BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4963.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777210.1| proton glutamate symport protein [Herbaspiri... 690 0.0 ref|YP_004153588.1| sodium:dicarboxylate symporter [Variovorax p... 551 e-155 ref|YP_004489035.1| sodium:dicarboxylate symporter [Delftia sp. ... 546 e-153 ref|YP_002943090.1| sodium:dicarboxylate symporter [Variovorax p... 535 e-150 ref|YP_623480.1| sodium:dicarboxylate symporter [Burkholderia ce... 531 e-149 >ref|YP_003777210.1| proton glutamate symport protein [Herbaspirillum seropedicae SmR1] gb|ADJ65302.1| proton glutamate symport protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 420/431 (97%), Positives = 428/431 (99%) Query: 1 MKKRIPQAAYIFAAMLLGILVGYLIFNHYDKGEAKELAGYISIASDLFLRLIKMVIAPLV 60 MKKRIPQAAYIFAAMLLGILVGYLIF+H DK +AKELAGYISIASDLFLRLIKMVIAPLV Sbjct: 1 MKKRIPQAAYIFAAMLLGILVGYLIFSHNDKAQAKELAGYISIASDLFLRLIKMVIAPLV 60 Query: 61 FSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPDAA 120 FSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPDAA Sbjct: 61 FSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPDAA 120 Query: 121 GAGLATSKFTVKEFFNHLVPKSIVEAMAQNEILQVVVFSMFFGIALAALGERGKHLLAVI 180 GAGLATSKFTVKEFFNHLVPKSIVEAMAQNE+LQVVVFSMFFGIALA+LGERGKHLLAVI Sbjct: 121 GAGLATSKFTVKEFFNHLVPKSIVEAMAQNEVLQVVVFSMFFGIALASLGERGKHLLAVI 180 Query: 181 DDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLDILVSFAVFMRDFYFSLVLLWVILI 240 DDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGL+ILVSFAVFMRDFYFSLVLLWVILI Sbjct: 181 DDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLEILVSFAVFMRDFYFSLVLLWVILI 240 Query: 241 AVGFVFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPMGY 300 AVGF+FLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPMGY Sbjct: 241 AVGFIFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPMGY 300 Query: 301 SFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAATL 360 SFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAATL Sbjct: 301 SFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAATL 360 Query: 361 HQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLLSEEEAARAEVEIE 420 HQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGL++EEEAARAEVEIE Sbjct: 361 HQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLMTEEEAARAEVEIE 420 Query: 421 QEAEATLHTEA 431 QEAEA LHTEA Sbjct: 421 QEAEAKLHTEA 431 >ref|YP_004153588.1| sodium:dicarboxylate symporter [Variovorax paradoxus EPS] gb|ADU35477.1| sodium:dicarboxylate