BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4949.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777194.1| LysR family transcription regulator protein ... 561 e-158 ref|YP_003911151.1| LysR family transcriptional regulator [Burkh... 294 1e-77 ref|YP_001861067.1| LysR family transcriptional regulator [Burkh... 283 3e-74 ref|YP_002801543.1| LysR family transcriptional regulator [Azoto... 248 7e-64 gb|EGW61547.1| transcriptional regulator, LysR family [Dechloros... 244 1e-62 >ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65286.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 278/298 (93%), Positives = 290/298 (97%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTS 60 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALE+ELGAQLFDRSKRAIQLT+ Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAAYPE 120 AGKYFYRDTTEIFKALERAKRN +SSSTG+SGALKVGFMMS+AYNILP+VTRHYSAAYPE Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 Query: 121 VDMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAHKP 180 VDMRL+EYVPNLLATD+EDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPR HRLA + Sbjct: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQ 180 Query: 181 DISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 ISAAELAEDAFISIPR IAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV Sbjct: 181 SISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 Query: 241 ALVPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTFAETAVEVWGKMQTG 298 ALVPTSMQAMHLDTTVFKPLIGAP VEVAVIWN++NTNPCIRTFAETAVEVWG+MQ G Sbjct: 241 ALVPTSMQAMHLDTTVFKPLIGAPMVEVAVIWNKDNTNPCIRTFAETAVEVWGRMQPG 298 >ref|YP_003911151.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61860.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 301 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 143/290 (49%), Positives = 205/290 (70%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELR L YF +AETLHFGRAA LLHISQPPL+RQIA LE ELG LFDR++R+++L++A Sbjct: 1 MELRQLRYFVALAETLHFGRAAALLHISQPPLSRQIALLEAELGVVLFDRTRRSVRLSAA 60 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAAYPEV 121 G+ FYRD + +++A+ +A ++ G+ G L GFM ++AY+I+P +TR Y++A+P V Sbjct: 61 GQRFYRDAKTVMATVDQARGHARAADLGEEGTLMAGFMFAAAYSIVPVLTRAYASAFPRV 120 Query: 122 DMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAHKPD 181 +++LSE +P L D+ K DVGIMY + L++ TI++E L+AVLP GHRL + Sbjct: 121 ELKLSESIPTTLVADIRSGKADVGIMYPSDSAVELETRTIFSEQLVAVLPDGHRLTTRAA 180 Query: 182 ISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVA 241 IS +EL ++ FI P +P +Y+ I +HC+ GF PRI LETN QQTIVNLV + LGVA Sbjct: 181 ISVSELRDEWFIISPHAASPFIYNTIVEHCRRSGFTPRIRLETNFQQTIVNLVAQRLGVA 240 Query: 242 LVPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTFAETAVEV 291 LV +SM++ H D F PL+ AP V+VA++W+ + NPC+ F + A ++ Sbjct: 241 LVHSSMRSTHADNVKFMPLMHAPYVDVALVWSPDTLNPCVARFVDIAAQM 290 >ref|YP_001861067.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC74021.