BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4981.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777223.1| LysR family transcription regulator protein ... 509 e-142 ref|YP_004700512.1| LysR family transcriptional regulator [Pseud... 259 4e-67 ref|YP_001346724.1| putative transcriptional regulator [Pseudomo... 253 5e-65 gb|AEO73650.1| putative transcriptional regulator [Pseudomonas a... 242 8e-62 ref|NP_252465.1| transcriptional regulator [Pseudomonas aerugino... 241 1e-61 >ref|YP_003777223.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65315.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 280/303 (92%), Positives = 290/303 (95%) Query: 69 MISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQ 128 MISIRQLRYFVEIVEARGYTRA+ERLF+AQSALSRQIKELEADLDVVL++REAK FELTQ Sbjct: 1 MISIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQ 60 Query: 129 AGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFP 188 AGQDFYERSR+ILLDLDRAVAQARTIGKGEHGALRLLHSSSVPL+APLGP LN ALK FP Sbjct: 61 AGQDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFP 120 Query: 189 GISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLA 248 GISLEISQAPSEYQAREIVEGSADIGLARLPILRA+PNL STVLYRERLVAAVPA HRLA Sbjct: 121 GISLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLA 180 Query: 249 ARSEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 308 R EVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG Sbjct: 181 QRQEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 240 Query: 309 FGIAVVPQSMASISLSAGVSFPALKDADFHSEVALLRRRDAPAMVQQFVEAFVARLQEAG 368 FGIAVVPQSMAS SL+AGVSFPALKD DFHSEVALLRRRDAPAMV QFVEAFVARL EAG Sbjct: 241 FGIAVVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPAMVGQFVEAFVARLHEAG 300 Query: 369 VTG 371 ++ Sbjct: 301 LSA 303 >ref|YP_004700512.1| LysR family transcriptional regulator [Pseudomonas putida S16] gb|AEJ11632.1| LysR family transcriptional regulator [Pseudomonas putida S16] Length = 292 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 155/294 (52%), Positives = 199/294 (67%), Gaps = 2/294 (0%) Query: 69 MISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQ 128 M SIRQLRYFVEI E ++ A+ERL+IAQSALSRQIKELE L L +R A+ LT Sbjct: 1 MTSIRQLRYFVEIAECGSFSAAAERLYIAQSALSRQIKELEQQLGTPLFERTARLPRLTL 60 Query: 129 AGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFP 188 AGQ F ER+RR+L DL +A R IG+G G+LRL HSS+VPL+ PL L L+D P Sbjct: 61 AGQAFLERARRLLADLAQAERVTRDIGEGLQGSLRLNHSSTVPLTGPLLARLGGYLRDNP 120 Query: 189 GISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLA 248 G+SLEI+Q SE Q +I G DIGL RLP+LR H + L+ E L+ AV A H LA Sbjct: 121 GVSLEIAQQSSEAQLEDIAAGRLDIGLLRLPVLRQHEGVVLHELFSEPLLLAVAAAHPLA 180 Query: 249 ARSEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAG 308 + +V++ +LR+E F+++PHRDRGGLSYL A C+ GF+PR A+ SRK + L L+ AG Sbjct: 181 SAPQVKLEQLREERFISIPHRDRGGLSYLSASMCMEAGFFPRAAQVLSRKTTQLQLIQAG 240 Query: 309 FGIAVVPQSMASISLSAGVSFPALKDADFHSEVALLRRRDAPAMVQQFVEAFVA 362 FG+A++P+ M I+ A VSF AL + S VA+ RRDA +MV+QFV A A Sbjct: 241 FGVALLPECMREIA-PASVSFVAL-EGGCESTVAMACRRDAGSMVRQFVTAMQA 292 >ref|YP_001346724.