BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4936.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777181.1| glycerol-3-phosphate ABC transporter peripla... 820 0.0 ref|YP_004751860.1| glycerol-3-phosphate ABC transporter peripla... 649 0.0 ref|YP_296260.1| extracellular solute-binding protein [Ralstonia... 602 e-170 gb|AEG69396.1| glycerol-3-phosphate-binding periplasmic lipoprot... 598 e-169 ref|YP_002981149.1| family 1 extracellular solute-binding protei... 595 e-168 >ref|YP_003777181.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65273.1| ABC-type glycerol-3-phosphate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 427/434 (98%), Positives = 431/434 (99%) Query: 1 MNMMKTLIATGVLATITSSAFAATEITWWHSMTGALGERVNALADDFNKTQGDYKIVPVY 60 MNMMKTLIATGVLATITSSAFAAT ITWWHSMTGALGERVNALADDFNKTQGDYKIVPVY Sbjct: 1 MNMMKTLIATGVLATITSSAFAATAITWWHSMTGALGERVNALADDFNKTQGDYKIVPVY 60 Query: 61 KGTYDESMSAAIAAYRAGNAPSILQVFEVGTATMIYAKGAVKPVYEVMQQAGEKFDQNAY 120 KGTYDESMSAAIAAYRAGNAP+ILQVFEVGTATMIYAKGAVKPVYEVM QAGEKFDQNAY Sbjct: 61 KGTYDESMSAAIAAYRAGNAPAILQVFEVGTATMIYAKGAVKPVYEVMHQAGEKFDQNAY 120 Query: 121 VPAVAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKAS 180 VPAVAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKAS Sbjct: 121 VPAVAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKAS 180 Query: 181 GASCAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAK 240 GA+CAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAK Sbjct: 181 GAACAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAK 240 Query: 241 QGYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQN 300 QGYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQN Sbjct: 241 QGYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQN 300 Query: 301 TVIGGASLWVMNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGF 360 TVIGGASLWVMNGKK +EYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGF Sbjct: 301 TVIGGASLWVMNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGF 360 Query: 361 YERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDSAVK 420 YERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAK+ALDSAVK Sbjct: 361 YERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKDALDSAVK 420 Query: 421 RGDELLARFEKANK 434 RGDELLARFEKANK Sbjct: 421 RGDELLARFEKANK 434 >ref|YP_004751860.1| glycerol-3-phosphate ABC transporter periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] gb|AEK61037.1| Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein [Collimonas fungivorans Ter331] Length = 435 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 329/433 (75%), Positives = 375/433 (86%), Gaps = 2/433 (0%) Query: 4 MKTLIATGVLATITSSAFAATEITWWHSMTGALGERVNALADDFNKTQGDYKIVPVYKGT 63 +K L LAT++ +A AATEI+WWHSM GALG+RVN LAD+FNK+Q +YK+ PVYKG Sbjct: 3 LKALAIACTLATMSIAAHAATEISWWHSMAGALGDRVNGLADEFNKSQSEYKVTPVYKGA 62 Query: 64 YDESMSAAIAAYRAGNAPSILQVFEVGTATMIYAKGAVKPVYEVMQQAGEKFDQNAYVPA 123 YDE+M+AA AAYRAGNAP ILQVFEVGTATM+Y+KGA+KPV EVM+ AGE FD +AYVPA Sbjct: 63 YDEAMAAATAAYRAGNAPDILQVFEVGTATMMYSKGAIKPVSEVMKLAGEPFDPSAYVPA 122 Query: 124 VAGYYSTPKG--MMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKASG 181 + GYY+ PKG ++S PFNSSTT+MFYNKDMF KAGLDP KPPVTWQE AAK+KASG Sbjct: 123 IGGYYAAPKGGGLLSLPFNSSTTVMFYNKDMFTKAGLDPNKPPVTWQELAVDAAKLKASG 182 Query: 182 ASCAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAKQ 241 A