BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4948.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777193.1| sigma54-dependent transcription regulator pr... 590 e-166 ref|YP_003911150.1| sigma54 specific transcriptional regulator, ... 323 4e-86 ref|YP_001020809.1| acetoin catabolism regulatory protein [Methy... 310 2e-82 ref|ZP_03697401.1| sigma54 specific transcriptional regulator, F... 305 9e-81 ref|YP_935377.1| sigma-54-dependent transcriptional regulator [A... 301 1e-79 >ref|YP_003777193.1| sigma54-dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65285.1| sigma54-dependent transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 315/385 (81%), Positives = 337/385 (87%), Gaps = 10/385 (2%) Query: 1 MPTTPVAQPLP----DSDVCLTPVPPSASPRHAPRYRDIGQLAAGDELMRDLVERGKRLI 56 MPTTPV QPL DSDV + SAS RHAPRYRDI QLAAGD M DL+ERGKRLI Sbjct: 53 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLIERGKRLI 112 Query: 57 DRGIPVLILGETGTGKEYLARALHDYSARRRASWIAINCASIPESLAESELFGYCKGAFS 116 DRGIPVLILGETGTGKEYL+RALHDYSARRRASWIA+NCASIPESLAESELFGYCKGAFS Sbjct: 113 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 172 Query: 117 GALPGGMKGKVQQADGGTLFLDEIGDMPFALQTRLLRVLSEREVIPLGALRPVPVDVQLI 176 GALPGGMKGKVQQADGGTLFLDEIGDMP ALQTRLLRVLSEREVIPLGA PVPVDVQLI Sbjct: 173 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 232 Query: 177 CATHQDLKTLVAEGRFREDLYYRIAGGVLRLPALRDRSDRPALVMQMIADELGHPADESM 236 CATHQDLKTL+AEGRFREDLYYR+AGGVLRLPALR+RSDR LVMQMI +ELG PAD+S+ Sbjct: 233 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMITEELGRPADDSV 292 Query: 237 LDPVALQRLLAYPWPGNLRQLHAVIRYSCAVMNDGRITLRDLPEELMQFQPVTLAQVLPL 296 ++ ALQRLLAYPWPGNLRQ+HAVIRYSCAVMN GRI +RDLPEELMQFQP TLA+V P+ Sbjct: 293 IEAAALQRLLAYPWPGNLRQMHAVIRYSCAVMNGGRIEVRDLPEELMQFQPATLAEVHPI 352 Query: 297 HRPA------SRMAAEGSSQANAADPGRDERTRVIEALNGSRWNISAASRQLGMCRASLY 350 R A SR E + ++ DP RDERTRVI+ALNGSRWNISAASRQLGMCRASLY Sbjct: 353 TRTAQIRPFTSRAEGEAGRERSSGDPYRDERTRVIDALNGSRWNISAASRQLGMCRASLY 412 Query: 351 RKLRQLEIPHVRDQAMPAHAAYAVA 375 RKLRQL+IPHVRDQAMPA+ AYAVA Sbjct: 413 RKLRQLDIPHVRDQAMPAYPAYAVA 437 >ref|YP_003911150.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] gb|ADN61859.1| sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] Length = 390 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 191/358 (53%), Positives = 234/358 (65%), Gaps = 29/358 (8%) Query: 35 IGQLAAGDELMRDLVERGKRLIDRGIPVLILGETGTGKEYLARALHDYSARRRASWIAIN 94 +G+L D M ++ R + LIDR +P+LILGETGTGKEYLARALHDYS+RR AS +++N Sbjct: 22 LGRLCGNDATMLAVLSRARLLIDRQLPILILGETGTGKEYLARALHDYSSRRHASMVSVN 81 Query: 95 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPFALQTRLLRV 154 C SIPE+L ESELFGY +GAFSGAL