BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4960.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777208.1| hypothetical protein Hsero_3822 [Herbaspiril... 342 2e-92 ref|YP_003911152.1| hypothetical protein BC1003_5952 [Burkholder... 150 8e-35 ref|YP_001791404.1| hypothetical protein Lcho_2374 [Leptothrix c... 67 1e-09 ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspiril... 65 5e-09 ref|YP_001527453.1| hypothetical protein AZC_4537 [Azorhizobium ... 64 1e-08 >ref|YP_003777208.1| hypothetical protein Hsero_3822 [Herbaspirillum seropedicae SmR1] gb|ADJ65300.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 179 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 174/178 (97%), Positives = 175/178 (98%) Query: 12 ASAGFLAVRKFLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGV 71 ASAGFL VRKFLHAGQPSYPRTLDLEADPAEELRITLQ GT VGPALRRVLARYGQRGGV Sbjct: 2 ASAGFLEVRKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARYGQRGGV 61 Query: 72 GRLCGGSARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH 131 GRLCGG+ARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH Sbjct: 62 GRLCGGTARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH 121 Query: 132 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 189 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME Sbjct: 122 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 179 >ref|YP_003911152.1| hypothetical protein BC1003_5952 [Burkholderia sp. CCGE1003] gb|ADN61861.1| hypothetical protein BC1003_5952 [Burkholderia sp. CCGE1003] Length = 177 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 75/165 (45%), Positives = 99/165 (60%) Query: 22 FLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGVGRLCGGSARR 81 F H G +YPR L ELR+ + G G LR ++ R+G G GR+C GSAR Sbjct: 8 FRHPGAAAYPRVLASVVRRPRELRVEIPSGRNAGTVLRELMQRHGFHGASGRICSGSARA 67 Query: 82 LHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDGTL 141 L YH + + + RPY YG P + G +S + GA+TIGQ G V LHCH F+ GDG L Sbjct: 68 LQYHVVVKAAEGERPYVYGNPTIESGEVSLLHGAVTIGQGRGGSVALHCHGAFVGGDGRL 127 Query: 142 HGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPT 186 HGGH++LD +EVG + L+LRLC F+R F DEET ++L P+ Sbjct: 128 HGGHVVLDRLEVGSEALVLRLCAFARGGFTQYVDEETRYTLFGPS 172 >ref|YP_001791404.1| hypothetical protein Lcho_2374 [Leptothrix cholodnii SP-6] gb|ACB34639.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 289 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 46 ITLQPGTPVGPALRRVLARYGQRGGVGRLCGGSARRLHY------HRIEQTGDASRPYDY 99 + L+ G + AL +A R GV RL GG Y E S +D Sbjct: 26 VQLRSGVTLLDALHEAMAALNARSGVARLHGGRFFPFAYAMPALSRTPEHAVYFSDRFDA 85 Query: 100 GPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDGTLHGGHLLLDTVEVGDDPLI 159 P +SF +T G ADG+ LHCH+ + DG H GH+L + + + P Sbjct: 86 AEP------VSFEAATVTFGVRADGRPWLHCHADWRSADGQRHCGHVLPEDAVLIEAPAR 139 Query: 160 LRLCLFSRSAFVVNSDEETHFSLLHPTPME 189 L +AF V +D+ET FSL P PM+ Sbjct: 140 AELWALHGAAFTVVADDETRFSLFKPLPMD 169 >ref|YP_003775876.1| hypothetical protein Hsero_2469 [Herbaspirillum seropedicae SmR1] gb|ADJ63968.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 3/167 (1%) Query: 20 RKFLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGVGRLCGGSA 79 R H G P R + L A PA +L TL+ G + A+ L+R G GG R + Sbjct: 9 RTVRHPGAPDPQRIVSL-AGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTVRFGQLAI 67 Query: 80 RRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDG 139 LH+ D Y PH +E T G+ DG+ +HCH+ + D G Sbjct: 68 AELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRK-DGEPFVHCHAVWRDRQG 126 Query: 140 TLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPT 186 GGHL+++ VG D L + D ET+F+L +PT Sbjct: 127 QRQGGHLMMEKTLVGADTPAQAWGLHD-ATMATRYDPETNFTLFYPT 172 >ref|YP_001527453.1| hypothetical protein AZC_4537 [Azorhizobium caulinodans ORS 571] dbj|BAF90535.1| hypothetical protein AZC_4537 [Azorhizobium caulinodans ORS 571] Length = 188 Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 71/171 (41%) Query: 15 GFLAVRKFLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGVGRL 74 G + VR H G + R L + A R +L PG + + + L Sbjct: 5 GEVPVRLLRHPGPMAARRWDSLSCEKARAFRFSLIPGRSLYEGIVNAMTAAKVSAAALTL 64 Query: 75 CGGSARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGF 134 GG+ R+ Y + Y P + G I + + T+G + +G ++HCH+ Sbjct: 65 TGGTFARVDYCLAAPRPGRPQVAGYTDPERMGGPIGLIGASATLGLDVNGAPMVHCHALL 124 Query: 135 IDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHP 185 D +G L GGH++ DT VG P ++ F A D ET SL HP Sbjct: 125 SDAEGQLFGGHIIPDTSMVGAVPPVVFARAFEGEAIRQRYDPETIMSLFHP 175