BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4942.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herba... 327 1e-87 ref|YP_001098646.1| hypothetical protein HEAR0290 [Herminiimonas... 293 1e-77 ref|YP_003905738.1| alanine racemase domain-containing protein [... 288 5e-76 ref|YP_001858735.1| alanine racemase domain-containing protein [... 283 2e-74 ref|ZP_03269211.1| alanine racemase domain protein [Burkholderia... 278 5e-73 >ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae SmR1] gb|ADJ65281.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 192/233 (82%), Positives = 207/233 (88%) Query: 1 MSSIAQHLQHVQQQIAQAAGQAGRVPSSVQLLAVSKTFGPEAVAEAVAAGQRAFGENYLQ 60 MSSIAQ+LQHVQQQIA AA +AGR +VQLLAVSKTFGP+AV EAV AGQRAFGENYLQ Sbjct: 1 MSSIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQ 60 Query: 61 EALDKIAALPALVPETPLEWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPEE 120 EAL+KIAALP L P+ PL+WHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRP Sbjct: 61 EALEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAA 120 Query: 121 LGPLNICLQVNISAEASKSGLTPEELPEVAAQVAQLPRLRLRGLMAIPAPSDDMKQQRAA 180 LG LN+CLQVNIS E SKSGL P ELP VAAQVAQLP L+LRGLMAIPAPS+D+ QQRAA Sbjct: 121 LGALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAA 180 Query: 181 FAAVRGLYEQLRTGGLPLDTLSMGMSADLEAAVAEGATIVRVGSAIFGARHYA 233 FAAVR L QL+ GL LDTLSMGMSADL+AAVAEGA+IVR+GSAIFGARHYA Sbjct: 181 FAAVRSLLAQLQAQGLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGARHYA 233 >ref|YP_001098646.1| hypothetical protein HEAR0290 [Herminiimonas arsenicoxydans] emb|CAL60517.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 234 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 164/233 (70%), Positives = 186/233 (79%) Query: 1 MSSIAQHLQHVQQQIAQAAGQAGRVPSSVQLLAVSKTFGPEAVAEAVAAGQRAFGENYLQ 60 MS I Q+LQ V+Q+I AA A R V+LLAVSKTFG +AV A AGQRAFGENYLQ Sbjct: 1 MSVIRQNLQAVRQRITDAANSAQRDVHEVELLAVSKTFGADAVLAAAEAGQRAFGENYLQ 60 Query: 61 EALDKIAALPALVPETPLEWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPEE 120 EALDK+ A+ A+ P+ PLEWHFIGP+QSNKTRPIAEHFDWVH+VDR KIA RLSEQRP Sbjct: 61 EALDKMDAVRAIRPDLPLEWHFIGPVQSNKTRPIAEHFDWVHAVDREKIAHRLSEQRPAT 120 Query: 121 LGPLNICLQVNISAEASKSGLTPEELPEVAAQVAQLPRLRLRGLMAIPAPSDDMKQQRAA 180 L PLNICLQVNIS EASKSG P + P +A +A+LP LRLRGLMAIP P DD +QR + Sbjct: 121 LPPLNICLQVNISGEASKSGALPADAPGLAKAIAKLPHLRLRGLMAIPEPEDDEVRQRRS 180 Query: 181 FAAVRGLYEQLRTGGLPLDTLSMGMSADLEAAVAEGATIVRVGSAIFGARHYA 233 F +R LYEQLR GLPLDTLSMGMSAD+ AA+AEGATIVR+GSAIFG R+YA Sbjct: 181 FHQLRVLYEQLRAEGLPLDTLSMGMSADMPAAIAEGATIVRIGSAIFGTRNYA 233 >ref|YP_003905738.1| alanine racemase domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN56447.1| alanine racemase domain protein [Burkholderia sp. CCGE1003] Length = 232 Score = 288 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 163/233 (69%), Positives = 186/233 (79%), Gaps = 2/233 (0%) Query: 1 MSSIAQHLQHVQQQIAQAAGQAGRVPSSVQLLAVSKTFGPEAVAEAVAAGQRAFGENYLQ 60 M + +L+ VQQ+IA AA AGR S+ LLAVSKTF E V A