BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4969.p (495 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777213.1| glycolate oxidase (FAD-linked subunit) oxido... 979 0.0 ref|YP_004751396.1| glycolate dehydrogenase [Collimonas fungivor... 866 0.0 ref|ZP_08273207.1| Glycolate dehydrogenase [Oxalobacteraceae bac... 832 0.0 ref|YP_001352025.1| glycolate oxidase (fad-linked subunit) oxido... 830 0.0 ref|YP_001098640.1| glycolate oxidase subunit glcD [Herminiimona... 822 0.0 >ref|YP_003777213.1| glycolate oxidase (FAD-linked subunit) oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65305.1| glycolate oxidase (FAD-linked subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 495 Score = 979 bits (2531), Expect = 0.0, Method: Composition-based stats. Identities = 488/495 (98%), Positives = 490/495 (98%) Query: 1 MNAPAQPSFAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPEN 60 MNAP QPSFAPARQREVVDALRRVVPAHCVL DEEDTRPYECDGLAAYRQLPMVVVLPEN Sbjct: 1 MNAPVQPSFAPARQREVVDALRRVVPAHCVLCDEEDTRPYECDGLAAYRQLPMVVVLPEN 60 Query: 61 EAQVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVV 120 EAQV+AIMK CHALQVQIVPRGAGTGLSGGA PIADGVVVSTAKFNQIL+MDKYSRTAVV Sbjct: 61 EAQVVAIMKTCHALQVQIVPRGAGTGLSGGATPIADGVVVSTAKFNQILQMDKYSRTAVV 120 Query: 121 QPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRM 180 QPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRM Sbjct: 121 QPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRM 180 Query: 181 VTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV 240 VTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV Sbjct: 181 VTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV 240 Query: 241 VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEE 300 VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEE Sbjct: 241 VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEE 300 Query: 301 EIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLA 360 EIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLA Sbjct: 301 EIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLA 360 Query: 361 QVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVG 420 QVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVG Sbjct: 361 QVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVG 420 Query: 421 GTITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM 480 GTITGEHGVGIEKINSMCVQFSPAERE FFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM Sbjct: 421 GTITGEHGVGIEKINSMCVQFSPAERETFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM 480 Query: 481 HVQRGQLRFPDLPRF 495 HVQRGQLRFPDLPRF Sbjct: 481 HVQRGQLRFPDLPRF 495 >ref|YP_004751396.1| glycolate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK60573.1| Glycolate dehydrogenase [Collimonas fungivorans Ter331] Length = 499 Score = 866 bits (2237), Expect = 0.0, Method: Composition-based stats. Identities = 431/493 (87%), Positives = 459/493 (93%) Query: 3 APAQPSFAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENEA 62 APA+ +F+PARQ++VV ALR ++PAH +L + EDTRPYECDGLAAYRQ PMVV LPENE Sbjct: 7 APAESTFSPARQQQVVSALRALLPAHALLSNIEDTRPYECDGLAAYRQTPMVVALPENEE 66 Query: 63 QVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQP 122 QV+AI+KAC L+V IVPRGAGTGLSGGAMPIADGVV+STAKF +I+K+D+Y+RTAVVQP Sbjct: 67 QVVAILKACRDLKVPIVPRGAGTGLSGGAMPIADGVVLSTAKFTRIVKLDQYARTAVVQP 126 Query: 123 GVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMVT 182 GVRNLAISEAAA HGLYYAPDPSSQIAC+IGGNVAENSGGVHCLKYGLTVHNVLRVRMVT Sbjct: 127 GVRNLAISEAAAAHGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVLRVRMVT 186 Query: 183 IEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVK 242 