BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5003.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777242.1| glutamate/aspartate ABC transporter permease... 426 e-117 ref|YP_004754626.1| glutamate aspartate transport system permeas... 363 2e-98 ref|ZP_08274377.1| Glutamate Aspartate transport system permease... 294 9e-78 ref|YP_001771319.1| polar amino acid ABC transporter inner membr... 273 2e-71 ref|YP_002499649.1| polar amino acid ABC transporter inner membr... 272 3e-71 >ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65334.1| ABC-type glutamate/aspartate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 238/249 (95%), Positives = 246/249 (98%) Query: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALVLGTIFGTLRTTTKPWV 60 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMAL+LGTIFGTLRTTTKPWV Sbjct: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 Query: 61 VRIANGYVELFRNIPLLVQMFLWYFVVPELLPAAMGDWLKSLPEASFVTAFLALGFFTSS 120 VRIANGYVELFRNIPLLVQMFLWYFV+PELLPA +GDW+KSLP+ASFVTA LALGFFTSS Sbjct: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSS 120 Query: 121 RVAVQVSTGINALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 RVAVQV+TGI ALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS Sbjct: 121 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 Query: 181 VALTIGLVELTAATYSMREFTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYIT 240 VALTIGLVELTAATYSMREFTFQTFEAL+GATIIY+IISVIALFMARLLEKVTAVPGYIT Sbjct: 181 VALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYIT 240 Query: 241 GGSTSAGGH 249 GGSTSAGGH Sbjct: 241 GGSTSAGGH 249 >ref|YP_004754626.1| glutamate aspartate transport system permease gltJ [Collimonas fungivorans Ter331] gb|AEK63803.1| Glutamate Aspartate transport system permease protein gltJ [Collimonas fungivorans Ter331] Length = 250 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 197/250 (78%), Positives = 224/250 (89%), Gaps = 1/250 (0%) Query: 1 MHYNWNWGIFWEMSPDGIP-YIDTLLAGLKWTLATAACAWIMALVLGTIFGTLRTTTKPW 59 MHYNWNWGIFW+ SPDG+ Y+DTLLAGLKWTLA +A AWIMALV+GT+ GT+RT W Sbjct: 1 MHYNWNWGIFWQESPDGVSTYMDTLLAGLKWTLALSASAWIMALVIGTVIGTIRTMPNKW 60 Query: 60 VVRIANGYVELFRNIPLLVQMFLWYFVVPELLPAAMGDWLKSLPEASFVTAFLALGFFTS 119 VR+ANGYVELFRNIPL+VQMFLWYFV+PE++PA +G+WLKSLP ASF+TAFLALGFFTS Sbjct: 61 AVRVANGYVELFRNIPLIVQMFLWYFVMPEIVPAGIGNWLKSLPNASFITAFLALGFFTS 120 Query: 120 SRVAVQVSTGINALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNS 179 SR+AVQVS GINALPRGQ++AG ALGLT QTYRYVLLPM+FRIIIP+LTNEFAAIIKNS Sbjct: 121 SRIAVQVSAGINALPRGQKLAGTALGLTLPQTYRYVLLPMSFRIIIPSLTNEFAAIIKNS 180 Query: 180 SVALTIGLVELTAATYSMREFTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYI 239 SVALTIGLVELTAATYSMREFTFQTFEAL+GAT+IY+IIS IAL +AR LEK A+PG+I Sbjct: 181 SVALTIGLVELTAATYSMREFTFQTFEALTGATVIYVIISGIALLLARWLEKAIAIPGFI 240 Query: 240 TGGSTSAGGH 249 GS + GGH Sbjct: 241 AAGSANTGGH 250 >ref|ZP_08274377.1| Glutamate Aspartate transport system permease protein gltJ [Oxalobacteraceae bacterium IMCC9480] gb|EGF32155.1| Glutamate Aspartate transport system permease protein gltJ [Oxalobacteraceae bacterium IMCC9480] Length = 247 Score = 294 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 169/250 (67%), Positives = 202/250 (80%), Gaps = 4/250 (1%) Query: 1 MHYNWNWGIFWEMSPDGI-PYIDTLLAGLKWTLATAACAWIMALVLGTIFGTLRTTTKPW 59 M+YNWNW IFW SPDG+ Y+DTL++GL WTLATA AW+MAL +G I GT+RT W Sbjct: 1 MNYNWNWQIFWAPSPDGVGTYMDTLVSGLVWTLATALTAWVMALFIGAIVGTIRTMPNRW 60 Query: 60 VVRIANGYVELFRNIPLLVQMFLWYFVVPELLPAAMGDWLKSLPEASFVTAFLALGFFTS 119 VR+ANGYVELFRNIPLLVQMFLWYFV+PEL+PA+MG+WLK++P A F+TA + LGFFTS Sbjct: 61 AVRLANGYVELFRNIPLLVQMFLWYFVMPELVPASMGNWLKAMPNAPFITAVICLGFFTS 120 Query: 120 SRVAVQVSTGINALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNS 179 SRVAVQVS GI ALPRGQ +AG ALGLT QTYR+VLLPMAFRI++P LT+EF IIKNS Sbjct: 121 SRVAVQVSAGIQALPRGQTLAGTALGLTLPQTYRHVLLPMAFRIVLPPLTSEFLNIIKNS 180 Query: 180 SVALTIGLVELTAATYSMREFTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPGYI 239 SVALTIGL+ELTA SM EF+FQ FEA + TIIY+++++I + + LLEK AVPG+I Sbjct: 181 SVALTIGLMELTARARSMSEFSFQVFEAFTAVTIIYIVVNIIVVNLMGLLEKKVAVPGFI 240 Query: 240 TGGSTSAGGH 249 GS GGH Sbjct: 241 VAGS---GGH 247 >ref|YP_001771319.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA18885.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 240 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 146/238 (61%), Positives = 182/238 (76%), Gaps = 1/238 (0%) Query: 1 MHYNWNWGIFWEMSPDGI-PYIDTLLAGLKWTLATAACAWIMALVLGTIFGTLRTTTKPW 59 M+YNWNW IF+E SP+G Y D LL+GL WT+ TA CAW++A +G++ G +RT + Sbjct: 1 MNYNWNWSIFFEPSPEGTGTYADMLLSGLLWTIVTALCAWVIAFAVGSVIGVMRTLPNRF 60 Query: 60 VVRIANGYVELFRNIPLLVQMFLWYFVVPELLPAAMGDWLKSLPEASFVTAFLALGFFTS 119 NGYVELFRNIPLLVQMFLW+FV+PE+LP + G WLK LP+A F TA + LGFFT+ Sbjct: 61 AQAFGNGYVELFRNIPLLVQMFLWFFVLPEMLPQSWGTWLKQLPDAPFYTAVVCLGFFTA 120 Query: 120 SRVAVQVSTGINALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNS 179 SRVA QV GI ALPRGQRMAG ALGLT QTYRYVLLP A+RII+P LT+EF +KN+ Sbjct: 121 SRVAEQVRAGIQALPRGQRMAGTALGLTTSQTYRYVLLPNAYRIILPPLTSEFLNNLKNT 180 Query: 180 SVALTIGLVELTAATYSMREFTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPG 237 SVALTIGL+ELTA SM+EF+FQ FEA + ATI+Y+II+++ + A LE+ A+PG Sbjct: 181 SVALTIGLLELTARARSMQEFSFQVFEAFTAATILYIIINLLVVTAAGYLERKVAIPG 238 >ref|YP_002499649.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium nodulans ORS 2060] gb|ACL59346.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium nodulans ORS 2060] Length = 240 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 145/238 (60%), Positives = 181/238 (76%), Gaps = 1/238 (0%) Query: 1 MHYNWNWGIFWEMSPDGI-PYIDTLLAGLKWTLATAACAWIMALVLGTIFGTLRTTTKPW 59 M+YNWNW IF+++SP+G Y D LL+GL WT+ TA CAWI+A +G++ G +RT Sbjct: 1 MNYNWNWSIFFDLSPEGTGTYADMLLSGLVWTIVTALCAWIIAFAVGSVIGVMRTLPNRA 60 Query: 60 VVRIANGYVELFRNIPLLVQMFLWYFVVPELLPAAMGDWLKSLPEASFVTAFLALGFFTS 119 NGYVE+FRNIPLLVQMFLW+FV+PELLP G WLK LP+A F TA + LGFFT+ Sbjct: 61 AQAFGNGYVEVFRNIPLLVQMFLWFFVLPELLPQDWGTWLKQLPDAPFYTAVVCLGFFTA 120 Query: 120 SRVAVQVSTGINALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNS 179 SRVA QV GI +LPRGQRMAG ALGLT QTYRYVLLP A+RII+P LT+EF +KN+ Sbjct: 121 SRVAEQVRAGIQSLPRGQRMAGTALGLTTGQTYRYVLLPNAYRIILPPLTSEFLNNLKNT 180 Query: 180 SVALTIGLVELTAATYSMREFTFQTFEALSGATIIYLIISVIALFMARLLEKVTAVPG 237 SVALTIGL+ELTA SM+EF+FQ FEA + ATI+Y+II+++ + A LE+ A+PG Sbjct: 181 SVALTIGLLELTARARSMQEFSFQVFEAFTAATILYIIINLVVVTAAGFLERKVAIPG 238