BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4985.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777227.1| twitching motility protein [Herbaspirillum s... 211 6e-53 ref|YP_001354644.1| PilI twitching motility protein [Janthinobac... 114 7e-24 emb|CAL62862.2| putative chemotaxis signal transduction protein ... 113 2e-23 ref|YP_004693681.1| CheW protein [Nitrosomonas sp. Is79A3] >gi|3... 105 3e-21 ref|YP_001100983.1| PilI protein involved in twitching motility ... 104 6e-21 >ref|YP_003777227.1| twitching motility protein [Herbaspirillum seropedicae SmR1] gb|ADJ65319.1| twitching motility protein [Herbaspirillum seropedicae SmR1] Length = 194 Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 119/194 (61%), Positives = 141/194 (72%) Query: 12 MPHTKDFVINAPAARSSPGLPEREGLEQFQTSLLARMAASDNESMRSRRLAVAMGEHCYL 71 MPHTKDFVIN AA SSP + RE L+ FQ SL+ RM A D+ES SRRLAVA+G L Sbjct: 1 MPHTKDFVINTQAAASSPSMRSRENLQSFQASLIERMQACDHESQSSRRLAVAIGAQACL 60 Query: 72 VPLAQAGEIVPLSGLAITPVPATRDWFRGLLNIRGSLIGLADLMGLAGAVPQEIGRSSHV 131 +PL+ EIVPL G ++TPVPATR WF GLLN+RG+L+G+ADL L+GA Q G SH Sbjct: 61 IPLSHTSEIVPLDGQSLTPVPATRPWFLGLLNLRGNLVGIADLAALSGAPAQSTGPGSHA 120 Query: 132 LLLAHGLAPQCGLLVSRVLGLRDITEMTQISKNYDAEIPLLGLAGRYKDSGGQQWDELDL 191 L+LA LA QCGLL+S VLGLRDI+EMT ISKN D I L + GRYKD GG WDELDL Sbjct: 121 LVLAPTLAAQCGLLISAVLGLRDISEMTPISKNDDDRIELPTVNGRYKDKGGTCWDELDL 180 Query: 192 SLLSQDSRFLQIGR 205 + L++ FLQ+GR Sbjct: 181 AALAKHEAFLQVGR 194 >ref|YP_001354644.1| PilI twitching motility protein [Janthinobacterium sp. Marseille] gb|ABR90451.1| PilI twitching motility protein [Janthinobacterium sp. Marseille] Length = 191 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 77/191 (40%), Positives = 102/191 (53%), Gaps = 6/191 (3%) Query: 15 TKDFVINAPAARSSPGLPEREGLEQFQTSLLARM-AASDNESMRSRRLAVAMGEHCYLVP 73 T DF + + +S R L +FQ L+ RM A R +L V +GE +L+ Sbjct: 5 TSDFQTDIASPKSDI-TARRTRLREFQAQLVERMQTARSGADTRVNQLGVLIGEQRWLLN 63 Query: 74 LAQAGEIVPLSGLAITPVPATRDWFRGLLNIRGSLIGLADLMGLAGAVPQEIGRSSHVLL 133 L AGEIV + ITPVP T+ WF GL NIRG+LI + D G I + S ++ Sbjct: 64 LQTAGEIVAVG--TITPVPLTQPWFLGLSNIRGNLISVIDFARFQGLPATNIEKDSRIVA 121 Query: 134 LAHGLAPQCGLLVSRVLGLRDITEMTQISKNYDAEIPLLGLAGRYKDSGGQQWDELDLSL 193 LA GLLVSRVLGLR++ EM + + DA P + RY D Q W ELDLS Sbjct: 122 FGPALAFNSGLLVSRVLGLRNVAEMQLHADDADAAPPW--ASKRYLDQESQVWTELDLSS 