BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4935.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter perm... 435 e-120 ref|YP_004751859.1| SN-glycerol-3-phosphate transport system per... 375 e-102 ref|YP_004620257.1| sugar ABC transporter permease [Ramlibacter ... 325 3e-87 ref|YP_001630928.1| sn-glycerol-3-phosphate transport system, pe... 322 3e-86 ref|NP_880050.1| sn-glycerol-3-phosphate transport system, perme... 318 4e-85 >ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65272.1| ABC-type sn-glycerol-3-phosphate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 249/255 (97%), Positives = 254/255 (99%) Query: 1 MLLQDAFGGYSEFVWFDNFKTLFADPTYLESFRTTALFSALVAFFGLALSLLLAVFADRV 60 MLLQDAFGGYSEFVWFDNFKTLF DPTYLESFRTTA+FSALVAFFGLALSLLLAVFADRV Sbjct: 40 MLLQDAFGGYSEFVWFDNFKTLFGDPTYLESFRTTAIFSALVAFFGLALSLLLAVFADRV 99 Query: 61 RRGASVYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMIL 120 RRGAS+YKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVL+WLGLPWDYMINGTHAMIL Sbjct: 100 RRGASIYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLSWLGLPWDYMINGTHAMIL 159 Query: 121 IVVAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV 180 IV+AAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV Sbjct: 160 IVIAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV 219 Query: 181 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFTDGFKGGDLGGSAAQSVVLMALVILL 240 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVF+DGFKGGDLGGSAAQSVVLMALVILL Sbjct: 220 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFSDGFKGGDLGGSAAQSVVLMALVILL 279 Query: 241 TVVQFKYVEKKVQYA 255 TVVQFKYVEKKVQYA Sbjct: 280 TVVQFKYVEKKVQYA 294 >ref|YP_004751859.1| SN-glycerol-3-phosphate transport system permease [Collimonas fungivorans Ter331] gb|AEK61036.1| SN-glycerol-3-phosphate transport system permease protein [Collimonas fungivorans Ter331] Length = 315 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 204/255 (80%), Positives = 236/255 (92%) Query: 1 MLLQDAFGGYSEFVWFDNFKTLFADPTYLESFRTTALFSALVAFFGLALSLLLAVFADRV 60 MLLQDAFGGYSEFVWFDNF+TLFAD YL SF+TTA+FS LVA GL+LSL+LA FADRV Sbjct: 61 MLLQDAFGGYSEFVWFDNFRTLFADSNYLASFKTTAVFSILVAVLGLSLSLMLAAFADRV 120 Query: 61 RRGASVYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMIL 120 +G+++YKTFLIWPYAVSPVVVGVLWMF+LSP+LGI+S+ L ++G+ W++++NG HAMIL Sbjct: 121 VKGSAIYKTFLIWPYAVSPVVVGVLWMFMLSPTLGIVSNWLHYIGIDWNHVLNGRHAMIL 180 Query: 121 IVVAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV 180 IV+AA+WKQ+SYNFLFFLAGLQ+IPKSLIEAAAIDGAGPVKRF TI+FPL+SPTTFFL V Sbjct: 181 IVIAAVWKQVSYNFLFFLAGLQAIPKSLIEAAAIDGAGPVKRFATIIFPLLSPTTFFLLV 240 Query: 181 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFTDGFKGGDLGGSAAQSVVLMALVILL 240 VN+VYAFFDTF I++ATT GGPGKDTEILVYKVF DGFKGGDLGG+AAQSVVLM +VI+L Sbjct: 241 VNIVYAFFDTFAIIEATTQGGPGKDTEILVYKVFIDGFKGGDLGGAAAQSVVLMTIVIVL 300 Query: 241 TVVQFKYVEKKVQYA 255 TV QFKYVEKKVQYA Sbjct: 301 TVAQFKYVEKKVQYA 315 >ref|YP_004620257.1| sugar ABC transporter permease [Ramlibacter tataouinensis TTB310] gb|AEG94238.1| candidate ABC type sugar transport system, permease component [Ramlibacter tataouinensis TTB310] Length = 294 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 175/254 (68%), Positives = 216/254 (85%) Query: 1 MLLQDAFGGYSEFVWFDNFKTLFADPTYLESFRTTALFSALVAFFGLALSLLLAVFADRV 60 +L QDAFG SEFV +NF+ LF DP+YLESF+TTALFSALVA GL+++LLLAV A+RV Sbjct: 41 LLQQDAFGMSSEFVGLENFRRLFNDPSYLESFKTTALFSALVAVLGLSIALLLAVMANRV 100 Query: 61 RRGASVYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMIL 120 RG+ +Y+ LIWPYAV+PVV GVLW+ + + G++++ L ++G+PWD+++N HAM L Sbjct: 101 