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 299 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 142/298 (47%), Positives = 195/298 (65%), Gaps = 1/298 (0%) Query: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSA 61 +ELRHL Y T+ ETLHFGRAAE LHISQPPL+RQIA LE ELG LFDR+ R ++LT+A Sbjct: 1 MELRHLHYLVTLGETLHFGRAAERLHISQPPLSRQIALLEEELGVGLFDRTSRTVKLTAA 60 Query: 62 GKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAAYPEV 121 G+ F +D EI ++ERAKRNA S++ G G+L +GFM ++A++I PA+ R Y+ YPEV Sbjct: 61 GEGFLQDAKEILASVERAKRNAISANLGHRGSLSLGFMFAAAFSIAPAILRAYTTEYPEV 120 Query: 122 DMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAHKPD 181 + + E VP+LL DL + ++DVG+MY P + +++ T++ EPL+A LP H L+ D Sbjct: 121 HLHVGEAVPSLLIQDLRESRLDVGLMYPPGEMAGMETLTVFEEPLVAALPLNHPLSGSDD 180 Query: 182 -ISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 I A +L ++ F+ R +P +D I HC+ GF P+ LETN Q T++ VG+GLGV Sbjct: 181 PIDAVDLKDEQFLITRREASPYFHDTIINHCKTEGFVPKTFLETNYQHTLITFVGQGLGV 240 Query: 241 ALVPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTFAETAVEVWGKMQTG 298 ALV SMQ F+PL PTV++ WN N NPC TF + A ++ M G Sbjct: 241 ALVHRSMQTSLPTNVKFRPLRNPPTVKLNATWNSRNRNPCTDTFVQLAAKLGPTMHPG 298 >ref|YP_002801543.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ] gb|ACO80568.1| Transcriptinal regulator, LysR family [Azotobacter vinelandii DJ] Length = 301 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 130/284 (45%), Positives = 181/284 (63%) Query: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTS 60 MIELR L YF +AE LHFG+AAE LHI+QPPL+RQI+ALE +LG LF R R+++LT+ Sbjct: 1 MIELRQLRYFMALAEHLHFGKAAESLHITQPPLSRQISALEADLGVVLFSRHSRSVELTA 60 Query: 61 AGKYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAAYPE 120 AG+ F + L+ A R+ +S+ G+ G L+V F M +A+ +LP + + YS AYP+ Sbjct: 61 AGRDFQQHAKTALAELDLAIRSTRASARGERGELRVSFTMVAAWILLPELLKAYSDAYPD 120 Query: 121 VDMRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAHKP 180 V + L+E +P L LE + D+ + + + L + EPL AVLP H LA Sbjct: 121 VSLALNEVLPRDLGPALERGEADIALTFPSSGSKSLCYRALRREPLCAVLPASHPLAAAT 180 Query: 181 DISAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 + S A LA++ FI+ PR AP +++ + C+ GF P+I LET+LQQTIVNLV EGLGV Sbjct: 181 EFSIAALADEPFITFPRQTAPALHEAVMSCCRRAGFEPKIRLETHLQQTIVNLVAEGLGV 240 Query: 241 ALVPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTF 284 ++VP SM+ M + FK + +P VE VIWN N NPC+ TF Sbjct: 241 SVVPGSMRKMRMPGVAFKAIDRSPPVEYGVIWNPRNENPCLNTF 284 >gb|EGW61547.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 299 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 127/289 (43%), Positives = 181/289 (62%) Query: 3 ELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALERELGAQLFDRSKRAIQLTSAG 62 +LR L YF T+ ETLHFGRAA LLHISQPPL+RQIAALE LG L RS R ++LT AG Sbjct: 4 DLRQLRYFVTLGETLHFGRAAALLHISQPPLSRQIAALEESLGVMLLQRSSRQVELTVAG 63 Query: 63 KYFYRDTTEIFKALERAKRNAASSSTGQSGALKVGFMMSSAYNILPAVTRHYSAAYPEVD 122 ++F+ + LE+A + + G+ G+L++ F M++A++ LP + + Y +P+V+ Sbjct: 64 QHFHAQARRLLADLEQAVQGTRAVHRGEQGSLRLDFTMAAAWSALPPLIKAYRRDFPQVE 123 Query: 123 MRLSEYVPNLLATDLEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRGHRLAHKPDI 182 ++L E +P L L + DVG+ + + L+ ++ EPL AVLP H LA + + Sbjct: 124 VQLGELLPRELDDSLLAGRCDVGLAFPWQRPAGLEYLCVHREPLCAVLPAEHPLAQEETV 183 Query: 183 SAAELAEDAFISIPRPIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVAL 242 + A+LA + FI+ P AP ++ L+ C+ HGF P++ LET+LQQTIVNLV EGLGV+L Sbjct: 184 AVADLAGEPFITFPAATAPALHALVAGCCREHGFEPKVCLETHLQQTIVNLVAEGLGVSL 243 Query: 243 VPTSMQAMHLDTTVFKPLIGAPTVEVAVIWNRENTNPCIRTFAETAVEV 291 VP SM M L F+P+ P VE +IW N NPC+ F A +V Sbjct: 244 VPRSMGKMQLQGAAFRPIAAPPLVEQGIIWAAANPNPCLPHFLACARQV 292