BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4991.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777232.1| integral membrane protein [Herbaspirillum se...   214   4e-54
ref|YP_004754610.1| hypothetical protein CFU_3964 [Collimonas fu...   171   3e-41
ref|YP_001098602.1| hypothetical protein HEAR0244 [Herminiimonas...   165   2e-39
ref|ZP_08275140.1| Integral membrane protein CcmA involved in ce...   164   3e-39
ref|YP_001351988.1| hypothetical protein mma_0298 [Janthinobacte...   162   2e-38

>ref|YP_003777232.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65324.1| integral membrane protein involved in cell shape determination
           protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  214 bits (544), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 120/131 (91%), Positives = 124/131 (94%)

Query: 1   MFTRKTKSTIDSLIGMSTSITGDVGFKGGLRIDGAITGNINAETGQPSVLVISEHAKVVG 60
           MFTRKTKSTIDSLIGMSTSI GDVGFKGGLRIDG I GNINAETGQPSVLVISEHAKVVG
Sbjct: 1   MFTRKTKSTIDSLIGMSTSIKGDVGFKGGLRIDGHINGNINAETGQPSVLVISEHAKVVG 60

Query: 61  EVRAAHLIVNGEIVGDVHSTELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           +V AAHLIVNGEI+GDVHS+ELLELQPKARITGNV+YKALEMHGGALVSGKLSHDQ  E 
Sbjct: 61  QVHAAHLIVNGEIIGDVHSSELLELQPKARITGNVYYKALEMHGGALVSGKLSHDQAEEA 120

Query: 121 PVLKLAASSEA 131
           PVLKLAASSEA
Sbjct: 121 PVLKLAASSEA 131


>ref|YP_004754610.1| hypothetical protein CFU_3964 [Collimonas fungivorans Ter331]
 gb|AEK63787.1| hypothetical protein CFU_3964 [Collimonas fungivorans Ter331]
          Length = 131

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/131 (74%), Positives = 108/131 (82%)

Query: 1   MFTRKTKSTIDSLIGMSTSITGDVGFKGGLRIDGAITGNINAETGQPSVLVISEHAKVVG 60
           MF RK KSTIDSLIG STSI GDV FKGGLRIDG + GN+ AE G+ SVLVISE AKV G
Sbjct: 1   MFNRKAKSTIDSLIGSSTSIEGDVHFKGGLRIDGNVKGNVVAEPGETSVLVISESAKVEG 60

Query: 61  EVRAAHLIVNGEIVGDVHSTELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           +VR AHL+VNGEI G+V+S ELLELQPKARITG+V YKALEMH GALVSGKL+H+Q V  
Sbjct: 61  DVRVAHLVVNGEISGNVYSAELLELQPKARITGDVNYKALEMHSGALVSGKLTHEQNVAE 120

Query: 121 PVLKLAASSEA 131
           PVLKLA S  A
Sbjct: 121 PVLKLAMSQSA 131


>ref|YP_001098602.1| hypothetical protein HEAR0244 [Herminiimonas arsenicoxydans]
 emb|CAL60473.1| Conserved hypothetical protein, putative protein CcmA
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/126 (72%), Positives = 109/126 (86%), Gaps = 1/126 (0%)

Query: 1   MFTRKTKSTIDSLIGMSTSITGDVGFKGGLRIDGAITGNINAETGQPSVLVISEHAKVVG 60
           MF+RKTKSTIDSLIG +T+I G+V FKGGLRIDG + G++ A+  + S+LVISEHAKV G
Sbjct: 1   MFSRKTKSTIDSLIGAATNIAGNVHFKGGLRIDGCVKGDVIADADETSMLVISEHAKVEG 60

Query: 61  EVRAAHLIVNGEIVGDVHSTELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           EVR AHL+VNG IVG V+S+ELLELQPKARITG+V YKALEMHGGA+VSGKL+HD  +E 
Sbjct: 61  EVRVAHLLVNGVIVGPVYSSELLELQPKARITGDVHYKALEMHGGAVVSGKLTHD-TMEE 119

Query: 121 PVLKLA 126
           P+LKLA
Sbjct: 120 PILKLA 125


>ref|ZP_08275140.1| Integral membrane protein CcmA involved in cell shape determination
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31399.1| Integral membrane protein CcmA involved in cell shape determination
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 134

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 94/126 (74%), Positives = 107/126 (84%), Gaps = 1/126 (0%)

Query: 1   MFTRKTKSTIDSLIGMSTSITGDVGFKGGLRIDGAITGNINAETGQPSVLVISEHAKVVG 60
           MF RK+KSTIDSLIG+STSI GDV FKGGLRIDG + GN+ A  G+ S+LVISE AK+ G
Sbjct: 1   MFGRKSKSTIDSLIGISTSIVGDVHFKGGLRIDGHVKGNVIANPGETSMLVISEQAKIEG 60

Query: 61  EVRAAHLIVNGEIVGDVHSTELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           +VR AHL+VNGEIVG V S ELLELQPKARITG+V+YKALEMHGGA+VSGKL+HD  V  
Sbjct: 61  DVRVAHLVVNGEIVGQVFSAELLELQPKARITGDVYYKALEMHGGAVVSGKLTHD-LVGE 119

Query: 121 PVLKLA 126
           PVLKLA
Sbjct: 120 PVLKLA 125


>ref|YP_001351988.1| hypothetical protein mma_0298 [Janthinobacterium sp. Marseille]
 gb|ABR90401.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 133

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/126 (71%), Positives = 108/126 (85%), Gaps = 2/126 (1%)

Query: 1   MFTRKTKSTIDSLIGMSTSITGDVGFKGGLRIDGAITGNINAETGQPSVLVISEHAKVVG 60
           MF+RK KSTIDSLIG ST I+G+V FKGGLRIDG + G++ A+  + S+LVISEHA+V G
Sbjct: 1   MFSRKAKSTIDSLIGASTIISGNVHFKGGLRIDGCVKGDVIAQADEISMLVISEHARVEG 60

Query: 61  EVRAAHLIVNGEIVGDVHSTELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           EVR AHL+VNGEIVG V S+ELLELQPKARITG+V YKALEMHGGA+VSGKL+H  +V+ 
Sbjct: 61  EVRVAHLLVNGEIVGPVFSSELLELQPKARITGDVNYKALEMHGGAVVSGKLTH--EVDE 118

Query: 121 PVLKLA 126
           P+LKLA
Sbjct: 119 PILKLA 124