AAGQRAFGENY+Q Sbjct: 1 MPDLIHNLEAVQQRIATAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQ 60 Query: 61 EALDKIAALPALVPETPLEWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPEE 120 EAL KI AL L T LEWHFIGP+QSNKTRP+AEHFDWVHSVDRLKIAQRLSEQRPE Sbjct: 61 EALTKIEALGDL--RTSLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPEH 118 Query: 121 LGPLNICLQVNISAEASKSGLTPEELPEVAAQVAQLPRLRLRGLMAIPAPSDDMKQQRAA 180 L PLN+CLQVNIS EASKSG++ EE +VA ++A LPRLRLRGLMAIP P+ ++ QQR Sbjct: 119 LPPLNVCLQVNISGEASKSGVSAEEALQVAKEIAALPRLRLRGLMAIPEPAGNIDQQRVP 178 Query: 181 FAAVRGLYEQLRTGGLPLDTLSMGMSADLEAAVAEGATIVRVGSAIFGARHYA 233 +R L+E+LR GLPLDTLSMGMS+DLEAAV EGATIVRVG+AIFGAR Y+ Sbjct: 179 HRRLRELFERLRDDGLPLDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231 >ref|YP_001858735.1| alanine racemase domain-containing protein [Burkholderia phymatum STM815] gb|ACC71689.1| alanine racemase domain protein [Burkholderia phymatum STM815] Length = 232 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 162/233 (69%), Positives = 182/233 (78%), Gaps = 2/233 (0%) Query: 1 MSSIAQHLQHVQQQIAQAAGQAGRVPSSVQLLAVSKTFGPEAVAEAVAAGQRAFGENYLQ 60 M +A +L V Q+IA AA AGR P S+ LLAVSKTF E V A AGQRAFGENY+Q Sbjct: 1 MPDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQ 60 Query: 61 EALDKIAALPALVPETPLEWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPEE 120 EAL KI AL L L WHFIGP+QSNKTRP+AEHFDWVHSVDRLKIAQRLSEQRP+ Sbjct: 61 EALTKIGALSDL--RASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDT 118 Query: 121 LGPLNICLQVNISAEASKSGLTPEELPEVAAQVAQLPRLRLRGLMAIPAPSDDMKQQRAA 180 LN+CLQVNIS EASKSG+TPEE +VA QVA LPRLRLRGLMAIP P+ D++QQR Sbjct: 119 APALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVP 178 Query: 181 FAAVRGLYEQLRTGGLPLDTLSMGMSADLEAAVAEGATIVRVGSAIFGARHYA 233 A+R L+++LR GL LDTLSMGMS DLEAAV EGATIVRVG+AIFGAR Y+ Sbjct: 179 HRALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYS 231 >ref|ZP_03269211.1| alanine racemase domain protein [Burkholderia sp. H160] gb|EDZ99191.1| alanine racemase domain protein [Burkholderia sp. H160] Length = 240 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 156/230 (67%), Positives = 185/230 (80%), Gaps = 2/230 (0%) Query: 4 IAQHLQHVQQQIAQAAGQAGRVPSSVQLLAVSKTFGPEAVAEAVAAGQRAFGENYLQEAL 63 +A +L V ++IA+AA AGR SV LLAVSKTF +AV A AAGQRAFGENY+QE+L Sbjct: 12 LAHNLADVHERIARAAQAAGRDAQSVALLAVSKTFPADAVRAAHAAGQRAFGENYVQESL 71 Query: 64 DKIAALPALVPETPLEWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPEELGP 123 DKI L L LEWHFIGP+QSNKTRP+AEHFDWVHSVDRLKIAQRLSEQRP++L P Sbjct: 72 DKIRTLADL--RASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDDLPP 129 Query: 124 LNICLQVNISAEASKSGLTPEELPEVAAQVAQLPRLRLRGLMAIPAPSDDMKQQRAAFAA 183 LN+CLQVNIS EASKSG+T E ++A Q+A+LP+LRLRGLM+IP P+ D+ +QRA Sbjct: 130 LNVCLQVNISGEASKSGVTVAEAADIAQQIAELPKLRLRGLMSIPEPAGDLDEQRAPHRE 189 Query: 184 VRGLYEQLRTGGLPLDTLSMGMSADLEAAVAEGATIVRVGSAIFGARHYA 233 +R L+E+LR GL LDTLSMGMS DLEAAV EGATIVR+G+AIFGAR Y+ Sbjct: 190 LRELFERLRNDGLALDTLSMGMSEDLEAAVLEGATIVRIGTAIFGARDYS 239