BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4962.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777209.1| hypothetical protein Hsero_3823 [Herbaspiril...   273   6e-72
ref|YP_003911153.1| hypothetical protein BC1003_5953 [Burkholder...   119   2e-25
ref|YP_001527454.1| hypothetical protein AZC_4538 [Azorhizobium ...   115   3e-24
ref|YP_002498316.1| hypothetical protein Mnod_3072 [Methylobacte...   107   9e-22
ref|ZP_00959606.1| hypothetical protein ISM_07225 [Roseovarius n...   106   1e-21

>ref|YP_003777209.1| hypothetical protein Hsero_3823 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65301.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  273 bits (698), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 137/152 (90%), Positives = 142/152 (93%)

Query: 1   MMMTLPAHDSDSLDDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMQTAIVRGAI 60
           MMMTLPAHDSD LDDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGM  AIVRGAI
Sbjct: 1   MMMTLPAHDSDFLDDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMDKAIVRGAI 60

Query: 61  GSLIDAHLEYATPTGWREMEINGPGVEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFA 120
           GSLIDAHL+YATPTG REME+NGPGVEILNVFGEIGFA G   AHPLQGVVAD +G+IFA
Sbjct: 61  GSLIDAHLQYATPTGLREMEVNGPGVEILNVFGEIGFADGPASAHPLQGVVADTEGRIFA 120

Query: 121 GRFVRGANLSFITIEITLQEWIAVRQSEALPA 152
           GRFVRGANLSFITIEITLQEWIAV+QSE LPA
Sbjct: 121 GRFVRGANLSFITIEITLQEWIAVKQSEPLPA 152


>ref|YP_003911153.1| hypothetical protein BC1003_5953 [Burkholderia sp. CCGE1003]
 gb|ADN61862.1| protein of unknown function DUF296 [Burkholderia sp. CCGE1003]
          Length = 159

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/129 (47%), Positives = 84/129 (65%), Gaps = 3/129 (2%)

Query: 17  IHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMQTAIVRGAIGSLIDAHLEYATPTGW 76
           + +E G  G+ V+ARLKPN+D+ E++E LC Q+G+  A+VR A+GSLID HL        
Sbjct: 21  VRLEAGHYGRTVIARLKPNEDIVEALERLCGQYGIGRAVVRSAVGSLIDGHLASGAGAAS 80

Query: 77  REMEINGPGVEILNVFGEIG---FAGGKPHAHPLQGVVADVDGKIFAGRFVRGANLSFIT 133
               + GPGVEI+ +FGE+      G    A  L  +++  D ++FAGR VRG NLSFIT
Sbjct: 81  TVQVVKGPGVEIVGLFGEVSGVPVDGRALGASGLTAILSGTDSQVFAGRVVRGMNLSFIT 140

Query: 134 IEITLQEWI 142
           +E+TLQEWI
Sbjct: 141 VEVTLQEWI 149


>ref|YP_001527454.1| hypothetical protein AZC_4538 [Azorhizobium caulinodans ORS 571]
 dbj|BAF90536.1| hypothetical protein AZC_4538 [Azorhizobium caulinodans ORS 571]
          Length = 141

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 5/140 (3%)

Query: 5   LPAHDSDS-LDDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMQTAIVRGAIGSL 63
           +PA   D+   D +  E G+ G+++ AR++PN+DL  ++E LC QHG   A+VRG++GSL
Sbjct: 1   MPADPQDTPASDPLLPESGRTGRILYARVRPNEDLVHTIEKLCLQHGFSDAVVRGSLGSL 60

Query: 64  IDAHLEYATPTGWREMEINGPGVEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFAGRF 123
               LE  T TG R +E+ GP VE+L + GE+   GG   A  L G VAD  G+IFAGRF
Sbjct: 61  SQCCLE--THTGAR-IEVPGPAVEMLTLMGEVRSNGGALEAR-LSGTVADPQGRIFAGRF 116

Query: 124 VRGANLSFITIEITLQEWIA 143
             G N   IT EITL+EW+A
Sbjct: 117 AAGRNPVCITFEITLEEWLA 136


>ref|YP_002498316.1| hypothetical protein Mnod_3072 [Methylobacterium nodulans ORS 2060]
 gb|ACL58013.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 130

 Score =  107 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 81/130 (62%), Gaps = 3/130 (2%)

Query: 13  LDDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMQTAIVRGAIGSLIDAHLEYAT 72
           + D I VE+G +G++  AR+ PN+DL   VE +C   G + A VRGA+GSL+DA L   T
Sbjct: 1   MSDTIVVEKGSMGRVAYARIGPNEDLVLGVEKMCLAEGFRNAFVRGALGSLVDACL--GT 58

Query: 73  PTGWREMEINGPGVEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFAGRFVRGANLSFI 132
            +G   +EI GP VEI+++ GE+           L GVVAD DG ++ G FV GAN   +
Sbjct: 59  LSG-EYIEIKGPAVEIVSLAGEVRSTSDGSLRAALTGVVADTDGNVYGGPFVAGANPICM 117

Query: 133 TIEITLQEWI 142
           T E+TL+EW+
Sbjct: 118 TFEVTLEEWL 127


>ref|ZP_00959606.1| hypothetical protein ISM_07225 [Roseovarius nubinhibens ISM]
 gb|EAP78068.1| hypothetical protein ISM_07225 [Roseovarius nubinhibens ISM]
          Length = 131

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 19  VEQGQLGKLVMARLKPNQDLTESVEALCRQHGMQTAIVRGAIGSLIDAHLEYATPTGWRE 78
           VE G +G++  AR+ PN+DL + +E  C   G++ A VRGA+GSL+DA L   T +    
Sbjct: 4   VEHGAMGRVAYARIAPNEDLVQGIEKTCLAEGIRNAFVRGALGSLVDATL--VTKSDGTR 61

Query: 79  MEINGPGVEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFAGRFVRGANLSFITIEITL 138
           + +NGP VE++++ GE+        A  L GVVAD DG++F G FV G N   +T E+TL
Sbjct: 62  VLVNGPAVEVVSIAGEVRAGPDNTIAAALSGVVADTDGQVFGGFFVPGGNTVCMTFEVTL 121

Query: 139 QEWIAVRQS 147
           +EW+    S
Sbjct: 122 EEWLPADAS 130