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR85626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 302 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 155/297 (52%), Positives = 199/297 (67%), Gaps = 2/297 (0%) Query: 69 MISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQ 128 MIS+RQL YFVEIVE+ G++RA+ERLF+AQSALSRQ++ELE + L++R + ELT Sbjct: 1 MISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQVELTP 60 Query: 129 AGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFP 188 AG+ F R++R+L DL+ A AR +G+G HG LRL HSSSVPL L L L Sbjct: 61 AGRAFLPRAQRLLGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVDGLQAALRGYLAAQS 120 Query: 189 GISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLA 248 G+ LE++Q SE Q ++ EG D+GL RLP+LR HP L LYRE L+ A+ A H LA Sbjct: 121 GVRLELTQQSSEQQLADLAEGRLDVGLLRLPVLRQHPRLHLRALYREPLLLALAADHPLA 180 Query: 249 AR-SEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNA 307 R + V +A L E FV++PH RGGLSY AE C+ GFYPR ARA SRK S L L+ A Sbjct: 181 RRETPVALAALAGETFVSIPHLQRGGLSYRAAELCLGAGFYPRPARALSRKTSQLQLIEA 240 Query: 308 GFGIAVVPQSMASISLSAGVSFPALKDADFHSEVALLRRRDAPAMVQQFVEAFVARL 364 GFG+A+VP SM +I+ A V F L +A+ +SEVAL RRD +V+ FVE F+ L Sbjct: 241 GFGVALVPASMRAIAPPA-VRFLPLAEAEAYSEVALAWRRDDSPLVEGFVEYFLENL 296 >gb|AEO73650.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 307 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 157/301 (52%), Positives = 202/301 (67%), Gaps = 2/301 (0%) Query: 65 GENSMISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAF 124 G MIS+RQL YFVEIVE+ G++RA+ERLF+AQSALSRQ++ELE + L++R + Sbjct: 2 GNLPMISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQV 61 Query: 125 ELTQAGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAAL 184 ELT AG+ F R++R+L DL+ A AR +G+G HG LRL HSSSVPL L L L Sbjct: 62 ELTPAGRAFLPRAQRLLGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVGGLQAALRGYL 121 Query: 185 KDFPGISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPAT 244 G+ LE++Q SE Q ++ EG D+GL RLP+LR HP L LYRE L+ A+ A Sbjct: 122 AAQSGVRLELTQQSSEQQLADLAEGRLDLGLLRLPVLRQHPRLHLRALYREPLLLALAAD 181 Query: 245 HRLAAR-SEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLS 303 H LA R + V +A L E FV++PH RGGLSY AE C+ GFYPR ARA SRK S L Sbjct: 182 HPLARREAPVALAALAGETFVSIPHLQRGGLSYRAAELCLGAGFYPRPARALSRKTSQLQ 241 Query: 304 LVNAGFGIAVVPQSMASISLSAGVSFPALKDADFHSEVALLRRRDAPAMVQQFVEAFVAR 363 L+ AGFG+A+VP SM +I+ A VSF +L +A+ +SEVAL RRD +V+ FVE F+ Sbjct: 242 LIEAGFGVALVPASMRAIAPPA-VSFMSLAEAEAYSEVALAWRRDDSPLVEGFVEYFLEN 300 Query: 364 L 364 L Sbjct: 301 L 301 >ref|NP_252465.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|AAG07163.1|AE004796_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 302 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 156/297 (52%), Positives = 201/297 (67%), Gaps = 2/297 (0%) Query: 69 MISIRQLRYFVEIVEARGYTRASERLFIAQSALSRQIKELEADLDVVLIKREAKAFELTQ 128 MIS+RQL YFVEIVE+ G++RA+ERLF+AQSALSRQ++ELE + L++R + ELT Sbjct: 1 MISLRQLHYFVEIVESGGFSRAAERLFVAQSALSRQVRELEDSIGTPLLRRGPRQVELTP 60 Query: 129 AGQDFYERSRRILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLSAPLGPTLNAALKDFP 188 AG+ F R++R+L DL+ A AR +G+G HG LRL HSSSVPL L L L Sbjct: 61 AGRAFLPRAQRLLGDLEAARRLAREVGEGGHGLLRLGHSSSVPLVGGLQAALRGYLAVQS 120 Query: 189 GISLEISQAPSEYQAREIVEGSADIGLARLPILRAHPNLESTVLYRERLVAAVPATHRLA 248 G+ LE++Q SE Q ++ EG D+GL RLP+LR HP L LYRE L+ A+ A H LA Sbjct: 121 GVRLELTQQSSEQQLADLAEGRLDLGLLRLPVLRQHPRLHLRALYREPLLLALAADHPLA 180 Query: 249 AR-SEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNA 307 R + V +A L E FV++PH RGGLSY AE C+ GFYPR ARA SRK S L L+ A Sbjct: 181 RREAPVALAALAGETFVSIPHLQRGGLSYRAAELCLGAGFYPRPARALSRKTSQLQLIEA 240 Query: 308 GFGIAVVPQSMASISLSAGVSFPALKDADFHSEVALLRRRDAPAMVQQFVEAFVARL 364 GFG+A+VP SM +I+ A VSF +L +A+ +SEVAL RRD +V+ FVE F+ L Sbjct: 241 GFGVALVPASMRAIAPPA-VSFMSLAEAEAYSEVALAWRRDDSPLVEGFVEYFLENL 296