BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4970.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777214.1| transcription regulator protein [Herbaspiril... 561 e-158 ref|YP_004751395.1| putative transcription regulator protein, Ly... 439 e-121 ref|ZP_08276174.1| putative transcription regulator protein, Lys... 431 e-119 ref|YP_001352024.1| transcriptional regulator [Janthinobacterium... 426 e-117 ref|YP_001098638.1| LysR family transcriptional regulator [Hermi... 424 e-117 >ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65306.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 288/296 (97%), Positives = 293/296 (98%) Query: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLE+FVGERLFYRDGRSI Sbjct: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSI 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH Sbjct: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPM 180 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASP YLKTLPPM Sbjct: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPM 180 Query: 181 KSPTDLQHATLLRSALEPWQPWFEAAGLKDWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 KSP DL+ ATLLRSALEPWQPWFEAAGLKDWVEPS+GLRVDDLGLLLEAVRHGYG+GLTR Sbjct: 181 KSPADLKQATLLRSALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTR 240 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAFRNI 296 QHFAEELLARGEIVELFD+RLRTPPHAYYVVYERAVRERPEVDTFISWMQNAFRNI Sbjct: 241 QHFAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAFRNI 296 >ref|YP_004751395.1| putative transcription regulator protein, LysR family [Collimonas fungivorans Ter331] gb|AEK60572.1| putative transcription regulator protein, LysR family [Collimonas fungivorans Ter331] Length = 305 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 215/296 (72%), Positives = 255/296 (86%), Gaps = 1/296 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 + RLPPVHALSAFEAAARH SFA+AA+ELCITPSALSHRIRLLEDFVGERLF R+GR++ Sbjct: 11 LVNRLPPVHALSAFEAAARHRSFALAADELCITPSALSHRIRLLEDFVGERLFSREGRTV 70 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 LSEFG RYL+VVRSALRTLT+FP+P RNA VQP++K+ PPTFAR LL+P + F RH Sbjct: 71 TLSEFGHRYLEVVRSALRTLTEFPLPQRNAQVQPRVKITAPPTFARQLLIPHLHGFASRH 130 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPM 180 PEIVVE++LSVPLYDLSL+ESD+E+RFGAG YPN TEKLFEEP FAVASPGYLK P+ Sbjct: 131 PEIVVEIFLSVPLYDLSLTESDLEVRFGAGKYPNTTTEKLFEEPTFAVASPGYLKKAGPL 190 Query: 181 KSPTDLQHATLLRSALEPWQPWFEAAGLKDWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 P DL A+LLRSALEPWQPWF+AAGL DW EPSSGLR DDLGLLLE VRHG+G+GLTR Sbjct: 191 HQPADLCKASLLRSALEPWQPWFQAAGL-DWPEPSSGLRADDLGLLLELVRHGHGVGLTR 249 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAFRNI 296 +HFA++++A+GE+V+LFD+ L +PPHAYY+VY++ +ERPEV TFI WM++ F I Sbjct: 250 KHFAQQMIAQGEVVQLFDISLTSPPHAYYLVYQQKPQERPEVTTFIEWMKDTFSRI 305 >ref|ZP_08276174.1| putative transcription regulator protein, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF30357.1| putative transcription regulator protein, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 293 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 216/293 (73%), Positives = 248/293 (84%), Gaps = 1/293 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MA+RLPPVHALSAFEAAAR