IRGSGLYRMLLIWPYAVAPVVAGVLWLMMFASPYGVVAYFLRYIGIPWDHLLNANHAMAL 160 Query: 121 IVVAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV 180 IV+AA+WKQISYNFLFFLAGLQSIP+SLIEAA IDGA P +RF+ IVFPL+SPTTFFL V Sbjct: 161 IVMAAVWKQISYNFLFFLAGLQSIPQSLIEAATIDGATPWRRFWGIVFPLLSPTTFFLLV 220 Query: 181 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFTDGFKGGDLGGSAAQSVVLMALVILL 240 +NV+YAFFDTF IVDATTHGGPGK+T ILVYKV+ DGFK D+ GSAAQSV+LM +VI L Sbjct: 221 INVIYAFFDTFAIVDATTHGGPGKETAILVYKVYYDGFKALDINGSAAQSVILMGIVIAL 280 Query: 241 TVVQFKYVEKKVQY 254 TVVQF++VEKKVQY Sbjct: 281 TVVQFRFVEKKVQY 294 >ref|YP_001630928.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella petrii DSM 12804] emb|CAP42660.1| sn-Glycerol-3-phosphate transport system, permease protein [Bordetella petrii] Length = 293 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 180/254 (70%), Positives = 212/254 (83%) Query: 1 MLLQDAFGGYSEFVWFDNFKTLFADPTYLESFRTTALFSALVAFFGLALSLLLAVFADRV 60 M LQDAFG SEFV NF LF P YL+SFR TA+FSALVAF GLA+SLLLAV ADRV Sbjct: 40 MQLQDAFGLSSEFVGLANFVDLFRQPDYLDSFRVTAVFSALVAFVGLAVSLLLAVMADRV 99 Query: 61 RRGASVYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMIL 120 RGA +YKT LIWPYAV+P VVGVLW+FL SPS+GIL+ L LG+ W+ +NG A+ L Sbjct: 100 MRGAGLYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALYDLGVSWNPRLNGNQALTL 159 Query: 121 IVVAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFV 180 +++AA+WKQISYNFLFFLAGLQSIP+SLIEAAAIDGA PV+RF+TIVFPL+SPTTFFL V Sbjct: 160 VLIAAVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPVRRFWTIVFPLLSPTTFFLLV 219 Query: 181 VNVVYAFFDTFVIVDATTHGGPGKDTEILVYKVFTDGFKGGDLGGSAAQSVVLMALVILL 240 VN++YAFFDTF ++D TT GGPG T ILVYKV++D F G DLG SAAQSVVLMA+V+ L Sbjct: 220 VNIIYAFFDTFAVIDTTTQGGPGTATSILVYKVYSDAFHGLDLGSSAAQSVVLMAIVVTL 279 Query: 241 TVVQFKYVEKKVQY 254 TVVQF+Y+++KVQY Sbjct: 280 TVVQFRYIDRKVQY 293 >ref|NP_880050.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella pertussis Tohama I] ref|NP_885136.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella parapertussis 12822] ref|NP_889449.1| sn-glycerol-3-phosphate transport system, permease [Bordetella bronchiseptica RB50] emb|CAE41578.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella pertussis Tohama I] emb|CAE38237.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella parapertussis] emb|CAE33405.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella bronchiseptica RB50] gb|AEE66669.1| sn-glycerol-3-phosphate transport system, permease protein [Bordetella pertussis CS] Length = 293 Score = 318 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 175/252 (69%), Positives = 214/252 (84%) Query: 3 LQDAFGGYSEFVWFDNFKTLFADPTYLESFRTTALFSALVAFFGLALSLLLAVFADRVRR 62 L+DAFG SEFV NF LF+ +YL+SFR TA+FSALVAF GLA+SLLLAV ADRV R Sbjct: 42 LEDAFGLSSEFVGLANFADLFSQQSYLDSFRVTAVFSALVAFVGLAVSLLLAVMADRVLR 101 Query: 63 GASVYKTFLIWPYAVSPVVVGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIV 122 GA +YKT LIWPYAV+P VVGVLW+FL SPS+GIL+ L +G+ W+ ++G A+IL++ Sbjct: 102 GAGLYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALNGMGVNWNPRLDGDQALILVL 161 Query: 123 VAAIWKQISYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFVVN 182 +AA+WKQISYNFLFFLAGLQSIP+SLIEAAAIDGA P +RF+TIVFPL+SPTTFFL VVN Sbjct: 162 IAAVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPARRFWTIVFPLLSPTTFFLLVVN 221 Query: 183 VVYAFFDTFVIVDATTHGGPGKDTEILVYKVFTDGFKGGDLGGSAAQSVVLMALVILLTV 242 ++YAFFDTF ++D TT GGPG T ILVYKV++DGF+G DLG SAAQSVVLMA+V+ LTV Sbjct: 222 IIYAFFDTFAVIDTTTQGGPGTATSILVYKVYSDGFRGLDLGSSAAQSVVLMAIVVALTV 281 Query: 243 VQFKYVEKKVQY 254 +QF+Y+++KVQY Sbjct: 282 LQFRYIDRKVQY 293