BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4943.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777190.1| Tfp pilus assembly protein, pilus retraction... 401 e-110 ref|YP_001098645.1| twitching mobility protein [Herminiimonas ar... 368 e-100 ref|YP_004751412.1| twitching motility protein [Collimonas fungi... 368 e-100 ref|NP_841038.1| twitching mobility protein [Nitrosomonas europa... 366 3e-99 ref|YP_001352030.1| PilT twitching motility protein [Janthinobac... 365 5e-99 >ref|YP_003777190.1| Tfp pilus assembly protein, pilus retraction ATPase PilT protein [Herbaspirillum seropedicae SmR1] gb|ADJ65282.1| Tfp pilus assembly protein, pilus retraction ATPase PilT protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 251/338 (74%), Positives = 286/338 (84%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLDGAHLQQSLLAVMPAPLQ 60 MDIA LLAFAVRNQASDLHLCAG+ PLLRVHGA+RR+NLQ G LQQ L A+MPA L Sbjct: 1 MDIAVLLAFAVRNQASDLHLCAGMPPLLRVHGALRRVNLQAPTGPQLQQWLQALMPAALH 60 Query: 61 PHYRAGTDCDFALALPGLGRFRIHAFHQQRGPAAAIRPLGQQPPALAELHAPPACAELAT 120 P Y G +CDFA+ L LGRFR+HAF +Q GPA AIR LG++PP LA+L APP CAELA Sbjct: 61 PRYAQGRECDFAIELAALGRFRVHAFLRQGGPAVAIRHLGREPPTLAQLGAPPLCAELAE 120 Query: 121 RPHGLVLVSGPTGSGKSSTLAAMVRLINETRPVHILTLEDPIEFLHTPCRALVSQREIGT 180 R GLVLV+GPTG+GKSSTLAAM+R +NETR +HILT+EDPIEF+HTP RAL+SQRE+GT Sbjct: 121 RAGGLVLVTGPTGAGKSSTLAAMIRHLNETRALHILTIEDPIEFIHTPQRALISQRELGT 180 Query: 181 HVASFAQALRAALREDPDVLLVGELRDTETIRLALTAAETGHLVLATLHAASAARAVDRI 240 H A ALRAALR DPDVLLVGELRD +TIRLALTAAETGHLVL TLHAASAAR V+R+ Sbjct: 181 HTADLPAALRAALRADPDVLLVGELRDADTIRLALTAAETGHLVLGTLHAASAARTVERM 240 Query: 241 IDAFPEGEKDTARALLAEALQGVVAQVLVPSADGAARVAAHEVLVATAAVRNLIREGRSA 300 +D FP GEK+ ARA+LAE+LQGV+AQ L+P+ADG ARVAAHE+LVAT AVRNLIREGRSA Sbjct: 241 LDVFPAGEKEPARAMLAESLQGVIAQTLLPTADGRARVAAHELLVATPAVRNLIREGRSA 300 Query: 301 QLLSAMQAGAAQGMQTLQASLSLLVQQGRISAASAREH 338 QLLS MQAGAAQGMQTL+A+L L QQGRISA + R+H Sbjct: 301 QLLSLMQAGAAQGMQTLEAALQRLHQQGRISAQTLRQH 338 >ref|YP_001098645.1| twitching mobility protein [Herminiimonas arsenicoxydans] emb|CAL60516.1| Pilus retraction protein PilT [Herminiimonas arsenicoxydans] Length = 347 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 190/336 (56%), Positives = 253/336 (75%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLDGAHLQQSLLAVMPAPLQ 60 MDI+ LLAF+V+N+ASDLHL AGL P++RVHG +RRINL PL+ + + +M + Sbjct: 1 MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQR 60 Query: 61 PHYRAGTDCDFALALPGLGRFRIHAFHQQRGPAAAIRPLGQQPPALAELHAPPACAELAT 120 Y + DF+ A+PGL RFR++AF+Q RG AA +R + + +L +LHAP AEL+ Sbjct: 61 KVYEERLEIDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLHAPKIFAELSL 120 Query: 121 RPHGLVLVSGPTGSGKSSTLAAMVRLINETRPVHILTLEDPIEFLHTPCRALVSQREIGT 180 +P GLVLV+GPTGSGKS+TLAAMV +NE HILT+EDPIEF+H + L++QRE+G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHDSKKCLINQREVGP 180 Query: 181 HVASFAQALRAALREDPDVLLVGELRDTETIRLALTAAETGHLVLATLHAASAARAVDRI 240 H SF ALR+ALREDPDV+LVGELRD ETIRLAL+AAETGHLV TLH +SAA+ +DRI Sbjct: 181 HTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDAFPEGEKDTARALLAEALQGVVAQVLVPSADGAARVAAHEVLVATAAVRNLIREGRSA 300 ID FP EK+ RA+L+E+LQ V++Q L+ + DG+ RVAAHE+++ T A+RNLIRE + A Sbjct: 241 IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QLLSAMQAGAAQGMQTLQASLSLLVQQGRISAASAR 336 Q+ SA+Q G+ GMQTL ++L+ LV++ IS A+AR Sbjct: 301 QMYSAIQTGSNVGMQTLDSNLTELVKRNVISNAAAR 336 >ref|YP_004751412.1| twitching motility protein [Collimonas fungivorans Ter331] gb|AEK60589.1| Twitching motility protein [Collimonas fungivorans Ter331] Length = 347 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 190/336 (56%), Positives = 252/336 (75%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLDGAHLQQSLLAVMPAPLQ 60 MDI+ LLAF+V+N++SDLHL AGL P++RVHG +RRINL PL+ + + +M + Sbjct: 1 MDISELLAFSVKNKSSDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHSMIYDIMNDGQR 60 Query: 61 PHYRAGTDCDFALALPGLGRFRIHAFHQQRGPAAAIRPLGQQPPALAELHAPPACAELAT 120 Y +CDF+ +PGL RFR++AF+Q RG AA +R + L +L+AP AELA Sbjct: 61 KAYEEHLECDFSFEIPGLARFRVNAFNQDRGAAAVLRTIPSTVLTLEQLNAPRIFAELAL 120 Query: 121 RPHGLVLVSGPTGSGKSSTLAAMVRLINETRPVHILTLEDPIEFLHTPCRALVSQREIGT 180 +P GLVLV+GPTGSGKS+TLAAMV +NE HILT+EDPIEF+H + L++QRE+G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHQSNKCLINQREVGP 180 Query: 181 HVASFAQALRAALREDPDVLLVGELRDTETIRLALTAAETGHLVLATLHAASAARAVDRI 240 H SF+ ALR+ALREDPDV+LVGELRD ETIRLALTAAETGHLV TLH +SAA+ +DRI Sbjct: 181 HTHSFSNALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDAFPEGEKDTARALLAEALQGVVAQVLVPSADGAARVAAHEVLVATAAVRNLIREGRSA 300 +D FP EK+ RA+L+E+LQ V++Q L+ + DG+ RVAAHE+++ T A+RNLIRE + A Sbjct: 241 VDVFPGEEKEMVRAMLSESLQAVISQSLLKTKDGSGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QLLSAMQAGAAQGMQTLQASLSLLVQQGRISAASAR 336 Q+ SA+Q G+ GMQTL ++L+ LV++ IS ASAR Sbjct: 301 QMYSAIQTGSNMGMQTLDSNLTELVKRNVISLASAR 336 >ref|NP_841038.1| twitching mobility protein [Nitrosomonas europaea ATCC 19718] emb|CAD84876.1| pilT; twitching mobility protein transport fimbria [Nitrosomonas europaea ATCC 19718] Length = 347 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 187/340 (55%), Positives = 248/340 (72%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLDGAHLQQSLLAVMPAPLQ 60 M+I LL+F V+N ASDLHL AG+ P++RVHG IRRINL L+ + + +M + Sbjct: 1 MNIVELLSFVVKNNASDLHLSAGMPPMIRVHGEIRRINLPALEHKDVHDMVYDIMNDSQR 60 Query: 61 PHYRAGTDCDFALALPGLGRFRIHAFHQQRGPAAAIRPLGQQPPALAELHAPPACAELAT 120 HY +CDF+ A+P L RFR++AF+ QRG A+ +R + + L EL AP AE+A Sbjct: 61 KHYEEHLECDFSFAIPDLARFRVNAFNTQRGAASVLRTIPSRVLTLEELKAPKIFAEIAQ 120 Query: 121 RPHGLVLVSGPTGSGKSSTLAAMVRLINETRPVHILTLEDPIEFLHTPCRALVSQREIGT 180 +P G+VLV+GPTGSGKS+TLAAMV INE + HILTLEDPIEF+H + L++QRE+G Sbjct: 121 QPRGVVLVTGPTGSGKSTTLAAMVNDINENQYGHILTLEDPIEFVHESKKCLINQREVGR 180 Query: 181 HVASFAQALRAALREDPDVLLVGELRDTETIRLALTAAETGHLVLATLHAASAARAVDRI 240 SF+ ALRAALREDPD++LVGE+RD ETIRLA+TAAETGHLV TLH +SAA+ +DRI Sbjct: 181 DTHSFSNALRAALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDAFPEGEKDTARALLAEALQGVVAQVLVPSADGAARVAAHEVLVATAAVRNLIREGRSA 300 ID FP EK+ RA+L+E+L+ V++Q L+ + DG RVAAHE+++ T A+RNLIREG+ A Sbjct: 241 IDVFPAEEKEMVRAMLSESLRAVISQALLKTKDGKGRVAAHEIMIGTPAIRNLIREGKVA 300 Query: 301 QLLSAMQAGAAQGMQTLQASLSLLVQQGRISAASAREHGL 340 Q+ SA+Q G GMQTL +L+ LV++G ISA AR + Sbjct: 301 QMYSAIQTGQGVGMQTLDQNLTDLVKRGVISAVEARTKAM 340 >ref|YP_001352030.1| PilT twitching motility protein [Janthinobacterium sp. Marseille] gb|ABR88865.1| PilT twitching motility protein [Janthinobacterium sp. Marseille] Length = 347 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 190/336 (56%), Positives = 253/336 (75%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLDGAHLQQSLLAVMPAPLQ 60 MDI+ LLAF+V+N+ASDLHL AGL P++RVHG +RRINL PL+ + + +M + Sbjct: 1 MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQR 60 Query: 61 PHYRAGTDCDFALALPGLGRFRIHAFHQQRGPAAAIRPLGQQPPALAELHAPPACAELAT 120 Y + DF+ A+PGL RFR++AF+Q RG AA +R + + +L +L+AP A+LA Sbjct: 61 KVYEERLEIDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLNAPKIFADLAL 120 Query: 121 RPHGLVLVSGPTGSGKSSTLAAMVRLINETRPVHILTLEDPIEFLHTPCRALVSQREIGT 180 +P GLVLV+GPTGSGKS+TLAAMV +NE HILT+EDPIEF+H + L++QRE+G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHDSKKCLINQREVGP 180 Query: 181 HVASFAQALRAALREDPDVLLVGELRDTETIRLALTAAETGHLVLATLHAASAARAVDRI 240 H SF ALR+ALREDPDV+LVGELRD ETIRLAL+AAETGHLV TLH +SAA+ +DRI Sbjct: 181 HTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDAFPEGEKDTARALLAEALQGVVAQVLVPSADGAARVAAHEVLVATAAVRNLIREGRSA 300 ID FP EK+ RA+L+E+LQ V++Q L+ + DG+ RVAAHE+++ T A+RNLIRE + A Sbjct: 241 IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIREAKIA 300 Query: 301 QLLSAMQAGAAQGMQTLQASLSLLVQQGRISAASAR 336 Q+ SA+Q G+ GMQTL A+L+ LV++ IS A+AR Sbjct: 301 QMYSAIQTGSNVGMQTLDANLTELVKRNVISNAAAR 336