BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4956.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system ... 617 e-174 ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp ... 497 e-138 ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit... 476 e-132 ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit ... 474 e-131 ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rh... 455 e-126 >ref|YP_003777204.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65296.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 320/345 (92%), Positives = 330/345 (95%), Gaps = 1/345 (0%) Query: 1 MEQSTGKITRRHFLKTASVASAAAATGLVSTQAFAAAEFTLKYANNLPATHPMNLRAKEM 60 M QSTGKITRR+FLKTASVASAAAATGLVST A AA EFT KYANNLP THPMN RAKEM Sbjct: 1 MAQSTGKITRRNFLKTASVASAAAATGLVSTSAHAA-EFTFKYANNLPVTHPMNARAKEM 59 Query: 61 AAKIATESKGRIELQLYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGIG 120 AA IA +SKGRIELQLYPNNQLG DTD L QVR+GA+DFFTLSPLILGTLVPAAQISGIG Sbjct: 60 AAAIAEQSKGRIELQLYPNNQLGTDTDMLSQVRAGAIDFFTLSPLILGTLVPAAQISGIG 119 Query: 121 FAFKDYSQVWPAMDGELGAHVRKQIEAKSTLFAFEKIWDNGYRQITNSTKPIKAADDLKG 180 FAFKDYSQVWPAMDGELGAHVRKQIEA+STLFAFEKIWDNGYRQITNSTKPIK A+DLKG Sbjct: 120 FAFKDYSQVWPAMDGELGAHVRKQIEARSTLFAFEKIWDNGYRQITNSTKPIKVAEDLKG 179 Query: 181 MKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKY 240 MKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKY Sbjct: 180 MKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKY 239 Query: 241 CSITNHMWDGFWFLGNKKSFERLPKDLQDLMARLINEAAMNQRADVRKLNDSLVDEMKGK 300 CSITNHMWDGFWFLGNKKSFERLPKDLQ+LM R+INEA +NQRADVRKLNDSLVDEMKGK Sbjct: 240 CSITNHMWDGFWFLGNKKSFERLPKDLQELMTRIINEAGVNQRADVRKLNDSLVDEMKGK 299 Query: 301 GLAFNNADADSFRAKLRSAGFYAEWKKKFGDEPWALLEKYTGKLA 345 GLAFNNADADSFRAKLR+AGFYAEWKKKFGDEPWALLEKYTGKLA Sbjct: 300 GLAFNNADADSFRAKLRAAGFYAEWKKKFGDEPWALLEKYTGKLA 344 >ref|YP_001791402.1| TRAP dicarboxylate transporter subunit Dctp [Leptothrix cholodnii SP-6] gb|ACB34637.1| TRAP dicarboxylate transporter, DctP subunit [Leptothrix cholodnii SP-6] Length = 338 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 241/340 (70%), Positives = 290/340 (85%), Gaps = 6/340 (1%) Query: 7 KITRRHFLKTASVASAAAATGLVSTQAFA--AAEFTLKYANNLPATHPMNLRAKEMAAKI 64 +ITRR L + A A V+T A A AEFTLKYANNLP THPMN+RA EMAA I Sbjct: 2 QITRRTLL----AGTGALALPGVATHALAQNKAEFTLKYANNLPITHPMNVRATEMAAAI 57 Query: 65 ATESKGRIELQLYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGIGFAFK 124 ESKGR++L+++P++QLG DTD L Q+RSGA+D+FTLSPLILGTLVP+AQISG+GFAFK Sbjct: 58 LAESKGRVDLKVFPSSQLGTDTDMLSQIRSGAIDYFTLSPLILGTLVPSAQISGVGFAFK 117 Query: 125 