CAYTTTWQSWV LESFSTWHNVE A+KNNGF GLD RLK NSPLHV+HIENL+NWAKQ Sbjct: 183 AKCAYTTTWQSWVELESFSTWHNVEFASKNNGFDGLDTRLKFNSPLHVKHIENLANWAKQ 242 Query: 242 GYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQNT 301 GYFTYAGRKDEA +KF AGEC I+TGSSS+YADI KN+KFKFG+ATLPYYNDV GAPQNT Sbjct: 243 GYFTYAGRKDEATSKFYAGECGILTGSSSSYADIAKNSKFKFGIATLPYYNDVPGAPQNT 302 Query: 302 VIGGASLWVMNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFY 361 +IGGASLWVM GKK E+YKGVAKFF +LSKPEV AKWHQ+TGYLP T AAYE+T+ SGFY Sbjct: 303 MIGGASLWVMGGKKTEDYKGVAKFFKFLSKPEVQAKWHQETGYLPTTTAAYEITRKSGFY 362 Query: 362 ERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDSAVKR 421 ERNPGTDV VKQMI KTT+KSRG+RLGN Q+RT+ DEELENVWTGK + K+ALD+AV+R Sbjct: 363 ERNPGTDVPVKQMITKTTDKSRGIRLGNMPQIRTIIDEELENVWTGKITPKQALDTAVER 422 Query: 422 GDELLARFEKANK 434 G+ LL RFEK NK Sbjct: 423 GNLLLERFEKTNK 435 >ref|YP_296260.1| extracellular solute-binding protein [Ralstonia eutropha JMP134] gb|AAZ61416.1| glycerol 3-phosphate-binding protein [Ralstonia eutropha JMP134] Length = 438 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 302/434 (69%), Positives = 359/434 (82%), Gaps = 3/434 (0%) Query: 1 MNMMKTLIATGVLATITS--SAFAATEITWWHSMTGALGERVNALADDFNKTQGDYKIVP 58 M+ +++ VLA +T SA AA EI WWHSM GAL ++VNA+A+ FN +Q DYKIVP Sbjct: 1 MSFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVP 60 Query: 59 VYKGTYDESMSAAIAAYRAGNAPSILQVFEVGTATMIYAKGAVKPVYEVMQQAGEKFDQN 118 VYKG YDES++A IAA+R+GNAP+ILQVFEVGTATM+ AKGA+KPV VM++AGEKFD Sbjct: 61 VYKGQYDESLAAGIAAFRSGNAPAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPK 120 Query: 119 AYVPAVAGYYSTPKG-MMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKI 177 AY+PAVAGYY++ KG M+SFPFNSSTT+M+YNKD F KAGLDP KPP TWQE +AK+ Sbjct: 121 AYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAGLDPNKPPATWQEVATDSAKL 180 Query: 178 KASGASCAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSN 237 KA+G SC YTT WQSWVHLESFS WHNV AT+NNGFGG ARL NSPLHV+HI NL + Sbjct: 181 KAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLD 240 Query: 238 WAKQGYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGA 297 +++GYF Y GRKDE AKF AG+CA++TGSS+A A+IRKNAKF F VA LPY V GA Sbjct: 241 MSQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGA 300 Query: 298 PQNTVIGGASLWVMNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKS 357 PQNT+IGGASLWVM+G+K +EYKGVAKFFSYLS+P+V A WHQ TGYLPVT AAYELTK Sbjct: 301 PQNTIIGGASLWVMSGRKPDEYKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKK 360 Query: 358 SGFYERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDS 417 SG+Y++NPG DVAVKQMIVKTT+KSRG+RLGN+ Q+R+V DEELE VW+GKK KEALD+ Sbjct: 361 SGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWSGKKQPKEALDA 420 Query: 418 AVKRGDELLARFEK 431 AV RG+ELL RF+K Sbjct: 421 AVARGNELLERFQK 434 >gb|AEG69396.1| glycerol-3-phosphate-binding periplasmic lipoprotein [Ralstonia solanacearum Po82] Length = 470 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 305/437 (69%), Positives = 352/437 (80%), Gaps = 3/437 (0%) Query: 1 MNMMKTLIATGVLA--TITSSAFAATEITWWHSMTGALGERVNALADDFNKTQGDYKIVP 58 M + K A VLA T +A A TEI WWHSM GAL E+VN LA+ FN +Q DYK+VP Sbjct: 33 MTIQKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNEKVNELANKFNASQSDYKVVP 92 Query: 59 VYKGTYDESMSAAIAAYRAGNAPSILQVFEVGTATMIYAKGAVKPVYEVMQQAGEKFDQN 118 VYKG YDES++A IAA+RAGNAP+ILQVFEVGTATM+ A+GA+ PV +VM+ AGEKFD Sbjct: 