GMKGKV A GTLFLDEIGDMP A QTRLLR Sbjct: 82 CGSIPENLIESELFGYTRGAFSGALSSGMKGKVVLAHRGTLFLDEIGDMPAAQQTRLLRA 141 Query: 155 LSEREVIPLGALRPVPVDVQLICATHQDLKTLVAEGRFREDLYYRIAGGVLRLPALRDRS 214 LSEREV P+G+ P+ VD+QLICATHQ++++ V G FREDLYYRIA G++ LP +R+R Sbjct: 142 LSEREVTPIGSAEPIAVDLQLICATHQNIESRVEAGTFREDLYYRIAVGIIHLPPVRERH 201 Query: 215 DRPALVMQMIADELGHPADESMLDPVALQRLLAYPWPGNLRQLHAVIRYSCAVMNDGRIT 274 DR L+ ++ E E +D A + LL WPGNLRQ+ A I+Y+CAV + I Sbjct: 202 DRAWLLQSILEREAPGFTLEGNVDSEAREMLLHCNWPGNLRQMRAAIQYACAVKSGELIR 261 Query: 275 LRDLPEEL-------------------MQFQPVTLAQV--LPLHRPASRM--AAEGSSQA 311 DLP + +Q P A LP A+ M AA G+ A Sbjct: 262 ACDLPANVQPGKGLGVRREPRASFHATLQAAPPAYATSDDLPHAAAANDMPYAARGARGA 321 Query: 312 NAADPGR------DERTRVIEALNGSRWNISAASRQLGMCRASLYRKLRQLEIPHVRD 363 AD R ER ++ AL+ SRWNISAASR+LG+CRASLYRKLRQ IPHVRD Sbjct: 322 PHADIARLPVAAPSERDNILRALSASRWNISAASRELGICRASLYRKLRQFRIPHVRD 379 >ref|YP_001020809.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum PM1] gb|ABM94574.1| acetoin catabolism regulatory protein [Methylibium petroleiphilum PM1] Length = 666 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 167/341 (48%), Positives = 228/341 (66%), Gaps = 8/341 (2%) Query: 19 PVPPSASPRHAPRYRDIGQLAAGDELMRDLVERGKRLIDRGIPVLILGETGTGKEYLARA 78 PV S R A + + +LA GD M L+ + KRL+DR + +LI GETG+GKE A+A Sbjct: 327 PVAVSTVARSADSFPALDRLAGGDPAMDRLLVQAKRLVDRKVNILIHGETGSGKEVFAKA 386 Query: 79 LHDYSARRRASWIAINCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLD 138 LH+ S+R R +IA+NCASIPESL ESELFGY G+F+G GMKG + QA GGTLFLD Sbjct: 387 LHESSSRARMPFIAVNCASIPESLIESELFGYTPGSFTGGKSKGMKGLILQAHGGTLFLD 446 Query: 139 EIGDMPFALQTRLLRVLSEREVIPLGALRPVPVDVQLICATHQDLKTLVAEGRFREDLYY 198 EIGDMP LQTR LRVLSE EV+PLGA RP+PVD +I ATH+DL+ VA G FREDLYY Sbjct: 447 EIGDMPLHLQTRFLRVLSESEVLPLGAERPIPVDFTVIAATHRDLRDRVAAGTFREDLYY 506 Query: 199 RIAGGVLRLPALRDRSDRPALVMQMIADELGHPADESMLDPVALQRLLAYPWPGNLRQLH 258 R+ G + LPALR+R+D+ L+ + DE + + + A++ LL Y WPGN+R+L Sbjct: 507 RLCGATMSLPALRERADKRYLIESVFNDEAKGLTEHAGISAEAMELLLTYSWPGNIRELR 566 Query: 259 AVIRYSCAVMNDGRITLRDLPEEL-MQFQPVTLAQVLPLHRPASRMAAEGSSQANAADPG 317 V+R++ A+ DG +T+ DLP+E+ MQ L PL A R+ EG + A D Sbjct: 567 NVLRFALAISGDGPVTVDDLPQEIGMQ----RLGHGRPLQLQA-RLGDEGIAMAAGVDDI 621 Query: 318 RDERTRVIEALNGSRWNISAASRQLGMCRASLYRKLRQLEI 358 E R++ +L ++WNI+ AS+ L +CRA++YR++++ +I Sbjct: 622 DAE--RLLNSLKRNKWNITLASQDLKVCRATVYRQMKRFKI 660 >ref|ZP_03697401.1| sigma54 specific transcriptional regulator, Fis family [Lutiella nitroferrum 2002] gb|EEG09887.1| sigma54 specific transcriptional regulator, Fis family [Lutiella nitroferrum 2002] Length = 660 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 165/350 (47%), Positives = 230/350 (65%), Gaps = 21/350 (6%) Query: 20 VPPSASPRHA-----------PRYRDIGQLAAGDELMRDLVERGKRLIDRGIPVLILGET 68 +PP +PR A P + +LA D M+ ++E+ KRL+++G+ +LI GET Sbjct: 315 IPPRIAPRPAVSATARESVPLPACPALDRLAGDDRQMQRILEQSKRLVNKGVNILIHGET 374 Query: 69 GTGKEYLARALHDYSARRRASWIAINCASIPESLAESELFGYCKGAFSGALPGGMKGKVQ 128 GTGKE A+ALH+ S R +IA+NCA+IP+SL ESELFGY G F+GA GMKG +Q Sbjct: 375 GTGKEVFAKALHESSERAARPFIAVNCAAIPDSLIESELFGYAPGTFTGARSKGMKGLIQ 434 Query: 129 QADGGTLFLDEIGDMPFALQTRLLRVLSEREVIPLGALRPVPVDVQLICATHQDLKTLVA 188 Q+D GTLFLDEIGDMP LQTRLLRVLSEREV+PLGA +PV V++ +I A+H+DL+ L+A Sbjct: 435 QSDRGTLFLDEIGDMPLHLQTRLLRVLSEREVLPLGADKPVRVELTVIAASHRDLRKLIA 494 Query: 189 EGRFREDLYYRIAGGVLRLPALRDRSDRPALVMQMIADELGHPADESMLDPVALQRLLAY 248 G+FREDLYYR+ G L LP LR+R D+ L+ ++ A+E +L AL L+ Y Sbjct: 495 GGQFREDLYYRLCGATLFLPPLRERQDKRYLIERLFAEEAAQSGQSPVLAEAALACLMDY 554 Query: 249 PWPGNLRQLHAVIRYSCAVMNDGRITLRDLPEELMQFQPVTLAQVLPLHRPASRMAAEGS 308 PWPGN+RQL V+R++ A+ + G + L DLP ELM+ +P PL + AE Sbjct: 555 PWPGNVRQLRNVLRFALALSDGGSVELGDLPHELMEGRP-------PLEETLTPPKAERE 607 Query: 309 SQANAADPGRDERTRVIEALNGSRWNISAASRQLGMCRASLYRKLRQLEI 358 AA DE ++ AL ++WN++AA+ +LG+CRA++YR +++ I Sbjct: 608 ESLPAA---LDEAGLLLAALRRNKWNVTAAAAELGICRATVYRHMKKFSI 654 >ref|YP_935377.1| sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72] emb|CAL96491.1| Sigma-54-dependent transcriptional regulator [Azoarcus sp. BH72] Length = 655 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 161/327 (49%), Positives = 223/327 (68%), Gaps = 5/327 (1%) Query: 37 QLAAGDELMRDLVERGKRLIDRGIPVLILGETGTGKEYLARALHDYSARRRASWIAINCA 96 +LA D M+ L+ + RL++R + +L+ GETGTGKE LA+ALH+ S+R ++A+NCA Sbjct: 331 RLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVNCA 390 Query: 97 SIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPFALQTRLLRVLS 156 +IPESL ESELFGY G F+G GM+G +QQADGGTLFLDEIGDMP LQTRLLRVL+ Sbjct: 391 AIPESLIESELFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRVLA 450 Query: 157 EREVIPLGALRPVPVDVQLICATHQDLKTLVAEGRFREDLYYRIAGGVLRLPALRDRSDR 216 EREV+PLGA +PVPV++ ++ A+H+DL+ L+AEG FREDLYYR+ G +L LP LR+R DR Sbjct: 451 EREVLPLGAEKPVPVNLTVVAASHRDLRKLIAEGSFREDLYYRLCGAILYLPPLRERRDR 510 Query: 217 PALVMQMIADELGHPADESMLDPVALQRLLAYPWPGNLRQLHAVIRYSCAVMNDGRITLR 276 L+ +++A E + LDP A LL Y WPGN+RQL V+R++ AV + I + Sbjct: 511 DYLIDRLLAAEGAELGTSAALDPAARGLLLGYDWPGNVRQLRNVLRFALAVCDGEHILPQ 570 Query: 277 DLPEELMQFQPVTLAQVLPLHRPASRMAAEGSSQANAADPGRDERTRVIEALNGSRWNIS 336 DLP ELM P ++ + + + A + ADP R E + AL WNI+ Sbjct: 571 DLPAELMASAPQAPSRTPAIATATAAVTAPAAVTTPGADPVRGE---LEAALRRHHWNIT 627 Query: 337 AASRQLGMCRASLYRKLRQLEI--PHV 361 AA+ +LG+CRA++YR++++ I PH+ Sbjct: 628 AAAAELGVCRATIYRQMKRHGIVPPHL 654