KTLSRGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGSTSSGVV 255 KTLS+GELQRMTRRYTSEIGIIIGPNKDIPAPDVNT+ QIMAWMMDTYSMNQGST+SGVV Sbjct: 125 KTLSQGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTNEQIMAWMMDTYSMNQGSTASGVV 184 Query: 256 TGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAKVAVQGFGNVGGIAARLFAEA 315 TGKPISLGGSLGR EATGRGVFVVGCEAA KRG+DI AK+AVQGFGNVGGIAARLF+EA Sbjct: 185 TGKPISLGGSLGRREATGRGVFVVGCEAAVKRGLDIHGAKIAVQGFGNVGGIAARLFSEA 244 Query: 316 GSKVVAVQDHVTTVFNAGGLDVPALQAYVAKHGSVKGFEGADEITDRAQFWSVDCDILVP 375 G+KVVAVQDH++TV + GLDV ALQA+V + GSV GF+G +EI+DRAQFW+VDCDILVP Sbjct: 245 GAKVVAVQDHISTVVRSSGLDVAALQAHVNETGSVAGFKGGEEISDRAQFWAVDCDILVP 304 Query: 376 AALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGVTVSYFE 435 AALEQQIT NA I+AKIILEGANGPT+PAADDIL +KGVL+VPDVIANAGGVTVSYFE Sbjct: 305 AALEQQITVENAPTIRAKIILEGANGPTSPAADDILHEKGVLVVPDVIANAGGVTVSYFE 364 Query: 436 WVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVLQAREMR 495 WVQDFSSFFWTEDEINLRLTRIMREAF AVWQLAEEK VSLRTAAFIVACTRVLQAREMR Sbjct: 365 WVQDFSSFFWTEDEINLRLTRIMREAFTAVWQLAEEKKVSLRTAAFIVACTRVLQAREMR 424 Query: 496 GLYP 499 GLYP Sbjct: 425 GLYP 428 >ref|YP_001351968.1| glutamate dehydrogenase (NAD(P)+) [Janthinobacterium sp. Marseille] gb|ABR88532.1| glutamate dehydrogenase (NAD(P)+) [Janthinobacterium sp. Marseille] Length = 456 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 362/424 (85%), Positives = 388/424 (91%) Query: 76 HEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRILVVDVPIERDDGTIA 135 H +PSYL P IG WGVYLEQIDRVTP+LGSLARWVET+KRPKRIL+VDVPIERDDGT+A Sbjct: 33 HAIPSYLTPPDIGAWGVYLEQIDRVTPYLGSLARWVETMKRPKRILIVDVPIERDDGTVA 92 Query: 136 HFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVDP 195 HFEGYRVQHNTSRGPGKGGVRFHQDV+LSEVMALSAWMTIKNAAVNVPYGGAKGGIRVDP Sbjct: 93 HFEGYRVQHNTSRGPGKGGVRFHQDVSLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVDP 152 Query: 196 KTLSRGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGSTSSGVV 255 KTLSR EL+RMTRRYTSEI IIIGPNKDIPAPDVNT+ QIMAWMMDTYSMNQGST+SGVV Sbjct: 153 KTLSRAELERMTRRYTSEINIIIGPNKDIPAPDVNTNEQIMAWMMDTYSMNQGSTASGVV 212 Query: 256 TGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAKVAVQGFGNVGGIAARLFAEA 315 TGKPISLGGSLGRHEATGRGVFVVGCEAAAKRG++IK A++AVQGFGNVGG+AARLFA A Sbjct: 213 TGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGLEIKGARIAVQGFGNVGGVAARLFAAA 272 Query: 316 GSKVVAVQDHVTTVFNAGGLDVPALQAYVAKHGSVKGFEGADEITDRAQFWSVDCDILVP 375 G+KVVAVQDH TV GLD+ ALQAYV +HGSV GF A+++ D AQFW +DCDILVP Sbjct: 273 GAKVVAVQDHAATVVRNSGLDIVALQAYVTQHGSVAGFPDAEQLDDAAQFWGLDCDILVP 332 Query: 376 AALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGVTVSYFE 435 AALEQQI NA +KA I+LEGANGPTTP ADDIL D+G+L+VPDVIANAGGVTVSYFE Sbjct: 333 AALEQQINRDNAAQVKASIVLEGANGPTTPEADDILHDRGILLVPDVIANAGGVTVSYFE 392 Query: 436 WVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVLQAREMR 495 WVQDFSSFFWTEDEIN RLTRIMREAFAAVW LAEEK VSLRTAAFIV CTRVLQAREMR Sbjct: 393 WVQDFSSFFWTEDEINSRLTRIMREAFAAVWVLAEEKKVSLRTAAFIVGCTRVLQAREMR 452 Query: 496 GLYP 499 GLYP Sbjct: 453 GLYP 456 >ref|YP_582553.1| glutamate dehydrogenase [Cupriavidus metallidurans CH34] gb|ABF07284.1| glutamate dehydrogenase [Cupriavidus metallidurans CH34] Length = 435 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 326/429 (75%), Positives = 378/429 (88%), Gaps = 3/429 (0%) Query: 72 NVPN-HEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRILVVDVPIERD 