BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4973.p (447 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_371210.1| hypothetical protein Bcep18194_B0452 [Burkholde... 348 1e-93 ref|YP_001115927.1| hypothetical protein Bcep1808_3474 [Burkhold... 337 3e-90 ref|YP_776453.1| hypothetical protein Bamb_4569 [Burkholderia am... 336 5e-90 ref|YP_838800.1| hypothetical protein Bcen2424_5174 [Burkholderi... 335 8e-90 ref|YP_002235014.1| hypothetical protein BCAM2412 [Burkholderia ... 335 8e-90 >ref|YP_371210.1| hypothetical protein Bcep18194_B0452 [Burkholderia sp. 383] gb|ABB10566.1| hypothetical protein Bcep18194_B0452 [Burkholderia sp. 383] Length = 452 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 207/418 (49%), Positives = 268/418 (64%), Gaps = 8/418 (1%) Query: 27 AVQWYEVNLSGSGPYYRMRLPSEIYAASQRSDLGDVRIVNGAGERVPFSLEAATVPAPVK 86 A Q + ++L G+ YY++ +P +YAAS+R DLGDVRI NGAGE VP+SL+A V P Sbjct: 28 AAQRFSLDLDGTAAYYQLTVPQPVYAASRRDDLGDVRIFNGAGEPVPYSLDAPAVAVPAV 87 Query: 87 RVVPAPVTWFAVPAANRAGGQPRLGVSIAPDGSLRAEVGAPA-APRGADESVLVDLGR-E 144 PV WF +P A G LGV++ PDG+LRA V AP A GAD LVDL + Sbjct: 88 PPTRTPVHWFPLPPARADNGNAPLGVTVGPDGALRAGVAAPVPAKHGAD---LVDLSHAD 144 Query: 145 ASVSGLRIHLGGTQYQGRVQVESSADLAQWHSVAEADLLKASSNGKQLRQERVPLDGLRQ 204 + L +H+G YQGRV VE+S DL W S+ LLK L QER+ L+G Sbjct: 145 GDIDALLVHIGDDSYQGRVAVEASDDLRSWRSLGSTQLLKVGHGDAMLVQERIALEGAAP 204 Query: 205 RYLRLSWPDGVPEITAIDAETVVVEAVPGNDAPALR-WQAAAQVRTGSLAGEYLFESGGV 263 RYLRL W DG P +T+ID ET +A + A R W+ A +VR G GEYLF++ G Sbjct: 205 RYLRLDWLDGAPAVTSIDVETHPRDARGTDTASVPRQWRDAVRVRAGGTPGEYLFDTDGA 264 Query: 264 YPAESVRIDLPQPNTIAKVSLQSRSEAQVSWREVATGSVFRLQGKSGEERSAPLQFHVTP 323 YP + VRIDLPQPNT+A+ +LQSR++AQ WR+VA +FRLQGK+GE+R+ PL+F Sbjct: 265 YPVDRVRIDLPQPNTVARATLQSRADAQAPWRDVAGAVLFRLQGKAGEQRNPPLEFAANT 324 Query: 324 ERNWRILVDMRNGGLGSGLPQVSLGWRPAQLTFVARGSPPFRMGAGDAALAPVAQPTAEL 383 +R WRI+VDMRNGG G G P V++GW PA LTFVARG+PPF +G GDA+L A L Sbjct: 325 DRAWRIVVDMRNGGFGGGQPAVAVGWHPAALTFVARGTPPFTLGVGDASLVSSAVSRDAL 384 Query: 384 LMGATPEMGNATLGARLPMAQESAAAA--SASTRNIVLWVGLIIAVAALGAIAWRLAR 439 L+G PE+ A +GA LP++ + A A + + R VLW L++AV LG IAWRLA+ Sbjct: 385 LVGMAPEVRPARVGAALPVSAVAPAPAVDTDAPRRYVLWGALVVAVGVLGTIAWRLAK 442 >ref|YP_001115927.1| hypothetical protein Bcep1808_3474 [Burkholderia vietnamiensis G4] gb|ABO56462.1| conserved