SFA+AAEELCITPSALSHRIRLLEDFVGERLF RD RS+ Sbjct: 1 MASRLPPVHALSAFEAAARFLSFALAAEELCITPSALSHRIRLLEDFVGERLFIRDSRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 LS+FGRRYL+VVRSALR L DFPMPHR QP++K+ +PPTFAR+LL+P++A F H Sbjct: 61 ALSDFGRRYLEVVRSALRALNDFPMPHRGVPAQPRLKITVPPTFARYLLVPKLAQFMALH 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPM 180 P I VEL+LSVPLYDLSLSESDVEIRFGAG Y NI+T KLFEEPAFAVASP YL ++ + Sbjct: 121 PHIAVELFLSVPLYDLSLSESDVEIRFGAGKYANIVTRKLFEEPAFAVASPAYLASIGGI 180 Query: 181 KSPTDLQHATLLRSALEPWQPWFEAAGLKDWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 +P DL+ A LLRSALEPWQPWFEAAGL DW EP +GLRVDDLGLLLE+V+HG+GIGLTR Sbjct: 181 ATPADLKKANLLRSALEPWQPWFEAAGL-DWPEPGTGLRVDDLGLLLESVKHGHGIGLTR 239 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAF 293 QHF ++A GE+V LFD+ LRTPPHAYY VYE++V ERPEV F+ W+ AF Sbjct: 240 QHFGAGMIATGEVVRLFDIELRTPPHAYYCVYEKSVIERPEVALFVDWLLTAF 292 >ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR88650.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 208/293 (70%), Positives = 250/293 (85%), Gaps = 1/293 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MA RLPPVHALSAFEAAARH SFAIAAEELCITPSA SHRIRLLE+FVGERLF RDGRS+ Sbjct: 1 MAIRLPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 L+EFGRRYLDVVR ALR+L DFP+PHR+ QP++K+ +PPTFAR+L +P +ADFT + Sbjct: 61 SLTEFGRRYLDVVRDALRSLADFPLPHRHPLAQPRVKITVPPTFARYLFLPHLADFTALY 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPM 180 P+I +E++LSVPLYD++LSE+D+EIRFGAG YP+ TEKLFEEP F V SP YL+ + + Sbjct: 121 PDITIEVFLSVPLYDMALSETDLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYLEKIGGL 180 Query: 181 KSPTDLQHATLLRSALEPWQPWFEAAGLKDWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 K+P DLQ A LLRSALEPWQ WFE AGL DW EP++GLR+DDLGLLLEAVRHGYG+ LTR Sbjct: 181 KTPADLQKAQLLRSALEPWQAWFEVAGL-DWPEPATGLRIDDLGLLLEAVRHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAF 293 +HFAEE++A GE+V LFD++L TP HAYY+VYE++VRERPEV F++WM F Sbjct: 240 KHFAEEMIANGEVVPLFDIQLTTPQHAYYMVYEQSVRERPEVVLFMNWMMERF 292 >ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL60509.1| putative transcription regulator protein, LysR family [Herminiimonas arsenicoxydans] Length = 299 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 209/293 (71%), Positives = 244/293 (83%), Gaps = 1/293 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MA+RLPPVHALSAFEAAARH SFA+AAEELCITPSA SHRIRLLEDFVGERLF RDGRS+ Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 L+EFGRRYLDVVR AL +L DFP+PHR A+ Q K+KV +PPTFAR+L +P + +F H Sbjct: 61 SLTEFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALH 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPM 180 PEI +E YLSVPLYD+SLSE+D+E+RFGAG YP+I+TEKLF EP F VASP YL+ + + Sbjct: 121 PEISIETYLSVPLYDMSLSETDIEVRFGAGKYPDIVTEKLFREPVFPVASPAYLEQIGKL 180 Query: 181 KSPTDLQHATLLRSALEPWQPWFEAAGLKDWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 P DLQ A LLRSALEPWQPWFE AGL DW EPS+GLR+DDLGLLLEAV+HGYG+ LTR Sbjct: 181 NVPADLQKAQLLRSALEPWQPWFEMAGL-DWQEPSTGLRIDDLGLLLEAVKHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFISWMQNAF 293 QHFA +++A GEIV LFD++L TP HAYY+VY+R VRERPEV + WM F Sbjct: 240 QHFAADMIASGEIVSLFDLQLTTPQHAYYLVYDRHVRERPEVALMLDWMMERF 292