IEGEVVELG+GALDAPGLDLLAVFIGSEGMLGVVTEVTVKL+PKPQAARVIMASFDDVVK Sbjct: 187 IEGEVVELGNGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLIPKPQAARVIMASFDDVVK 246 Query: 243 GGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEEI 302 GNAVANVIAAGIIPAGLEMMD+TSSRMVEPFVKAGYDIDA AILLCESDGT EEVEEEI Sbjct: 247 SGNAVANVIAAGIIPAGLEMMDRTSSRMVEPFVKAGYDIDAAAILLCESDGTAEEVEEEI 306 Query: 303 GRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQV 362 GRM+ VLNASGAT I S SEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRK LAQV Sbjct: 307 GRMSAVLNASGATRIEVSTSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKNLAQV 366 Query: 363 LLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGGT 422 LLGI +ME KYGLRCANVFHAGDGNLHPLILFDAN+ EFHRAE FGAEILELCV VGGT Sbjct: 367 LLGIEQMENKYGLRCANVFHAGDGNLHPLILFDANVPGEFHRAEEFGAEILELCVAVGGT 426 Query: 423 ITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMHV 482 ITGEHGVGIEKINSMCVQFSP EREAFF +KRAFD AFLLNPDKAIPTL RCAEYGKMHV Sbjct: 427 ITGEHGVGIEKINSMCVQFSPLEREAFFNVKRAFDTAFLLNPDKAIPTLQRCAEYGKMHV 486 Query: 483 QRGQLRFPDLPRF 495 QRGQL+F +LPRF Sbjct: 487 QRGQLKFAELPRF 499 >ref|ZP_08273207.1| Glycolate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33326.1| Glycolate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] Length = 495 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 405/495 (81%), Positives = 450/495 (90%) Query: 1 MNAPAQPSFAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPEN 60 MNA A + RQR+VVDALRR++P CVLF++ED RPYECDGLAAYRQ+PMVV LP+ Sbjct: 1 MNAVADLPYTVTRQRDVVDALRRLLPERCVLFNDEDVRPYECDGLAAYRQMPMVVALPDT 60 Query: 61 EAQVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVV 120 EAQ++ I++ C +++ IVPRGAGTGLSGGA PIADG+V+STAK N+I+K+D SRTAVV Sbjct: 61 EAQLVQILQLCRDMKLPIVPRGAGTGLSGGATPIADGLVLSTAKLNRIIKVDPVSRTAVV 120 Query: 121 QPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRM 180 QPGVRNLAIS+AAAPH LYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNV+RVR+ Sbjct: 121 QPGVRNLAISDAAAPHNLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVMRVRI 180 Query: 181 VTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV 240 VTI+G++VELG+GALDAPGLDLLAVFIGSEGMLG+VTEVTV+L+PKPQ A VIMASFDDV Sbjct: 181 VTIDGDIVELGNGALDAPGLDLLAVFIGSEGMLGIVTEVTVRLIPKPQQACVIMASFDDV 240 Query: 241 VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEE 300 VKGGNAVA+VI AGIIPAGLEMMD+TSSRMVEPFVKAGYDIDA AILLCESDGT EEV+E Sbjct: 241 VKGGNAVADVIGAGIIPAGLEMMDRTSSRMVEPFVKAGYDIDAAAILLCESDGTPEEVQE 300 Query: 301 EIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLA 360 EI RMT +L ASGAT I+ S S+ ER+RFWSGRKNAFPAAGRISPDYYCMDGTIPRK+LA Sbjct: 301 EIARMTAILTASGATKISVSGSDEERMRFWSGRKNAFPAAGRISPDYYCMDGTIPRKRLA 360 Query: 361 QVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVG 420 +VLL I ME KYGLRCANVFHAGDGNLHPLILFDAN EFH+AE FGAEILELCVEVG Sbjct: 361 EVLLRIEAMEVKYGLRCANVFHAGDGNLHPLILFDANKPGEFHQAEAFGAEILELCVEVG 420 Query: 421 GTITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM 480 GTITGEHGVGIEKI+SMCVQ+SP EREAFF +KRAFD AFLLNPDKAIP+LHRCAEYGKM Sbjct: 421 GTITGEHGVGIEKIDSMCVQYSPQEREAFFAVKRAFDTAFLLNPDKAIPSLHRCAEYGKM 480 Query: 481 HVQRGQLRFPDLPRF 495 HVQRGQL+FPDLPRF Sbjct: 481 HVQRGQLKFPDLPRF 495 >ref|YP_001352025.1| glycolate oxidase (fad-linked subunit) oxidoreductase protein [Janthinobacterium sp. Marseille] gb|ABR88432.1| glycolate oxidase (fad-linked subunit) oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 495 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 410/495 (82%), Positives = 449/495 (90%) Query: 1 MNAPAQPSFAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPEN 60 MN + P F A QR VVDALR V+P CVLF+EEDTRPYECDGLAAY QLPMVVVLP+ Sbjct: 1 MNTTSAPPFTAAYQRTVVDALRAVLPERCVLFNEEDTRPYECDGLAAYAQLPMVVVLPDT 