DYSQVWPAMDGELGAHVRKQIEAKSTLFAFEKIWDNGYRQITNSTKPIKAADDLKGMKLR 184 DY+QVW AMDG+LGAHVRK+I A+ST+FAF+KIWDNGYRQ+T+S + I +DLKGMK+R Sbjct: 118 DYNQVWAAMDGDLGAHVRKEIAARSTMFAFDKIWDNGYRQMTSSARAITKPEDLKGMKMR 177 Query: 185 VPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSIT 244 VPPSP W SMFKAF+A+P +INFAEVY+ALQTKIV+GQENP+AII+TAKL+EVQ++CSIT Sbjct: 178 VPPSPFWVSMFKAFEASPATINFAEVYTALQTKIVDGQENPLAIIATAKLFEVQQFCSIT 237 Query: 245 NHMWDGFWFLGNKKSFERLPKDLQDLMARLINEAAMNQRADVRKLNDSLVDEMKGKGLAF 304 NHMWDGFWFL NKKSFERLP DLQ+++ R +N+A +NQR DVRKLNDSL+ E+K KG+A Sbjct: 238 NHMWDGFWFLANKKSFERLPADLQEIVTRNVNKAGLNQRDDVRKLNDSLLGELKAKGMAI 297 Query: 305 NNADADSFRAKLRSAGFYAEWKKKFGDEPWALLEKYTGKL 344 N DA+ FRAKLR+AGFYAEW KKFGDE WA+LEKYTGKL Sbjct: 298 NTTDAELFRAKLRAAGFYAEWHKKFGDEAWAVLEKYTGKL 337 >ref|YP_001156317.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34753.1| TRAP dicarboxylate transporter, DctP subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 225/338 (66%), Positives = 277/338 (81%), Gaps = 5/338 (1%) Query: 9 TRRHFLKTASVASAAAATGLVSTQAFA-AAEFTLKYANNLPATHPMNLRAKEMAAKIATE 67 TRR F+K A +A A LV+ AFA AEF +K+ +NLPATHP+N+ A +MA+KI E Sbjct: 4 TRRDFMKHAGIA----ALPLVAGNAFAQTAEFNMKFGSNLPATHPLNIHAYKMASKIKVE 59 Query: 68 SKGRIELQLYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGIGFAFKDYS 127 +KGR+++Q++P NQLGNDTD L Q+RSGA+DF TLSPLILG+LVP AQI+G+GFAFKDY Sbjct: 60 TKGRVDIQVFPYNQLGNDTDMLSQLRSGALDFMTLSPLILGSLVPQAQINGVGFAFKDYK 119 Query: 128 QVWPAMDGELGAHVRKQIEAKSTLFAFEKIWDNGYRQITNSTKPIKAADDLKGMKLRVPP 187 QVW AMDGELGA+VR+QI T+FAF+KIWDNGYR++TNS +PI DDLKG+KLR PP Sbjct: 120 QVWAAMDGELGAYVRRQIANTGTIFAFDKIWDNGYREVTNSVRPINKPDDLKGIKLRTPP 179 Query: 188 SPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSITNHM 247 P+W S+FKA AAPT +NFAEVYSALQ+K+V+GQENP+AII TAKLYEVQKYCS+TNHM Sbjct: 180 GPMWVSLFKALGAAPTPLNFAEVYSALQSKVVDGQENPLAIIYTAKLYEVQKYCSMTNHM 239 Query: 248 WDGFWFLGNKKSFERLPKDLQDLMARLINEAAMNQRADVRKLNDSLVDEMKGKGLAFNNA 307 WDG+WF+GNKK FE+LP DLQ ++ R + E+A+ QRADVRK+ND L E+K KG+A N+ Sbjct: 240 WDGYWFMGNKKLFEQLPPDLQVIVTRNVAESAVLQRADVRKMNDGLQSELKAKGMAVNDT 299 Query: 308 DADSFRAKLRSAGFYAEWKKKFGDEPWALLEKYTGKLA 345 + D FR KLR AGFY+EWK KFGDE W+LLEKY GKLA Sbjct: 300 NPDPFREKLRQAGFYSEWKAKFGDEAWSLLEKYVGKLA 337 >ref|YP_003911144.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia sp. CCGE1003] gb|ADN61853.