BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4997.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777236.1| 50S ribosomal protein L13 [Herbaspirillum se...   277   4e-73
ref|YP_001351984.1| 50S ribosomal protein L13 [Janthinobacterium...   259   9e-68
ref|YP_004754614.1| 50S ribosomal protein L13p (L13Ae) [Collimon...   258   1e-67
ref|ZP_08275136.1| LSU ribosomal protein L13p (L13Ae) [Oxalobact...   254   3e-66
ref|YP_001098598.1| 50S ribosomal protein L13 [Herminiimonas ars...   253   5e-66

>ref|YP_003777236.1| 50S ribosomal protein L13 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65328.1| 50S ribosomal subunit L13 protein [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  277 bits (709), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG
Sbjct: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK
Sbjct: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120

Query: 121 KLKVYADGNHPHAAQQPKPLAL 142
           KLKVYADGNHPHAAQQPKPLAL
Sbjct: 121 KLKVYADGNHPHAAQQPKPLAL 142


>ref|YP_001351984.1| 50S ribosomal protein L13 [Janthinobacterium sp. Marseille]
 sp|A6SUN7|RL13_JANMA RecName: Full=50S ribosomal protein L13
 gb|ABR88804.1| large subunit ribosomal protein L13 [Janthinobacterium sp.
           Marseille]
          Length = 142

 Score =  259 bits (662), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 132/142 (92%), Positives = 136/142 (95%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAK HEVQR+WFVIDATD VLGRVASEVALRLRGKHKPEFTPHVDTGDFIVV+NAG
Sbjct: 1   MKTFSAKGHEVQRDWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVINAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTGTKATEKTY+RHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK
Sbjct: 61  KLRVTGTKATEKTYYRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120

Query: 121 KLKVYADGNHPHAAQQPKPLAL 142
           KLKVYA+  HPHAAQQPK L L
Sbjct: 121 KLKVYAEATHPHAAQQPKALEL 142


>ref|YP_004754614.1| 50S ribosomal protein L13p (L13Ae) [Collimonas fungivorans Ter331]
 gb|AEK63791.1| LSU ribosomal protein L13p (L13Ae) [Collimonas fungivorans Ter331]
          Length = 142

 Score =  258 bits (660), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/142 (92%), Positives = 135/142 (95%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAK HEVQR+WFVIDATD VLGRVASEVALRLRGKHKPEFTPHVDTGDFIVV+NAG
Sbjct: 1   MKTFSAKGHEVQRDWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVINAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTG KAT+KTYFRHSGYPGGIYETNF KMQQRFPGRALEKAVKGMLPKGPLGYAMIK
Sbjct: 61  KLRVTGAKATDKTYFRHSGYPGGIYETNFQKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120

Query: 121 KLKVYADGNHPHAAQQPKPLAL 142
           KLKVYADG+HPH AQQPK L L
Sbjct: 121 KLKVYADGSHPHTAQQPKALEL 142


>ref|ZP_08275136.1| LSU ribosomal protein L13p (L13Ae) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31395.1| LSU ribosomal protein L13p (L13Ae) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 142

 Score =  254 bits (649), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 126/142 (88%), Positives = 135/142 (95%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAK HEV+REWFVIDATD +LGRVASEVALRLRGKHKPEFTPHVDTGDFI+V+NAG
Sbjct: 1   MKTFSAKGHEVKREWFVIDATDKILGRVASEVALRLRGKHKPEFTPHVDTGDFIIVINAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTG+KATE+TY+RHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMI 
Sbjct: 61  KLRVTGSKATERTYYRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIT 120

Query: 121 KLKVYADGNHPHAAQQPKPLAL 142
           KLKVYA+  HPH+AQQPK L L
Sbjct: 121 KLKVYAEATHPHSAQQPKVLEL 142


>ref|YP_001098598.1| 50S ribosomal protein L13 [Herminiimonas arsenicoxydans]
 sp|A4G1T2|RL13_HERAR RecName: Full=50S ribosomal protein L13
 emb|CAL60469.1| 50S ribosomal protein L13 [Herminiimonas arsenicoxydans]
          Length = 142

 Score =  253 bits (647), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 130/142 (91%), Positives = 135/142 (95%)

Query: 1   MKTFSAKAHEVQREWFVIDATDLVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60
           MKTFSAK HEVQR+WFVIDATD VLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG
Sbjct: 1   MKTFSAKGHEVQRDWFVIDATDKVLGRVASEVALRLRGKHKPEFTPHVDTGDFIVVVNAG 60

Query: 61  KLRVTGTKATEKTYFRHSGYPGGIYETNFLKMQQRFPGRALEKAVKGMLPKGPLGYAMIK 120
           KLRVTGTKAT+KTY+RHSGYPGGIYETNF KMQ+RFPGRALEKAVKGMLPKGPLGYAMIK
Sbjct: 61  KLRVTGTKATDKTYYRHSGYPGGIYETNFKKMQERFPGRALEKAVKGMLPKGPLGYAMIK 120

Query: 121 KLKVYADGNHPHAAQQPKPLAL 142
           KLKVYA+  HPHAAQQPK L L
Sbjct: 121 KLKVYAEETHPHAAQQPKALEL 142