60 Query: 61 EAQVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVV 120 E QVIA +K C+AL+V IVPRGAGTGLSGGA+PIADG+V+STA+ N+I+K+D Y+RTAVV Sbjct: 61 EEQVIAALKVCNALKVPIVPRGAGTGLSGGALPIADGIVLSTARLNKIVKVDAYARTAVV 120 Query: 121 QPGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRM 180 QPGVRNLAISEA AP GLYYAPDPSSQIAC+IGGNVAENSGGVHCLKYGLTVHNV+RVR+ Sbjct: 121 QPGVRNLAISEAVAPLGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVMRVRV 180 Query: 181 VTIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDV 240 VTIEG+V+ELG+ ALDAPGLDLL+VFIGSEGMLG+VTEVTVKL+PKP+ ARVI+ASFDDV Sbjct: 181 VTIEGDVIELGNAALDAPGLDLLSVFIGSEGMLGMVTEVTVKLIPKPKLARVILASFDDV 240 Query: 241 VKGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEE 300 VKGGNAVA+VIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDG EEV+E Sbjct: 241 VKGGNAVASVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGIPEEVDE 300 Query: 301 EIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLA 360 EI RMT+VL SGATAIA SQ+EAERLRFWSGRKNAFPAAGRISPDYYC+DGTIPR+ LA Sbjct: 301 EIARMTEVLKHSGATAIAVSQNEAERLRFWSGRKNAFPAAGRISPDYYCIDGTIPRRSLA 360 Query: 361 QVLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVG 420 VLLGIA+ME KYGLRCANVFHAGDGNLHPLILFDAN EFHRAELFGAEILE+CV VG Sbjct: 361 DVLLGIAQMEVKYGLRCANVFHAGDGNLHPLILFDANQEGEFHRAELFGAEILEMCVAVG 420 Query: 421 GTITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKM 480 GTITGEHGVG+EKIN MCVQFS AE +AF +KRAFDP LLNP KAIPTL RCAEYGKM Sbjct: 421 GTITGEHGVGLEKINQMCVQFSRAEIDAFLAVKRAFDPVSLLNPTKAIPTLQRCAEYGKM 480 Query: 481 HVQRGQLRFPDLPRF 495 HV+RG L+FPDLPRF Sbjct: 481 HVKRGMLKFPDLPRF 495 >ref|YP_001098640.1| glycolate oxidase subunit glcD [Herminiimonas arsenicoxydans] Length = 512 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 405/494 (81%), Positives = 447/494 (90%), Gaps = 1/494 (0%) Query: 3 APAQPS-FAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPENE 61 APA + F A QR VVDALR V+P CVLF+EEDTRPYECDGLAAY QLPMVVVLP NE Sbjct: 19 APASTAPFTAAHQRTVVDALRAVLPEQCVLFNEEDTRPYECDGLAAYAQLPMVVVLPLNE 78 Query: 62 AQVIAIMKACHALQVQIVPRGAGTGLSGGAMPIADGVVVSTAKFNQILKMDKYSRTAVVQ 121 A VIA++K C L V++VPRGAGTGLSGGA+PIADG+V+STA+ N+I+K+D Y+RTAVVQ Sbjct: 79 AHVIAVLKVCRDLSVRVVPRGAGTGLSGGALPIADGIVLSTARLNKIVKVDAYARTAVVQ 138 Query: 122 PGVRNLAISEAAAPHGLYYAPDPSSQIACSIGGNVAENSGGVHCLKYGLTVHNVLRVRMV 181 PGVRNLAISEA A GLYYAPDPSSQIAC+IGGNVAENSGGVHCLKYGLTVHNV+RVR+V Sbjct: 139 PGVRNLAISEAVASLGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVMRVRVV 198 Query: 182 TIEGEVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVV 241 TIEG+V+ELG+ ALDAPGLDLL+VF+GSEGMLG+VTEVTVKL+PKP+ ARVI+ASFDDVV Sbjct: 199 TIEGDVIELGNAALDAPGLDLLSVFVGSEGMLGIVTEVTVKLIPKPKLARVILASFDDVV 258 Query: 242 KGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTVEEVEEE 301 KGGNAVA+VIAAGIIPAGLEMMDKTS+RMVEPFVKAGYDIDAEAILLCESDG EEVEEE Sbjct: 259 KGGNAVASVIAAGIIPAGLEMMDKTSTRMVEPFVKAGYDIDAEAILLCESDGIPEEVEEE 318 Query: 302 IGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKKLAQ 361 I RMT+VL SGATAIA SQ EAERL+FWSGRKNAFPAAGRISPDYYC+DGTIPR++LA+ Sbjct: 319 IARMTEVLKHSGATAIAVSQDEAERLKFWSGRKNAFPAAGRISPDYYCIDGTIPRRRLAE 378 Query: 362 VLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANIADEFHRAELFGAEILELCVEVGG 421 VL GIA+ME KYGLRCANVFHAGDGNLHPLILFDAN EFHRAELFGAEILE+CV GG Sbjct: 379 VLQGIAQMEVKYGLRCANVFHAGDGNLHPLILFDANQEGEFHRAELFGAEILEMCVAFGG 438 Query: 422 TITGEHGVGIEKINSMCVQFSPAEREAFFKLKRAFDPAFLLNPDKAIPTLHRCAEYGKMH 481 TITGEHGVG+EKIN MCVQFS AE +AF +KRAFDP LLNPDKAIPTL RCAEYGKMH Sbjct: 439 TITGEHGVGLEKINQMCVQFSRAEMDAFLSVKRAFDPLSLLNPDKAIPTLQRCAEYGKMH 498 Query: 482 VQRGQLRFPDLPRF 495 V+RG L+FPDLPRF Sbjct: 499 VKRGMLKFPDLPRF 512