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia sp. CCGE1003] Length = 339 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 235/337 (69%), Positives = 284/337 (84%), Gaps = 2/337 (0%) Query: 9 TRRHFLKTASVASAAAATGLVSTQAFAAAEFTLKYANNLPATHPMNLRAKEMAAKIATES 68 +RR FLK AS+A+AA+ GL A AA EFTLKYANNLPATHPMN+RAK+ AA+IA+ES Sbjct: 5 SRRDFLKCASLAAAASFAGLHGRSAHAA-EFTLKYANNLPATHPMNVRAKQAAARIASES 63 Query: 69 KGRIELQLYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGIGFAFKDYSQ 128 KGRI+ Q+Y NNQLG+DTD L QVRSGA+D+FTLSPLILGTLVPAAQI+G+GFAFKDY Q Sbjct: 64 KGRIDFQVYSNNQLGSDTDMLSQVRSGAIDYFTLSPLILGTLVPAAQITGVGFAFKDYDQ 123 Query: 129 VWPAMDGELGAHVRKQIEAKSTLFAFEKIWDNGYRQITNSTKPIKAADDLKGMKLRVPPS 188 VW A+DG LGA VR+QI AK+++FAFEKIWDNGYRQ T S + I DDLKG++LRVP S Sbjct: 124 VWGALDGALGARVREQI-AKTSVFAFEKIWDNGYRQTTTSNRSIHVPDDLKGIRLRVPMS 182 Query: 189 PLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSITNHMW 248 P+WTSMF++ A+P SINF+EVYS+LQT++VEGQENP+A I+ AKLYEVQKYCS+TNHMW Sbjct: 183 PIWTSMFQSLGASPASINFSEVYSSLQTRVVEGQENPLATITAAKLYEVQKYCSLTNHMW 242 Query: 249 DGFWFLGNKKSFERLPKDLQDLMARLINEAAMNQRADVRKLNDSLVDEMKGKGLAFNNAD 308 DGFWFL NK+SFERLPKDLQ ++ IN+AA+ +RADV KLN SL+ E+K KGL FN+ D Sbjct: 243 DGFWFLANKQSFERLPKDLQVIVRNAINDAAVQERADVAKLNASLMPELKSKGLQFNDVD 302 Query: 309 ADSFRAKLRSAGFYAEWKKKFGDEPWALLEKYTGKLA 345 ++FR +L + GFYA+W KKFGD+ W LEKYTGKLA Sbjct: 303 MNAFRKQLTATGFYADWHKKFGDDAWTALEKYTGKLA 339 >ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas palustris BisA53] gb|ABJ06813.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas palustris BisA53] Length = 339 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 223/338 (65%), Positives = 267/338 (78%), Gaps = 1/338 (0%) Query: 8 ITRRHFLKTASVASAAAATGLVSTQAFAAAEFTLKYANNLPATHPMNLRAKEMAAKIATE 67 ++RR LK ++ A+ G A AEF+ KYANNLP THPMN+RA+EMAA I E Sbjct: 3 VSRRTLLKASAAATVIGGLGAPFVARAAEAEFSYKYANNLPDTHPMNIRAREMAAAIKAE 62 Query: 68 SKGRIELQLYPNNQLGNDTDTLGQVRSGAVDFFTLSPLILGTLVPAAQISGIGFAFKDYS 127 + GR+E+Q++P+NQLG+DTD L Q+RSG V+FFTLS LIL TLVPAA I+GIGFAF DY Sbjct: 63 TGGRVEIQIFPSNQLGSDTDMLSQIRSGGVEFFTLSGLILATLVPAASINGIGFAFPDYE 122 Query: 128 QVWPAMDGELGAHVRKQIEAKSTLFAFEKIWDNGYRQITNSTKPIKAADDLKGMKLRVPP 187 VW AMDGELGAHVR +I K+ L +KIWDNG+RQ T+S+KPI DD KG K+RVP Sbjct: 123 TVWKAMDGELGAHVRGEI-GKANLVVMDKIWDNGFRQTTSSSKPITGPDDFKGFKIRVPV 181 Query: 188 SPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSITNHM 247 SPLWTSMFKAFDA+P SINF+EVYSALQTK+VEGQENP+AIISTAKLYEVQKYCS+TNHM Sbjct: 182 SPLWTSMFKAFDASPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHM 241 Query: 248 WDGFWFLGNKKSFERLPKDLQDLMARLINEAAMNQRADVRKLNDSLVDEMKGKGLAFNNA 307 WDGFWFL NK+++ERLP+DL+ ++A+ IN A +NQRADV KLN L D++ KGLAFN Sbjct: 242 WDGFWFLANKRAWERLPEDLRAIVAKNINAAGINQRADVAKLNAGLKDDLAAKGLAFNQP 301 Query: 308 DADSFRAKLRSAGFYAEWKKKFGDEPWALLEKYTGKLA 345 FR KLR AGFYAEWK K+GD+ W+LLEK TG LA Sbjct: 302 AITPFREKLRKAGFYAEWKGKYGDQAWSLLEKATGSLA 339