130 NV N H +PSYL +GPWG+YL+Q+DRVTP+LGSLARWVETLKRPKR ++VDVPIE D Sbjct: 9 NVSNGHTLPSYLNADNLGPWGIYLQQVDRVTPYLGSLARWVETLKRPKRAMIVDVPIELD 68 Query: 131 DGTIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKGG 190 +GTIAHFEGYRVQHN SRGPGKGGVRFHQDVTLSEVMALSAWM++KNAAVNVPYGGAKGG Sbjct: 69 NGTIAHFEGYRVQHNLSRGPGKGGVRFHQDVTLSEVMALSAWMSVKNAAVNVPYGGAKGG 128 Query: 191 IRVDPKTLSRGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGST 250 IRVDP+TLS GEL+R+TRRYTSEI IIIGP+KDIPAPDVNT++Q+MAWMMDTYSMN GST Sbjct: 129 IRVDPRTLSHGELERLTRRYTSEINIIIGPSKDIPAPDVNTNAQVMAWMMDTYSMNSGST 188 Query: 251 SSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAKVAVQGFGNVGGIAAR 310 ++GVVTGKPISLGGSLGRHEATGRGVFVVG EAA GMD+K A+VAVQGFGNVG +AA+ Sbjct: 189 ATGVVTGKPISLGGSLGRHEATGRGVFVVGSEAARNLGMDVKGARVAVQGFGNVGAVAAK 248 Query: 311 LFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAKHGSVKGFEGADEITDRAQFWSVDC 370 LF EAG+ VVAVQDH TT+F+ GLDVP + Y + G+++G+ E+ QFW VDC Sbjct: 249 LFHEAGATVVAVQDHRTTLFDPAGLDVPKMMEYASHSGTIEGYRA--EVISTEQFWEVDC 306 Query: 371 DILVPAALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGVT 430 DIL+PAALE Q+T +NA IKAK+++EGANGPTTP ADDILR++ +L+ PDVIANAGGVT Sbjct: 307 DILIPAALEGQLTASNAPKIKAKLVIEGANGPTTPEADDILRERNILVCPDVIANAGGVT 366 Query: 431 VSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVLQ 490 VSYFEWVQDFSSFFWTE+EIN RL RIM+EAF A+WQ+A++ V+LRTAAFIVACTR+LQ Sbjct: 367 VSYFEWVQDFSSFFWTEEEINERLVRIMQEAFRAIWQVAQDNKVTLRTAAFIVACTRILQ 426 Query: 491 AREMRGLYP 499 AREMRGLYP Sbjct: 427 AREMRGLYP 435 >ref|YP_004684339.1| glutamate dehydrogenase GdhA [Cupriavidus necator N-1] gb|AEI75858.1| glutamate dehydrogenase GdhA [Cupriavidus necator N-1] Length = 435 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 326/424 (76%), Positives = 377/424 (88%), Gaps = 2/424 (0%) Query: 76 HEVPSYLVPHGIGPWGVYLEQIDRVTPHLGSLARWVETLKRPKRILVVDVPIERDDGTIA 135 H +PSYL +GPWG+YL+Q+DRVTP+LGSLARWVETLKRPKR ++VDVPIE D+GTIA Sbjct: 14 HALPSYLNADNLGPWGIYLQQVDRVTPYLGSLARWVETLKRPKRAMIVDVPIELDNGTIA 73 Query: 136 HFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALSAWMTIKNAAVNVPYGGAKGGIRVDP 195 HFEGYRVQHN SRGPGKGGVRFHQDVTLSEVMALSAWM++KNAAVNVPYGGAKGGIRVDP Sbjct: 74 HFEGYRVQHNLSRGPGKGGVRFHQDVTLSEVMALSAWMSVKNAAVNVPYGGAKGGIRVDP 133 Query: 196 KTLSRGELQRMTRRYTSEIGIIIGPNKDIPAPDVNTDSQIMAWMMDTYSMNQGSTSSGVV 255 +TLS EL+R+TRRYTSEI IIIGP+KDIPAPDVNT++Q+MAWMMDTYSMN GST++GVV Sbjct: 134 RTLSHAELERLTRRYTSEINIIIGPSKDIPAPDVNTNAQVMAWMMDTYSMNSGSTATGVV 193 Query: 256 TGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAKVAVQGFGNVGGIAARLFAEA 315 TGKPISLGGSLGRHEATGRGVFVVG EAA G++IK A+VAVQGFGNVG +AA+LF EA Sbjct: 194 TGKPISLGGSLGRHEATGRGVFVVGSEAARNIGLEIKGARVAVQGFGNVGAVAAKLFHEA 253 Query: 316 GSKVVAVQDHVTTVFNAGGLDVPALQAYVAKHGSVKGFEGADEITDRAQFWSVDCDILVP 375 G+KVVAVQDH TT+F+ GLDVPA+ Y + G+++GF G E+ AQFW VDCDIL+P Sbjct: 254 GAKVVAVQDHRTTLFDPAGLDVPAMMEYASHSGTIEGFRG--EVLRTAQFWEVDCDILIP 311 Query: 376 AALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKGVLIVPDVIANAGGVTVSYFE 435 AALE QIT NA IKA++++EGANGPTTP ADDILR++ +L+ PDVIANAGGVTVSYFE Sbjct: 312 AALEGQITAENAPQIKARLVIEGANGPTTPEADDILRERNILVAPDVIANAGGVTVSYFE 371 Query: 436 WVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVSLRTAAFIVACTRVLQAREMR 495 WVQDFSSFFWTE+EIN RL RIM+EAF A+WQ+A++ V+LRTAAFIVACTR+LQAREMR Sbjct: 372 WVQDFSSFFWTEEEINQRLVRIMQEAFRAIWQVAQDNKVTLRTAAFIVACTRILQAREMR 431 Query: 496 GLYP 499 GLYP Sbjct: 432 GLYP 435