symporter [Variovorax paradoxus EPS] Length = 435 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 316/429 (73%), Positives = 368/429 (85%), Gaps = 2/429 (0%) Query: 1 MKKRIPQAAYIFAAMLLGILVGYLIFNHY-DKGEAKELAGYISIASDLFLRLIKMVIAPL 59 MKK++P AA+I AM+LGI+VGY+IF + DK AKE+A Y+SI SD+FLRLIKM+I PL Sbjct: 1 MKKKLPMAAWILIAMVLGIIVGYMIFTSFPDKKAAKEIADYVSIVSDVFLRLIKMLIGPL 60 Query: 60 VFSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPD- 118 VFSTLVVGIAHMGDAKSVGR+FGK++ WF ASL+SL +G++MANLL+PG + LP PD Sbjct: 61 VFSTLVVGIAHMGDAKSVGRVFGKAIGWFLTASLISLVIGLVMANLLKPGENLGLPLPDI 120 Query: 119 AAGAGLATSKFTVKEFFNHLVPKSIVEAMAQNEILQVVVFSMFFGIALAALGERGKHLLA 178 A A LATSKFT K+F +H VPKS VEAMA NEILQ+VVFSMFFG+ALA+LG++ K L+A Sbjct: 121 GASANLATSKFTFKDFVSHTVPKSFVEAMANNEILQIVVFSMFFGVALASLGDKAKTLVA 180 Query: 179 VIDDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLDILVSFAVFMRDFYFSLVLLWVI 238 I++LSH MLKIT YVMK AP+AV AAMAATVAVNGL IL+ FAVFMRDFY L +LW + Sbjct: 181 AIEELSHAMLKITGYVMKLAPLAVLAAMAATVAVNGLGILIKFAVFMRDFYLGLFVLWAV 240 Query: 239 LIAVGFVFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPM 298 LI G +FL R+F LL LIKEAFLL+FATASSEAAYPK+L ALDRFGVKRKISSFVMPM Sbjct: 241 LILAGLLFLGPRVFKLLVLIKEAFLLSFATASSEAAYPKILQALDRFGVKRKISSFVMPM 300 Query: 299 GYSFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAA 358 GYSFNLDGSM+YCTFA LFIAQAY IHMPISTQ+TM+L+LMLTSKG+AGVPRASLVVIAA Sbjct: 301 GYSFNLDGSMMYCTFAVLFIAQAYDIHMPISTQVTMLLILMLTSKGMAGVPRASLVVIAA 360 Query: 359 TLHQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLLSEEEAARAEVE 418 TL+ F+IPEAGLL+ILG+DTFLDMGRSATNAVGNSIA+AVVAKWEG LLSE +A Sbjct: 361 TLNHFDIPEAGLLLILGVDTFLDMGRSATNAVGNSIATAVVAKWEGELLSEGDAEVNAKA 420 Query: 419 IEQEAEATL 427 +++EA ATL Sbjct: 421 LDEEANATL 429 >ref|YP_004489035.1| sodium:dicarboxylate symporter [Delftia sp. Cs1-4] gb|AEF90680.1| sodium:dicarboxylate symporter [Delftia sp. Cs1-4] Length = 438 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 314/429 (73%), Positives = 366/429 (85%), Gaps = 2/429 (0%) Query: 1 MKKRIPQAAYIFAAMLLGILVGYLIF-NHYDKGEAKELAGYISIASDLFLRLIKMVIAPL 59 M +R+P A +I AM+LGI++GY++F N DK A ++AGYISI SD+FLRLIKM+I PL Sbjct: 1 MTRRLPPAIWILVAMVLGIVIGYMVFINFPDKKAAAQIAGYISIMSDVFLRLIKMLIGPL 60 Query: 60 VFSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPD- 118 VFSTLVVGIAHMGDA SVGR+F K++ WF ASLVSL +G+++ANLLQPG + LP PD Sbjct: 61 VFSTLVVGIAHMGDAASVGRVFLKAMGWFVTASLVSLVMGLVLANLLQPGHNLGLPLPDI 120 Query: 119 AAGAGLATSKFTVKEFFNHLVPKSIVEAMAQNEILQVVVFSMFFGIALAALGERGKHLLA 