BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4977.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777219.1| exodeoxyribonuclease VII small subunit [Herb...    96   2e-18
ref|YP_001352019.1| exodeoxyribonuclease VII small subunit [Jant...    95   4e-18
ref|YP_001098633.1| exodeoxyribonuclease VII small subunit [Herm...    94   7e-18
ref|YP_004751389.1| exodeoxyribonuclease VII small subunit [Coll...    92   2e-17
ref|ZP_08274829.1| Putative Exodeoxyribonuclease VII small subun...    87   6e-16

>ref|YP_003777219.1| exodeoxyribonuclease VII small subunit [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ65311.1| exodeoxyribonuclease VII small subunit protein [Herbaspirillum
          seropedicae SmR1]
          Length = 92

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/68 (88%), Positives = 64/68 (94%)

Query: 24 FEEAMEELEQLVARMEAGELPLEASVAAYKRGSELVKFCAGQLDKVDSQVKLLEGDMLKP 83
          FE+AM+ELEQLVA+MEAGELPLEASVAAYKRGSELVKFCA QLDKVD+QVKLLEGDMLKP
Sbjct: 22 FEQAMQELEQLVAQMEAGELPLEASVAAYKRGSELVKFCAAQLDKVDTQVKLLEGDMLKP 81

Query: 84 FNAADAAG 91
          F AAD  G
Sbjct: 82 FQAADMDG 89


>ref|YP_001352019.1| exodeoxyribonuclease VII small subunit [Janthinobacterium sp.
          Marseille]
 sp|A6SUS2|EX7S_JANMA RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
          Full=Exodeoxyribonuclease VII small subunit;
          Short=Exonuclease VII small subunit
 gb|ABR91684.1| exodeoxyribonuclease VII small subunit [Janthinobacterium sp.
          Marseille]
          Length = 84

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/83 (78%), Positives = 73/83 (87%)

Query: 12 AASAASAALPASFEEAMEELEQLVARMEAGELPLEASVAAYKRGSELVKFCAGQLDKVDS 71
          +  + SAALP+SFEEAM ELEQLVARMEAGELPLEASVAAYKRGSELVK+CA QL+KVD+
Sbjct: 2  SKKSTSAALPSSFEEAMAELEQLVARMEAGELPLEASVAAYKRGSELVKYCAAQLEKVDN 61

Query: 72 QVKLLEGDMLKPFNAADAAGGDD 94
          QVK+LEGDMLKPFNA  A   D+
Sbjct: 62 QVKVLEGDMLKPFNADRAIEADE 84


>ref|YP_001098633.1| exodeoxyribonuclease VII small subunit [Herminiimonas
          arsenicoxydans]
 sp|A4G1W7|EX7S_HERAR RecName: Full=Exodeoxyribonuclease 7 small subunit; AltName:
          Full=Exodeoxyribonuclease VII small subunit;
          Short=Exonuclease VII small subunit
 emb|CAL60504.1| Exodeoxyribonuclease VII small subunit (Exonuclease VII small
          subunit) (XseB) [Herminiimonas arsenicoxydans]
          Length = 84

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/83 (79%), Positives = 73/83 (87%)

Query: 12 AASAASAALPASFEEAMEELEQLVARMEAGELPLEASVAAYKRGSELVKFCAGQLDKVDS 71
          +  + SAALP+SFEEAM ELEQLVARMEAGELPLEASVAAYKRGSELVK+CA QL+KVDS
Sbjct: 2  SKKSTSAALPSSFEEAMAELEQLVARMEAGELPLEASVAAYKRGSELVKYCAAQLEKVDS 61

Query: 72 QVKLLEGDMLKPFNAADAAGGDD 94
          QVK+LEGDMLKPFNA  A   D+
Sbjct: 62 QVKVLEGDMLKPFNADRAIEADE 84


>ref|YP_004751389.1| exodeoxyribonuclease VII small subunit [Collimonas fungivorans
          Ter331]
 gb|AEK60566.1| Exodeoxyribonuclease VII small subunit [Collimonas fungivorans
          Ter331]
          Length = 87

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/81 (76%), Positives = 69/81 (85%), Gaps = 3/81 (3%)

Query: 17 SAALPASFEEAMEELEQLVARMEAGELPLEASVAAYKRGSELVKFCAGQLDKVDSQVKLL 76
          S + PASFE+AM ELEQLVA+MEAGELPLEASVAAYKRGSELVKFCA QL+KVDSQVK+L
Sbjct: 7  STSSPASFEQAMAELEQLVAQMEAGELPLEASVAAYKRGSELVKFCALQLEKVDSQVKVL 66

Query: 77 EGDMLKPFNA---ADAAGGDD 94
          EGDMLKPF      D +G D+
Sbjct: 67 EGDMLKPFTGEALKDHSGADE 87


>ref|ZP_08274829.1| Putative Exodeoxyribonuclease VII small subunit (Exonuclease VII
          small subunit) (XseB) [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF31700.1| Putative Exodeoxyribonuclease VII small subunit (Exonuclease VII
          small subunit) (XseB) [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 93

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/77 (75%), Positives = 66/77 (85%)

Query: 17 SAALPASFEEAMEELEQLVARMEAGELPLEASVAAYKRGSELVKFCAGQLDKVDSQVKLL 76
          SA  PASFE+AM EL +LVA+MEAGELPLEASVAAYKRGSELVKFCA QLDKVDSQV++L
Sbjct: 17 SADTPASFEDAMAELARLVAQMEAGELPLEASVAAYKRGSELVKFCAVQLDKVDSQVRVL 76

Query: 77 EGDMLKPFNAADAAGGD 93
          EGDMLKP ++     G+
Sbjct: 77 EGDMLKPLDSVAGEAGE 93