hypothetical protein [Burkholderia vietnamiensis G4] Length = 452 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 203/413 (49%), Positives = 261/413 (63%), Gaps = 6/413 (1%) Query: 31 YEVNLSGSGPYYRMRLPSEIYAASQRSDLGDVRIVNGAGERVPFSLEAATVPAPVKRVVP 90 + ++L GS YY++ +P +YA S+R DLGDVRI NGAGE VP+SL+A A Sbjct: 32 FALDLDGSAAYYQLTVPQPVYAGSRRDDLGDVRIFNGAGEPVPYSLDAPATTAAAVPPTR 91 Query: 91 APVTWFAVPAANRAGGQPRLGVSIAPDGSLRAEVGAPAAPRGADESVLVDLGR-EASVSG 149 P WFA+P + LGV++APDGSLRA V APA R LVDL + V Sbjct: 92 TPAHWFALPRTRGNDDRGPLGVAVAPDGSLRATVAAPA--RATHAVDLVDLSHADGDVDA 149 Query: 150 LRIHLGGTQYQGRVQVESSADLAQWHSVAEADLLKASSNGKQLRQERVPLDGLRQRYLRL 209 L +HLG YQGRV VE+S DL W S+ LLK + G L QER+ LDG+ RYLRL Sbjct: 150 LLVHLGDDSYQGRVAVEASDDLHDWRSLGSVQLLKVARGGDTLVQERIALDGMGSRYLRL 209 Query: 210 SWPDGVPEITAIDAETVVVEAVPGNDAPALR-WQAAAQVRTGSLAGEYLFESGGVYPAES 268 W D VP I +ID ET +A + R W+ A +VR G GEY F++ G YP + Sbjct: 210 EWLDDVPSIASIDVETRPRDARAVDTGAVPRQWRDAVRVRAGDTPGEYRFDTDGPYPVDR 269 Query: 269 VRIDLPQPNTIAKVSLQSRSEAQVSWREVATGSVFRLQGKSGEERSAPLQFHVTPERNWR 328 +RIDLPQPNT+A+ ++QSR++AQ WR+VA +FRLQ GE+R+ PL F P+R WR Sbjct: 270 LRIDLPQPNTVARATVQSRADAQSPWRDVADAVLFRLQRNGGEQRNPPLAFAPNPDRAWR 329 Query: 329 ILVDMRNGGLGSGLPQVSLGWRPAQLTFVARGSPPFRMGAGDAALAPVAQPTAELLMGAT 388 I+VDMRNGGLG G P V++GW PA LTFVARG+PPF +G G+AAL+ A LL+G Sbjct: 330 IVVDMRNGGLGGGQPAVAIGWHPAALTFVARGTPPFTLGVGNAALSSSAVSRDALLIGMA 389 Query: 389 PEMGNATLGARLPMAQES--AAAASASTRNIVLWVGLIIAVAALGAIAWRLAR 439 PE+ A +GA L ++ + +A + +TR VLW L+ AVA LG IAWRLAR Sbjct: 390 PEVRPARVGAALATSEAAPEPSADADATRRYVLWGALVAAVAVLGTIAWRLAR 442 >ref|YP_776453.1| hypothetical protein Bamb_4569 [Burkholderia ambifaria AMMD] gb|ABI90119.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 445 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 205/413 (49%), Positives = 262/413 (63%), Gaps = 8/413 (1%) Query: 31 YEVNLSGSGPYYRMRLPSEIYAASQRSDLGDVRIVNGAGERVPFSLEAATVPAPVKRVVP 90 + ++L GS YY++ +P +YAAS+R DLGDVRI NGAGE VP+SLEA A Sbjct: 32 FSLDLDGSAAYYQLTVPQAVYAASRRDDLGDVRIFNGAGEPVPYSLEAPAAAAVPPS--R 89 Query: 91 APVTWFAVPAANRAGGQPRLGVSIAPDGSLRAEVGAPAAPRGADESVLVDLGR-EASVSG 149 PV WF +P + G+ LGVS+APDGSLRA V APA + A + LVDL + V Sbjct: 90 TPVHWFPLPPSRTDDGRAPLGVSVAPDGSLRAAVTAPARMKHAAD--LVDLSHADGEVDA 147 Query: 150 LRIHLGGTQYQGRVQVESSADLAQWHSVAEADLLKASSNGKQLRQERVPLDGLRQRYLRL 