178 A A LAT+KFT+K+F +HLVPKS EAMA NEILQ+VVFSMFFG+ALAALGE+G+ L+A Sbjct: 121 GASANLATAKFTLKDFVSHLVPKSFAEAMANNEILQIVVFSMFFGVALAALGEKGRTLVA 180 Query: 179 VIDDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLDILVSFAVFMRDFYFSLVLLWVI 238 ID+LSH MLKIT YVMK AP+AV AAMAATV+VNGL+IL+ FAVFM DFY L LLW + Sbjct: 181 AIDELSHVMLKITGYVMKLAPLAVLAAMAATVSVNGLEILLKFAVFMGDFYLGLFLLWGV 240 Query: 239 LIAVGFVFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPM 298 L+ GF+FL RIF LL LIKEAF+L+FATASSEAAYPK+LDALDRFGVKRKISSFVMPM Sbjct: 241 LVIAGFLFLGPRIFRLLVLIKEAFMLSFATASSEAAYPKILDALDRFGVKRKISSFVMPM 300 Query: 299 GYSFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAA 358 GYSFNLDGSM+YCTFA LFIAQAY IH+ + TQITM+L+LMLTSKG+AGVPRASLVVIAA Sbjct: 301 GYSFNLDGSMMYCTFAVLFIAQAYDIHLSLGTQITMLLILMLTSKGMAGVPRASLVVIAA 360 Query: 359 TLHQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLLSEEEAARAEVE 418 TL+QFNIPEAGLL+ILG+DTFLDMGRSATNAVGNSIA+AVVAKWEG LL E EAA Sbjct: 361 TLNQFNIPEAGLLLILGVDTFLDMGRSATNAVGNSIATAVVAKWEGDLLPETEAAANAAR 420 Query: 419 IEQEAEATL 427 ++ EA ATL Sbjct: 421 LDSEARATL 429 >ref|YP_002943090.1| sodium:dicarboxylate symporter [Variovorax paradoxus S110] gb|ACS17824.1| sodium:dicarboxylate symporter [Variovorax paradoxus S110] Length = 435 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 315/429 (73%), Positives = 368/429 (85%), Gaps = 2/429 (0%) Query: 1 MKKRIPQAAYIFAAMLLGILVGYLIFNHY-DKGEAKELAGYISIASDLFLRLIKMVIAPL 59 MK+++P AA+I AM+LGILVGY+IF + DK A ++AGY+SI SD+FLRLIKM+I PL Sbjct: 1 MKRKLPAAAWILIAMVLGILVGYMIFTSFPDKKAAAQIAGYVSIVSDVFLRLIKMLIGPL 60 Query: 60 VFSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPD- 118 VFSTLVVGIAHMGDAKSVGR+FGKSL WF ASL+SL +G++MAN+L+PG + LP PD Sbjct: 61 VFSTLVVGIAHMGDAKSVGRVFGKSLGWFLTASLISLVIGLVMANVLKPGENLGLPLPDI 120 Query: 119 AAGAGLATSKFTVKEFFNHLVPKSIVEAMAQNEILQVVVFSMFFGIALAALGERGKHLLA 178 A A LAT+KFT+K+F +H+VPKS EAMA NEILQ+VVFSMFFG+ALA+LG++ + L+A Sbjct: 121 GASANLATAKFTLKDFVSHMVPKSFAEAMANNEILQIVVFSMFFGVALASLGDKARTLVA 180 Query: 179 VIDDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLDILVSFAVFMRDFYFSLVLLWVI 238 ID+LSH MLKIT YVMK AP+AV AAMAATVA NGL IL+ FAVFM DFY L +LW + Sbjct: 181 AIDELSHAMLKITGYVMKLAPLAVMAAMAATVATNGLGILLKFAVFMGDFYLGLFVLWGV 240 Query: 239 LIAVGFVFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPM 298 L+ GF FL R+F LLALIKEAFLL+FATASSEAAYPK+L ALDRFGVKRKISSFVMPM Sbjct: 241 LVFAGFSFLGPRVFKLLALIKEAFLLSFATASSEAAYPKILQALDRFGVKRKISSFVMPM 300 Query: 299 GYSFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAA 358 GYSFNLDGSM+YCTFA LFIAQAY IHMPISTQITM+L+LMLTSKG+AGVPRASLVVIAA Sbjct: 301 GYSFNLDGSMMYCTFAVLFIAQAYNIHMPISTQITMLLILMLTSKGMAGVPRASLVVIAA 360 Query: 359 TLHQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLLSEEEAARAEVE 418 TL+ F+IPEAGLL+ILG+DTFLDMGRSATNAVGNSIA+AVVAKWEG LLSE +AA Sbjct: 361 TLNHFDIPEAGLLLILGVDTFLDMGRSATNAVGNSIATAVVAKWEGELLSESDAAANART 420 Query: 419 IEQEAEATL 427 ++ EA ATL Sbjct: 421 LDAEASATL 429 >ref|YP_623480.1| sodium:dicarboxylate symporter [Burkholderia cenocepacia AU 1054] ref|YP_838380.1| sodium:dicarboxylate symporter [Burkholderia cenocepacia HI2424] gb|ABF78507.1| sodium:dicarboxylate symporter [Burkholderia cenocepacia AU 1054] gb|ABK11487.1| sodium:dicarboxylate symporter [Burkholderia cenocepacia HI2424] Length = 442 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 319/426 (74%), Positives = 362/426 (84%), Gaps = 2/426 (0%) Query: 1 MKKRIPQAAYIFAAMLLGILVGYLIFNHY-DKGEAKELAGYISIASDLFLRLIKMVIAPL 59 M KR+ A +I AM GILVGYLI+ DK A E+AGYIS+ SD+FLRLIKMVI PL Sbjct: 1 MNKRMSAAGWILLAMAAGILVGYLIYTQLPDKQAATEVAGYISLVSDVFLRLIKMVIGPL 60 Query: 60 VFSTLVVGIAHMGDAKSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSPD- 118 VFSTLVVGIAHMGDA SVGR+F K+L WF ASL+SL LG++MANLL+PG + LP PD Sbjct: 61 VFSTLVVGIAHMGDASSVGRVFVKALGWFVTASLISLLLGLLMANLLRPGENLGLPLPDI 120 Query: 119 AAGAGLATSKFTVKEFFNHLVPKSIVEAMAQNEILQVVVFSMFFGIALAALGERGKHLLA 178 A A LATSKFT+K+F H+VPKSI EAMA NEILQ+VVFSMFFG+ALAALGERGK L+A Sbjct: 121 GASAHLATSKFTLKDFVGHMVPKSIAEAMANNEILQIVVFSMFFGVALAALGERGKILVA 180 Query: 179 VIDDLSHTMLKITVYVMKFAPVAVFAAMAATVAVNGLDILVSFAVFMRDFYFSLVLLWVI 238 ID L+H MLKIT YVMK AP+AV AAMA+TVAVNGL IL+ FAVFM DFY SLVLLW Sbjct: 181 AIDQLAHVMLKITGYVMKLAPLAVMAAMASTVAVNGLSILLKFAVFMGDFYASLVLLWAT 240 Query: 239 LIAVGFVFLKKRIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMPM 298 L+A G +FL +R+F LLALIKEAF+L+FATASSEAAYPK+LDALDRFGV+RKISSFVMPM Sbjct: 241 LVAAGLLFLGRRVFRLLALIKEAFMLSFATASSEAAYPKILDALDRFGVRRKISSFVMPM 300 Query: 299 GYSFNLDGSMIYCTFATLFIAQAYGIHMPISTQITMMLVLMLTSKGIAGVPRASLVVIAA 358 GYSFNLDGSM+YCTFATLFIAQAY IH+ + TQITM+L+LMLTSKG+AGVPRASLVVIAA Sbjct: 301 GYSFNLDGSMMYCTFATLFIAQAYDIHLSLGTQITMLLILMLTSKGMAGVPRASLVVIAA 360 Query: 359 TLHQFNIPEAGLLVILGIDTFLDMGRSATNAVGNSIASAVVAKWEGGLLSEEEAARAEVE 418 TLHQFNIPEAGLL+ILG+DTFLDMGRSATNAVGNSIASAVVAKWEG L+SE EA+ Sbjct: 361 TLHQFNIPEAGLLLILGVDTFLDMGRSATNAVGNSIASAVVAKWEGELMSESEASAHAAH 420 Query: 419 IEQEAE 424 ++ E E Sbjct: 421 LDAELE 426