93 VYKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPVAKVMKDAGEKFDPK 152 Query: 119 AYVPAVAGYYSTPKG-MMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKI 177 AYVPAVAGYY++ KG M+SFPFNSSTTI++YNKD F KAGLDP KPP TWQE AAK+ Sbjct: 153 AYVPAVAGYYTSNKGEMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAIDAAKL 212 Query: 178 KASGASCAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSN 237 KA+G +C YTT WQSWVHLESFS WHNV AT+NNGFGG ARL N P+ V+HIE+L + Sbjct: 213 KAAGFACGYTTDWQSWVHLESFSAWHNVVFATENNGFGGAKARLAFNGPVQVQHIEHLLD 272 Query: 238 WAKQGYFTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGA 297 K+GYFTYAGRKDE AKF AGECA+ TGSS+A A+IRKNAKF F A LPY V GA Sbjct: 273 MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFSFSPAPLPYEAGVPGA 332 Query: 298 PQNTVIGGASLWVMNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKS 357 PQNT+IGGASLWVM G K EEYKGVA+FFS+LS+PE+ A WHQ TGYLPVT AYELT+ Sbjct: 333 PQNTIIGGASLWVMGGHKPEEYKGVARFFSFLSRPEIQADWHQSTGYLPVTMEAYELTRK 392 Query: 358 SGFYERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDS 417 SGFY++NPG DVAVKQMIVKTT+KSRG+RLGN+ Q+R+V DEELE VW GKKS KEALDS Sbjct: 393 SGFYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWAGKKSPKEALDS 452 Query: 418 AVKRGDELLARFEKANK 434 AV RG++LLARFEK K Sbjct: 453 AVARGNDLLARFEKTVK 469 >ref|YP_002981149.1| family 1 extracellular solute-binding protein [Ralstonia pickettii 12D] ref|ZP_07677015.1| sn-glycerol-3-phosphate-binding periplasmic protein UgpB [Ralstonia sp. 5_7_47FAA] gb|ACS62477.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12D] gb|EFP64576.1| sn-glycerol-3-phosphate-binding periplasmic protein UgpB [Ralstonia sp. 5_7_47FAA] Length = 438 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 300/421 (71%), Positives = 342/421 (81%), Gaps = 1/421 (0%) Query: 15 TITSSAFAATEITWWHSMTGALGERVNALADDFNKTQGDYKIVPVYKGTYDESMSAAIAA 74 T A+A TEI WWHSM GAL ++VN +A FN +Q DYKIVPVYKG YDES++A IAA Sbjct: 17 TFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIAA 76 Query: 75 YRAGNAPSILQVFEVGTATMIYAKGAVKPVYEVMQQAGEKFDQNAYVPAVAGYYSTPKG- 133 +RAGNAP+ILQVFEVGTATM+ AKGA+ PV ++M+ AGEKFD AYVPAVAGYY++ KG Sbjct: 77 FRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKGE 136 Query: 134 MMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKASGASCAYTTTWQSW 193 M+SFPFNSSTTIM+YNKD F KAGLDP KPP TWQE AAK+KA+G C YTT WQSW Sbjct: 137 MLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQSW 196 Query: 194 VHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAKQGYFTYAGRKDEA 253 VHLESFS WHNV AT+NNGFGG ARL N P+ ++HIENL + K+GYFTYAGRKDE Sbjct: 197 VHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDEP 256 Query: 254 NAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQNTVIGGASLWVMNG 313 AKF AGECA+ TGSS+A A+IRKNAKF F A LPY V GAPQNT+IGGASLWVM G Sbjct: 257 KAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMGG 316 Query: 314 KKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYERNPGTDVAVKQ 373 K EEYKGVAKFFS+LS+PE+ A WHQ TGYLPVT AYELTK SGFYE+NPG DVAVKQ Sbjct: 317 HKAEEYKGVAKFFSFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVKQ 376 Query: 374 MIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDSAVKRGDELLARFEKAN 433 MIVKTT+KSRG+RLGN+ Q+R V DEELE+VW GKK+ KEALD+AV RG+ELL RFEK Sbjct: 377 MIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKAPKEALDTAVSRGNELLVRFEKTV 436 Query: 434 K 434 K Sbjct: 437 K 437