179 Query: 194 LSQDSRFLQIG 204 + Q+ +FLQ+G Sbjct: 180 VIQNPQFLQVG 190 >emb|CAL62862.2| putative chemotaxis signal transduction protein CheW-like, putative PilI [Herminiimonas arsenicoxydans] Length = 190 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 6/172 (3%) Query: 34 REGLEQFQTSLLARM-AASDNESMRSRRLAVAMGEHCYLVPLAQAGEIVPLSGLAITPVP 92 R L +FQ L+ RM A E R +L V +G + +L+ L AGEIV + IT VP Sbjct: 23 RTRLREFQAQLVERMQTARSGEDTRINQLGVMIGGNRWLLDLQTAGEIVSVG--TITAVP 80 Query: 93 ATRDWFRGLLNIRGSLIGLADLMGLAGAVPQEIGRSSHVLLLAHGLAPQCGLLVSRVLGL 152 T+ WF GL NIRG+LI + D G G P I + ++ + L+ GLLVSRVLGL Sbjct: 81 LTQPWFLGLANIRGNLISVIDFAGFQGQAPTAIDKDCRIVAFSPALSFNSGLLVSRVLGL 140 Query: 153 RDITEMTQISKNYDAEIPLLGLAGRYKDSGGQQWDELDLSLLSQDSRFLQIG 204 ++ EM + D E ++ RY D Q W ELDLSL+ Q+ +FL +G Sbjct: 141 HNVAEM---ERQADGEPSAPWVSKRYIDRESQVWRELDLSLVIQNPQFLHVG 189 >ref|YP_004693681.1| CheW protein [Nitrosomonas sp. Is79A3] gb|AEJ00282.1| CheW protein [Nitrosomonas sp. Is79A3] Length = 168 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 4/169 (2%) Query: 37 LEQFQTSLLARMAASDNESMRSRRLAVAMGEHCYLVPLAQAGEIVPLSGLAITPVPATRD 96 +E++Q +L ++ ++ S L VA+GE YL+P+ + E+V + LA VP T+ Sbjct: 3 IEEYQHTLTEQIQSAGKGDTSSTVLGVAVGEDRYLIPMTEVSEVVQIPKLA--HVPLTQP 60 Query: 97 WFRGLLNIRGSLIGLADLMGLAGAVPQEIGRSSHVLLLAHGLAPQCGLLVSRVLGLRDIT 156 WF GL N+RG+L G+ DL G P + S +LL + G G +V+ +LG+R+I+ Sbjct: 61 WFLGLANVRGNLYGITDLGVYLGGSPTQFNLKSRILLASPGNKMFGGFIVNSMLGIRNIS 120 Query: 157 EMTQISKNYDAEIPLLGLAGRYKDSGGQQWDELDLSLLSQDSRFLQIGR 205 + T + K+ ++P G+ YKD+ G+ W EL L L +D +FLQI R Sbjct: 121 DFTPV-KSAKKKLP-KGIIANYKDTEGRLWRELSLHELIRDEKFLQIAR 167 >ref|YP_001100983.1| PilI protein involved in twitching motility [Herminiimonas arsenicoxydans] Length = 154 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 50 ASDNESMRSRRLAVAMGEHCYLVPLAQAGEIVPLSGLAITPVPATRDWFRGLLNIRGSLI 109 A E R +L V +G + +L+ L AGEIV + IT VP T+ WF GL NIRG+LI Sbjct: 4 ARSGEDTRINQLGVMIGGNRWLLDLQTAGEIVSVG--TITAVPLTQPWFLGLANIRGNLI 61 Query: 110 GLADLMGLAGAVPQEIGRSSHVLLLAHGLAPQCGLLVSRVLGLRDITEMTQISKNYDAEI 169 + D G G P I + ++ + L+ GLLVSRVLGL ++ EM + D E Sbjct: 62 SVIDFAGFQGQAPTAIDKDCRIVAFSPALSFNSGLLVSRVLGLHNVAEM---ERQADGEP 118 Query: 170 PLLGLAGRYKDSGGQQWDELDLSLLSQDSRFLQIG 204 ++ RY D Q W ELDLSL+ Q+ +FL +G Sbjct: 119 SAPWVSKRYIDRESQVWRELDLSLVIQNPQFLHVG 153