209 + +H+ YQGRV VE+S DL W S+ LLK L QER+ L+G RYLRL Sbjct: 148 VLVHVSDDSYQGRVAVEASDDLRSWRSLGSTQLLKVGRGDDMLVQERIALEGAGSRYLRL 207 Query: 210 SWPDGVPEITAIDAETVVVEAVPGNDAPALR-WQAAAQVRTGSLAGEYLFESGGVYPAES 268 W DG P I +I+ ET +A + A R W+ A VR G GEYLF++ G YP + Sbjct: 208 DWLDGAPAIGSIEIETQPHDARTADAAAVPRQWRDAVHVRAGGAPGEYLFDTDGTYPVDR 267 Query: 269 VRIDLPQPNTIAKVSLQSRSEAQVSWREVATGSVFRLQGKSGEERSAPLQFHVTPERNWR 328 VRIDLPQPNT+A+ +LQSR++AQ WR+VA +FRLQGK E+R+ PL F P+R WR Sbjct: 268 VRIDLPQPNTVARATLQSRADAQAPWRDVAGAVLFRLQGKGAEQRNPPLAFAPNPDRAWR 327 Query: 329 ILVDMRNGGLGSGLPQVSLGWRPAQLTFVARGSPPFRMGAGDAALAPVAQPTAELLMGAT 388 I+VDMRNGGLG G P V++GW PA LTFVARG+PPF +G G+A+L A LL+G Sbjct: 328 IVVDMRNGGLGGGQPAVAVGWHPAALTFVARGTPPFTLGVGNASLPSSAVSRDALLVGMA 387 Query: 389 PEMGNATLGARL--PMAQESAAAASASTRNIVLWVGLIIAVAALGAIAWRLAR 439 PE+ A +GA L P + AA + +TR VLW L++AV LG IAWRLA+ Sbjct: 388 PEVRPARVGAALPAPAVEPERAADTDATRRYVLWGALVVAVGVLGTIAWRLAK 440 >ref|YP_838800.1| hypothetical protein Bcen2424_5174 [Burkholderia cenocepacia HI2424] ref|YP_001778725.1| hypothetical protein Bcenmc03_5105 [Burkholderia cenocepacia MC0-3] gb|ABK11907.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424] gb|ACA94235.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] Length = 452 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 206/417 (49%), Positives = 266/417 (63%), Gaps = 8/417 (1%) Query: 29 QWYEVNLSGSGPYYRMRLPSEIYAASQRSDLGDVRIVNGAGERVPFSLEAATVPAPVKRV 88 Q + ++L GS YY++ +P +YAAS+R DLGDVRI NGAGE VP+SL+A AP Sbjct: 30 QRFALDLDGSAAYYQLTVPQPVYAASRRDDLGDVRIFNGAGEPVPYSLDAPAAAAPAVPP 89 Query: 89 VPAPVTWFAVPAANRAGGQPRLGVSIAPDGSLRAEVGAPAAP-RGADESVLVDLGR-EAS 146 PV WF +P A G LGV++ PDG+LRA V P+ P GAD LVDL + S Sbjct: 90 SRTPVHWFPLPPARAEHGNAPLGVTVGPDGALRAAVATPSRPGHGAD---LVDLSHTDGS 146 Query: 147 VSGLRIHLGGTQYQGRVQVESSADLAQWHSVAEADLLKASSNGKQLRQERVPLDGLRQRY 206 L +H+ YQGRV VE+S DL W + LLK L QER+ LDG RY Sbjct: 147 TEALLVHVNDDSYQGRVAVEASDDLRSWRPLGSTQLLKVGRGNDMLVQERIALDGAAPRY 206 Query: 207 LRLSWPDGVPEITAIDAETVVVEAVPGNDAPALR-WQAAAQVRTGSLAGEYLFESGGVYP 265 LRL W DG P I +ID ET +A + A R W+ A ++R G+ GEYLF++ G YP Sbjct: 207 LRLDWLDGAPAIASIDVETHPRDARGTDTASVPRQWRDAVRIRAGAAPGEYLFDTDGAYP 266 Query: 266 AESVRIDLPQPNTIAKVSLQSRSEAQVSWREVATGSVFRLQGKSGEERSAPLQFHVTPER 325 + VRIDLPQPNT+A+ LQSR++AQ WR+VA +FRLQGK GE+R+ PL+F +R Sbjct: 267 VDRVRIDLPQPNTVARAMLQSRADAQAPWRDVAGAVLFRLQGKGGEQRNPPLEFIANTDR 326 Query: 326 NWRILVDMRNGGLGSGLPQVSLGWRPAQLTFVARGSPPFRMGAGDAALAPVAQPTAELLM 385 WRI+VDMRNGGLG G P +++GW PA LTFVARG+PPF +G GDA+L A LL+ Sbjct: 327 AWRIVVDMRNGGLGGGQPAIAIGWHPAALTFVARGTPPFTLGVGDASLVSSAVSRDALLV 386 Query: 386 GATPEMGNATLGARLPMAQESAAAASAST--RNIVLWVGLIIAVAALGAIAWRLARS 440 G PE+ A +GA LP + + AAA+ + R VLW L++AV LGAIAWR+A++ Sbjct: 387 GMAPEVRPARVGAALPASAVAPAAAADADAGRRYVLWGALVVAVGVLGAIAWRVAKA 443 >ref|YP_002235014.1| hypothetical protein BCAM2412 [Burkholderia cenocepacia J2315] emb|CAR56276.1| putative membrane protein [Burkholderia cenocepacia J2315] Length = 452 Score = 335 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 214/446 (47%), Positives = 278/446 (62%), Gaps = 11/446 (2%) Query: 1 MKSMLMSLCAGLLAFSAHAREVAPVAA--VQWYEVNLSGSGPYYRMRLPSEIYAASQRSD 58 MK + LLA S A + AP A Q + ++L GS YY++ +P +YAAS+R D Sbjct: 1 MKRLAALFGLSLLA-SFAAADGAPNAGRVTQRFALDLDGSAAYYQLTVPQPVYAASRRDD 59 Query: 59 LGDVRIVNGAGERVPFSLEAATVPAPVKRVVPAPVTWFAVPAANRAGGQPRLGVSIAPDG 118 LGDVR+ NGAGE VP+SL+A A PV WF +P G LGV++ PDG Sbjct: 60 LGDVRVFNGAGEPVPYSLDAPAAAASGVPPSRTPVHWFPLPPVRAEHGNAPLGVTVGPDG 119 Query: 119 SLRAEVGAPAAPR-GADESVLVDLGR-EASVSGLRIHLGGTQYQGRVQVESSADLAQWHS 176 +LRA V P+ R GAD LVDL + S+ L +H+ YQGRV VE+S DL W + Sbjct: 120 ALRAAVATPSDGRHGAD---LVDLSHADGSIDALLVHVDDDSYQGRVSVEASDDLRSWRA 176 Query: 177 VAEADLLKASSNGKQLRQERVPLDGLRQRYLRLSWPDGVPEITAIDAETVVVEAVPGNDA 236 + LLK L QER+ L+G RYLRL W DG P I +ID ET +A + A Sbjct: 177 LGSTQLLKVGRGNDMLVQERIALEGAAPRYLRLDWLDGAPAIASIDVETHPRDARGTDTA 236 Query: 237 PALR-WQAAAQVRTGSLAGEYLFESGGVYPAESVRIDLPQPNTIAKVSLQSRSEAQVSWR 295 R W+ A ++R G GEYLF++ G YP + VRIDLPQPNT+A+ +LQSR++AQ WR Sbjct: 237 SVPRQWRDAVRIRAGGAPGEYLFDTDGAYPVDRVRIDLPQPNTVARATLQSRADAQAPWR 296 Query: 296 EVATGSVFRLQGKSGEERSAPLQFHVTPERNWRILVDMRNGGLGSGLPQVSLGWRPAQLT 355 +VA+ +FRLQGK GE+R+ P +F +R WRI+VDMRNGGLG G P V++GW PA LT Sbjct: 297 DVASAVLFRLQGKGGEQRNPPFEFVANTDRAWRIVVDMRNGGLGGGQPAVAIGWHPAALT 356 Query: 356 FVARGSPPFRMGAGDAALAPVAQPTAELLMGATPEMGNATLGARLPMAQESAAAASAST- 414 FVARG+PPF +G GDA+L A LL+G PE+ A +GA LP++ + AAA+ + Sbjct: 357 FVARGTPPFTLGVGDASLVSSAVSRDALLVGMAPEVRPARVGAALPVSAVAPAAAADADA 416 Query: 415 -RNIVLWVGLIIAVAALGAIAWRLAR 439 R VLW L+IAV LGAIAWRLA+ Sbjct: 417 GRRYVLWGALVIAVGVLGAIAWRLAK 442