BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4996.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777235.1| 30S ribosomal protein S9 [Herbaspirillum ser...   219   8e-56
ref|ZP_04577951.1| 30S ribosomal protein S9 [Oxalobacter formige...   204   3e-51
ref|YP_001351985.1| small subunit ribosomal protein S9 [Janthino...   204   4e-51
ref|YP_001098599.1| 30S ribosomal protein S9 [Herminiimonas arse...   204   4e-51
ref|YP_004754613.1| 30S ribosomal protein S9p (S16e) [Collimonas...   203   7e-51

>ref|YP_003777235.1| 30S ribosomal protein S9 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65327.1| 30S ribosomal subunit S9 protein [Herbaspirillum seropedicae SmR1]
          Length = 130

 Score =  219 bits (559), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER
Sbjct: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK
Sbjct: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>ref|ZP_04577951.1| 30S ribosomal protein S9 [Oxalobacter formigenes HOxBLS]
 gb|EEO28913.1| 30S ribosomal protein S9 [Oxalobacter formigenes HOxBLS]
          Length = 130

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 120/130 (92%), Positives = 121/130 (93%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGNYNYGTGRRKSAVARVF+KAGSG I VNGKPA EYFSRETGLMVIRQPLELT NVER
Sbjct: 1   MIGNYNYGTGRRKSAVARVFLKAGSGKITVNGKPANEYFSRETGLMVIRQPLELTDNVER 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDI VNV GGGESGQAGAVRHGITRALIDYD GLK ALS AGFVTRDAREVERKKVGLRK
Sbjct: 61  FDIMVNVSGGGESGQAGAVRHGITRALIDYDIGLKPALSKAGFVTRDAREVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>ref|YP_001351985.1| small subunit ribosomal protein S9 [Janthinobacterium sp.
           Marseille]
 sp|A6SUN8|RS9_JANMA RecName: Full=30S ribosomal protein S9
 gb|ABR88959.1| small subunit ribosomal protein S9 [Janthinobacterium sp.
           Marseille]
          Length = 130

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/130 (91%), Positives = 122/130 (93%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGNYNYGTGRRKSAVARVFIK+GSG I+VNGKPA EYFSRETGLMVIRQPLELT NVE 
Sbjct: 1   MIGNYNYGTGRRKSAVARVFIKSGSGQIVVNGKPANEYFSRETGLMVIRQPLELTNNVET 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDI VNV+GGGESGQAGAVRHGITRALIDYDA LKS LS AGFVTRDAREVERKKVGLRK
Sbjct: 61  FDIMVNVNGGGESGQAGAVRHGITRALIDYDATLKSELSKAGFVTRDAREVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>ref|YP_001098599.1| 30S ribosomal protein S9 [Herminiimonas arsenicoxydans]
 sp|A4G1T3|RS9_HERAR RecName: Full=30S ribosomal protein S9
 emb|CAL60470.1| 30S ribosomal protein S9 [Herminiimonas arsenicoxydans]
          Length = 130

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 118/130 (90%), Positives = 121/130 (93%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGNYNYGTGRRKSAVARVFIK+GSG I+VNGKPA EYFSRETGLMVIRQPLELT NVE 
Sbjct: 1   MIGNYNYGTGRRKSAVARVFIKSGSGQIVVNGKPANEYFSRETGLMVIRQPLELTNNVET 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDI VNV+GGGESGQAGAVRHGITRALIDYDA LK  LS AGFVTRDAREVERKKVGLRK
Sbjct: 61  FDIMVNVNGGGESGQAGAVRHGITRALIDYDATLKPELSKAGFVTRDAREVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130


>ref|YP_004754613.1| 30S ribosomal protein S9p (S16e) [Collimonas fungivorans Ter331]
 gb|AEK63790.1| SSU ribosomal protein S9p (S16e) [Collimonas fungivorans Ter331]
          Length = 130

 Score =  203 bits (516), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 118/130 (90%), Positives = 121/130 (93%)

Query: 1   MIGNYNYGTGRRKSAVARVFIKAGSGNIIVNGKPAAEYFSRETGLMVIRQPLELTGNVER 60
           MIGNYNYGTGRRKSAVARVFIK+GSG I+VNGKPA EYFSRETGLMVIRQPLELT +VE 
Sbjct: 1   MIGNYNYGTGRRKSAVARVFIKSGSGQIVVNGKPANEYFSRETGLMVIRQPLELTNHVET 60

Query: 61  FDIKVNVHGGGESGQAGAVRHGITRALIDYDAGLKSALSNAGFVTRDAREVERKKVGLRK 120
           FDIKVNV GGGESGQAGAVRHGITRALIDYDA LK  LS AGFVTRDAREVERKKVGLRK
Sbjct: 61  FDIKVNVSGGGESGQAGAVRHGITRALIDYDATLKPELSKAGFVTRDAREVERKKVGLRK 120

Query: 121 ARRAKQFSKR 130
           ARRAKQFSKR
Sbjct: 121 ARRAKQFSKR 130