BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4940.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum seropedicae... 345 3e-93 ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenic... 198 8e-49 ref|YP_004752511.1| lipoprotein [Collimonas fungivorans Ter331] ... 194 1e-47 ref|YP_001353825.1| lipoprotein nlpD precursor [Janthinobacteriu... 184 1e-44 ref|YP_004752563.1| lipoprotein [Collimonas fungivorans Ter331] ... 182 3e-44 >ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ65279.1| NlpD lipoprotein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 193/233 (82%), Positives = 206/233 (88%), Gaps = 5/233 (2%) Query: 24 GCASTADSEGYYTVKRGDTLYSIGRDFDQSPANLRAWNRLRNPDDLEVGQRILVRPPAGV 83 GCASTADS+GYYTVKRGDTLYSIGRDFDQSPANLR WNRLRNPDDLEVGQRILVRPP GV Sbjct: 23 GCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGV 82 Query: 84 VARTGAGQTPRASASSGAETTP----RKNAGKPAAKPAPKSQDDDDAPAPADAKLDWMWP 139 VARTGAGQ+PR +ASS + + +P AKPA K QDDD APA A+AK+DW WP Sbjct: 83 VARTGAGQSPRPAASSSPSASGSGSRKPAPSRPTAKPAAKPQDDD-APAGAEAKVDWSWP 141 Query: 140 TQGKSAPSADSYKKGIDITGTQGQTVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVY 199 T GKSAPSADSYKKGIDI G++GQ+VVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVY Sbjct: 142 TAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVY 201 Query: 200 AHNATITVKEGQMVTRGQQIATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252 AHN TI VKEGQ VTRGQQIATMGNSDTNKVKLYFEIRRNGKP+NVMA+LPAR Sbjct: 202 AHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIRRNGKPINVMAVLPAR 254 >ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenicoxydans] emb|CAL61431.1| putative Peptidase M23B [Herminiimonas arsenicoxydans] Length = 304 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 127/268 (47%), Positives = 156/268 (58%), Gaps = 38/268 (14%) Query: 23 SGCASTADSEGYYTVKRGDTLYSIGRDFDQSPANLRAWNRLRNPDDLEVGQRILVRPPAG 82 S +TAD +YTVK+GDTLY I DF QS + L WN+L NP+D++V Q + V PP Sbjct: 37 STAKNTADDRNFYTVKKGDTLYRIALDFGQSYSELVTWNKLANPNDIKVDQVLRVAPPDA 96 Query: 83 VVARTGAGQTPRASASSGAE---------------TTPR-----------KNAGKP---A 113 AR+G QT + SGAE T+PR + KP A Sbjct: 97 PAARSGGAQTGAVATGSGAEARPLSAPAASTAGNKTSPRGEKRPYSDSTLADMQKPEGAA 156 Query: 114 AKPAPKSQDDDDAPA--PADA-------KLDWMWPTQGKSAPSADSYKKGIDITGTQGQT 164 PK+ D PA PA A + WMWP +GK + D KKGIDI G GQ Sbjct: 157 VTTPPKAVASSDKPAEIPAAAATGAEYETVSWMWPAEGKLVATFDDNKKGIDIAGKSGQQ 216 Query: 165 VVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNATITVKEGQMVTRGQQIATMGN 224 V+AA AGKV YAG GIRGYGN+VI+KHT LLS YAHN I VKEGQ V++GQ+IA MG+ Sbjct: 217 VLAAGAGKVMYAGSGIRGYGNLVIVKHTSTLLSAYAHNKIIHVKEGQSVSKGQKIADMGD 276 Query: 225 SDTNKVKLYFEIRRNGKPVNVMALLPAR 252 SD + VKL+FEIR+ GKPV+ LP+R Sbjct: 277 SDADSVKLHFEIRQQGKPVDPSKFLPSR 304 >ref|YP_004752511.1| lipoprotein [Collimonas fungivorans Ter331] gb|AEK61688.1| lipoprotein precursor [Collimonas fungivorans Ter331] Length = 250 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 116/220 (52%), Positives = 144/220 (65%), Gaps = 23/220 (10%) Query: 33 GYYTVKRGDTLYSIGRDFDQSPANLRAWNRLRNPDDLEVGQRILVRPPAGVVARTGAGQT 92 GYYTV++GDTL SI R F +S +++ AWNRL +P+D++V Q + V P Sbjct: 54 GYYTVQKGDTLSSIARKFRRSNSDIIAWNRLSDPNDIKVDQVLRVLPQG----------- 102 Query: 93 PRASASSGAETTPRKNAGKPAAKPAPKSQDDDDAPAPADAKLDWMWPTQGKSAPSADSYK 152 A+A+SG+ PR +A AP + DD DA +DW WP G+S K Sbjct: 103 --AAATSGSTAKPRST---DSADTAPAASDDKDA-------IDWAWPASGQSGSGLGQGK 150 Query: 153 KGIDITGTQGQTVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNATITVKEGQM 212 KGIDI G GQ V+AAAAGKV Y+G GIRGYGN+VIIKH LLSVYAHN TI VKEGQM Sbjct: 151 KGIDIFGQLGQPVMAAAAGKVMYSGSGIRGYGNLVIIKHNSSLLSVYAHNKTIVVKEGQM 210 Query: 213 VTRGQQIATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252 V++GQ+IA MG SD++ VKLYFEIRR GKPV+ LP+R Sbjct: 211 VSKGQKIAEMGKSDSSAVKLYFEIRRQGKPVDPSRYLPSR 250 >ref|YP_001353825.1| lipoprotein nlpD precursor [Janthinobacterium sp. Marseille] gb|ABR89363.1| lipoprotein nlpD precursor [Janthinobacterium sp. Marseille] Length = 317 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 116/267 (43%), Positives = 147/267 (55%), Gaps = 49/267 (18%) Query: 35 YTVKRGDTLYSIGRDFDQSPANLRAWNRLRNPDDLEVGQRILVRPPAGVVARTGAGQTPR 94 YTV++GDTLY I DF QS + + AWN L NP+D++VGQ + V PP VAR+G QT Sbjct: 51 YTVRKGDTLYRIALDFGQSYSEIVAWNNLANPNDIKVGQVLRVAPPDAPVARSGGAQTGA 110 Query: 95 ASASSGAETTP------------RKNAGKPAAKPAPKS-------QDDDDAPAPA----- 130 ++SS E+ P N P + P S Q D P A Sbjct: 111 IASSSVVESRPLGAPSSTTVSASATNKTSPRGEKRPYSDATLAEMQKPDSTPVVAAAPAA 170 Query: 131 -------------------------DAKLDWMWPTQGKSAPSADSYKKGIDITGTQGQTV 165 D + W+WP +GK + D +KG+DI G GQ V Sbjct: 171 TPATATAAKPATPAEAAAPVALAADDDSVSWIWPAEGKVVGTFDDGRKGLDIAGKSGQAV 230 Query: 166 VAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNATITVKEGQMVTRGQQIATMGNS 225 +AA AGKV YAG GIRGYGN+VI+KHT LLS YAHN I VKEGQ V +GQ+IA MG+S Sbjct: 231 LAAGAGKVMYAGSGIRGYGNLVIVKHTSNLLSAYAHNKAILVKEGQNVNKGQKIAEMGDS 290 Query: 226 DTNKVKLYFEIRRNGKPVNVMALLPAR 252 D++ VKL+FEIR+ GKPV+ LP+R Sbjct: 291 DSDSVKLHFEIRQQGKPVDPSKFLPSR 317 >ref|YP_004752563.1| lipoprotein [Collimonas fungivorans Ter331] gb|AEK61740.1| lipoprotein precursor [Collimonas fungivorans Ter331] Length = 324 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 122/273 (44%), Positives = 155/273 (56%), Gaps = 50/273 (18%) Query: 29 ADSEGYYTVKRGDTLYSIGRDFDQSPANLRAWNRLRNPDDLEVGQRILVRPP-------- 80 A+ G YTVK+GDTLY I +F QS ++ AWN+L N +D++VGQ + V+PP Sbjct: 53 AEGRGSYTVKQGDTLYRIALEFGQSYRDIVAWNKLDNANDIKVGQVLRVQPPDSGSGPGG 112 Query: 81 --AGVVARTGAGQTPRA---------SASSGAETTPRKNAGKPAAKPAPKSQDDDDAPAP 129 G VA TG+G R+ AS G ++ PR + + + Q D P+ Sbjct: 113 AQIGTVA-TGSGVEVRSLGSAPSAAAVASGGNKSGPRGDKRPYSDSALAELQKPDAGPSS 171 Query: 130 A------------------------------DAKLDWMWPTQGKSAPSADSYKKGIDITG 159 + K+DWMWP +GK + D KKGIDI G Sbjct: 172 ETPKPAATPAVTAPAAAAASTASTAAPASGDEDKVDWMWPAEGKQVGAFDQGKKGIDIAG 231 Query: 160 TQGQTVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNATITVKEGQMVTRGQQI 219 GQ VVAAA GKV YAG GIRGYGN+VIIKHT LLS YAHN TI VKEGQ V++GQ+I Sbjct: 232 KAGQNVVAAAGGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNKTILVKEGQTVSKGQKI 291 Query: 220 ATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252 A MGNSD++ VKL+FEIR+ GKPV+ LP+R Sbjct: 292 AEMGNSDSDAVKLHFEIRQQGKPVDPSKFLPSR 324